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(-) Description

Title :  DECAMERIC STRUCTURE OF HUMAN SERUM AMYLOID P-COMPONENT BOUND TO BIS-1, 2-{[(Z)-2-CARBOXY-2-METHYL-1,3-DIOXANE]-5-YLOXYCARBAMOYL}-ETHANE
 
Authors :  J. G. Ho, P. I. Kitov, E. Paszkiewicz, J. Sadowska, D. R. Bundle, K. K. Ng
Date :  27 Jun 05  (Deposition) - 26 Jul 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T
Biol. Unit 1:  A,B,C,D,E,F,G,H,I,J  (1x)
Biol. Unit 2:  K,L,M,N,O,P,Q,R,S,T  (1x)
Biol. Unit 3:  K,L,M,N,O  (1x)
Biol. Unit 4:  A,B,C,D,E  (1x)
Biol. Unit 5:  F,G,H,I,J  (1x)
Biol. Unit 6:  P,Q,R,S,T  (1x)
Keywords :  Multivalent Ligand Complex, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. G. Ho, P. I. Kitov, E. Paszkiewicz, J. Sadowska, D. R. Bundle, K. K. Ng
Ligand-Assisted Aggregation Of Proteins: Dimerization Of Serum Amyloid P Component By Bivalent Ligands.
J. Biol. Chem. V. 280 31999 2005
PubMed-ID: 16036920  |  Reference-DOI: 10.1074/JBC.M504403200

(-) Compounds

Molecule 1 - SERUM AMYLOID P-COMPONENT
    ChainsA, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymSAP, 9.5S ALPHA-1-GLYCOPROTEIN

 Structural Features

(-) Chains, Units

  1234567891011121314151617181920
Asymmetric Unit ABCDEFGHIJKLMNOPQRST
Biological Unit 1 (1x)ABCDEFGHIJ          
Biological Unit 2 (1x)          KLMNOPQRST
Biological Unit 3 (1x)          KLMNO     
Biological Unit 4 (1x)ABCDE               
Biological Unit 5 (1x)     FGHIJ          
Biological Unit 6 (1x)               PQRST

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 50)

Asymmetric Unit (2, 50)
No.NameCountTypeFull Name
1CA40Ligand/IonCALCIUM ION
2CPJ10Ligand/IonBIS-1,2-{[(Z)-2-CARBOXY-2-METHYL-1,3-DIOXANE]-5-YLOXYCARBAMOYL}-ETHANE
Biological Unit 1 (1, 5)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CPJ5Ligand/IonBIS-1,2-{[(Z)-2-CARBOXY-2-METHYL-1,3-DIOXANE]-5-YLOXYCARBAMOYL}-ETHANE
Biological Unit 2 (1, 5)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CPJ5Ligand/IonBIS-1,2-{[(Z)-2-CARBOXY-2-METHYL-1,3-DIOXANE]-5-YLOXYCARBAMOYL}-ETHANE
Biological Unit 3 (1, 3)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CPJ3Ligand/IonBIS-1,2-{[(Z)-2-CARBOXY-2-METHYL-1,3-DIOXANE]-5-YLOXYCARBAMOYL}-ETHANE
Biological Unit 4 (1, 5)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CPJ5Ligand/IonBIS-1,2-{[(Z)-2-CARBOXY-2-METHYL-1,3-DIOXANE]-5-YLOXYCARBAMOYL}-ETHANE
Biological Unit 5 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CPJ-1Ligand/IonBIS-1,2-{[(Z)-2-CARBOXY-2-METHYL-1,3-DIOXANE]-5-YLOXYCARBAMOYL}-ETHANE
Biological Unit 6 (1, 2)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CPJ2Ligand/IonBIS-1,2-{[(Z)-2-CARBOXY-2-METHYL-1,3-DIOXANE]-5-YLOXYCARBAMOYL}-ETHANE

(-) Sites  (50, 50)

Asymmetric Unit (50, 50)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:136 , ASP A:138 , GLN A:148 , CPJ A:341 , HOH A:638 , HOH A:639BINDING SITE FOR RESIDUE CA A 301
02AC2SOFTWAREASP A:58 , ASN A:59 , GLU A:136 , GLN A:137 , ASP A:138 , CPJ A:341BINDING SITE FOR RESIDUE CA A 302
03AC3SOFTWAREGLU B:136 , ASP B:138 , GLN B:148 , CPJ B:342 , HOH B:648 , HOH B:649BINDING SITE FOR RESIDUE CA B 303
04AC4SOFTWAREASP B:58 , ASN B:59 , GLU B:136 , GLN B:137 , ASP B:138 , CPJ B:342BINDING SITE FOR RESIDUE CA B 304
05AC5SOFTWAREASP C:58 , ASN C:59 , GLU C:136 , GLN C:137 , ASP C:138 , CPJ C:343BINDING SITE FOR RESIDUE CA C 305
06AC6SOFTWAREGLU C:136 , ASP C:138 , GLN C:148 , CPJ C:343 , HOH C:650 , HOH C:651BINDING SITE FOR RESIDUE CA C 306
07AC7SOFTWAREASP D:58 , ASN D:59 , GLU D:136 , GLN D:137 , ASP D:138 , CPJ D:344BINDING SITE FOR RESIDUE CA D 307
08AC8SOFTWAREGLU D:136 , ASP D:138 , GLN D:148 , CPJ D:344 , HOH D:652 , HOH D:653BINDING SITE FOR RESIDUE CA D 308
09AC9SOFTWAREASP E:58 , ASN E:59 , GLU E:136 , GLN E:137 , ASP E:138 , CPJ E:345BINDING SITE FOR RESIDUE CA E 309
10BC1SOFTWAREGLU E:136 , ASP E:138 , GLN E:148 , CPJ E:345 , HOH E:654 , HOH E:655BINDING SITE FOR RESIDUE CA E 310
11BC2SOFTWARECPJ E:345 , GLU F:136 , ASP F:138 , GLN F:148 , HOH F:645 , HOH F:656BINDING SITE FOR RESIDUE CA F 311
12BC3SOFTWARECPJ E:345 , ASP F:58 , ASN F:59 , GLU F:136 , GLN F:137 , ASP F:138BINDING SITE FOR RESIDUE CA F 312
13BC4SOFTWARECPJ D:344 , ASP G:58 , ASN G:59 , GLU G:136 , GLN G:137 , ASP G:138BINDING SITE FOR RESIDUE CA G 313
14BC5SOFTWARECPJ D:344 , GLU G:136 , ASP G:138 , GLN G:148 , HOH G:657 , HOH G:658BINDING SITE FOR RESIDUE CA G 314
15BC6SOFTWARECPJ C:343 , ASP H:58 , ASN H:59 , GLU H:136 , GLN H:137 , ASP H:138BINDING SITE FOR RESIDUE CA H 315
16BC7SOFTWARECPJ C:343 , GLU H:136 , ASP H:138 , GLN H:148 , HOH H:659 , HOH H:660BINDING SITE FOR RESIDUE CA H 316
17BC8SOFTWARECPJ B:342 , ASP I:58 , ASN I:59 , GLU I:136 , GLN I:137 , ASP I:138BINDING SITE FOR RESIDUE CA I 317
18BC9SOFTWARECPJ B:342 , GLU I:136 , ASP I:138 , GLN I:148 , HOH I:661 , HOH I:662BINDING SITE FOR RESIDUE CA I 318
19CC1SOFTWARECPJ A:341 , GLU J:136 , ASP J:138 , GLN J:148 , HOH J:664 , HOH J:665BINDING SITE FOR RESIDUE CA J 319
20CC2SOFTWARECPJ A:341 , ASP J:58 , ASN J:59 , GLU J:136 , GLN J:137 , ASP J:138BINDING SITE FOR RESIDUE CA J 320
21CC3SOFTWAREASP K:58 , ASN K:59 , GLU K:136 , GLN K:137 , ASP K:138 , CA K:322 , CPJ P:346BINDING SITE FOR RESIDUE CA K 321
22CC4SOFTWAREGLU K:136 , ASP K:138 , GLN K:148 , CA K:321 , HOH K:667 , CPJ P:346 , HOH P:666BINDING SITE FOR RESIDUE CA K 322
23CC5SOFTWAREGLU L:136 , ASP L:138 , GLN L:148 , CPJ L:347 , HOH L:668 , HOH L:669BINDING SITE FOR RESIDUE CA L 323
24CC6SOFTWAREASP L:58 , ASN L:59 , GLU L:136 , GLN L:137 , ASP L:138 , CPJ L:347BINDING SITE FOR RESIDUE CA L 324
25CC7SOFTWAREASP M:58 , ASN M:59 , GLU M:136 , GLN M:137 , ASP M:138 , CPJ M:348BINDING SITE FOR RESIDUE CA M 325
26CC8SOFTWAREGLU M:136 , ASP M:138 , GLN M:148 , CPJ M:348 , HOH M:670 , HOH M:671BINDING SITE FOR RESIDUE CA M 326
27CC9SOFTWAREASP N:58 , ASN N:59 , GLU N:136 , GLN N:137 , ASP N:138 , CPJ N:349BINDING SITE FOR RESIDUE CA N 327
28DC1SOFTWAREGLU N:136 , ASP N:138 , GLN N:148 , CPJ N:349 , HOH N:672 , HOH N:673BINDING SITE FOR RESIDUE CA N 328
29DC2SOFTWAREASP O:58 , ASN O:59 , GLU O:136 , GLN O:137 , ASP O:138 , CPJ Q:350BINDING SITE FOR RESIDUE CA O 329
30DC3SOFTWAREGLU O:136 , ASP O:138 , GLN O:148 , HOH O:674 , HOH O:675 , CPJ Q:350BINDING SITE FOR RESIDUE CA O 330
31DC4SOFTWAREASP P:58 , ASN P:59 , GLU P:136 , GLN P:137 , ASP P:138 , CPJ P:346BINDING SITE FOR RESIDUE CA P 331
32DC5SOFTWAREGLU P:136 , ASP P:138 , GLN P:148 , CPJ P:346 , HOH P:676 , HOH P:677BINDING SITE FOR RESIDUE CA P 332
33DC6SOFTWAREASP Q:58 , ASN Q:59 , GLU Q:136 , GLN Q:137 , ASP Q:138 , CPJ Q:350BINDING SITE FOR RESIDUE CA Q 333
34DC7SOFTWAREGLU Q:136 , ASP Q:138 , GLN Q:148 , CPJ Q:350 , HOH Q:678 , HOH Q:679BINDING SITE FOR RESIDUE CA Q 334
35DC8SOFTWARECPJ N:349 , ASP R:58 , ASN R:59 , GLU R:136 , GLN R:137 , ASP R:138BINDING SITE FOR RESIDUE CA R 335
36DC9SOFTWARECPJ N:349 , GLU R:136 , ASP R:138 , GLN R:148 , HOH R:680BINDING SITE FOR RESIDUE CA R 336
37EC1SOFTWARECPJ M:348 , ASP S:58 , ASN S:59 , GLU S:136 , GLN S:137 , ASP S:138BINDING SITE FOR RESIDUE CA S 337
38EC2SOFTWARECPJ M:348 , GLU S:136 , ASP S:138 , GLN S:148 , HOH S:681 , HOH S:682BINDING SITE FOR RESIDUE CA S 338
39EC3SOFTWARECPJ L:347 , ASP T:58 , ASN T:59 , GLU T:136 , GLN T:137 , ASP T:138BINDING SITE FOR RESIDUE CA T 339
40EC4SOFTWARECPJ L:347 , GLU T:136 , ASP T:138 , GLN T:148 , HOH T:683 , HOH T:684BINDING SITE FOR RESIDUE CA T 340
41EC5SOFTWAREASP A:58 , ASN A:59 , LEU A:62 , TYR A:74 , GLU A:136 , ASP A:138 , GLN A:148 , CA A:301 , CA A:302 , HOH A:2834 , ASP J:58 , ASN J:59 , LEU J:62 , TYR J:74 , GLU J:136 , ASP J:138 , GLN J:148 , CA J:319 , CA J:320 , HOH J:665BINDING SITE FOR RESIDUE CPJ A 341
42EC6SOFTWAREASP B:58 , ASN B:59 , LEU B:62 , TYR B:74 , GLU B:136 , ASP B:138 , GLN B:148 , CA B:303 , CA B:304 , HOH B:649 , HOH B:786 , ASP I:58 , ASN I:59 , LEU I:62 , TYR I:74 , GLU I:136 , ASP I:138 , GLN I:148 , CA I:317 , CA I:318 , HOH I:662BINDING SITE FOR RESIDUE CPJ B 342
43EC7SOFTWAREASP C:58 , ASN C:59 , LEU C:62 , TYR C:74 , GLU C:136 , ASP C:138 , GLN C:148 , CA C:305 , CA C:306 , HOH C:726 , HOH C:785 , HOH C:1600 , HOH C:2842 , ASP H:58 , ASN H:59 , LEU H:62 , TYR H:74 , GLU H:136 , ASP H:138 , GLN H:148 , CA H:315 , CA H:316BINDING SITE FOR RESIDUE CPJ C 343
44EC8SOFTWAREASP D:58 , ASN D:59 , LEU D:62 , TYR D:74 , GLU D:136 , ASP D:138 , GLN D:148 , CA D:307 , CA D:308 , HOH D:653 , HOH D:1137 , HOH D:2005 , HOH D:3388 , ASP G:58 , ASN G:59 , LEU G:62 , TYR G:74 , GLU G:136 , ASP G:138 , GLN G:148 , CA G:313 , CA G:314 , HOH G:3324BINDING SITE FOR RESIDUE CPJ D 344
45EC9SOFTWAREASP E:58 , ASN E:59 , LEU E:62 , TYR E:74 , GLU E:136 , ASP E:138 , GLN E:148 , CA E:309 , CA E:310 , HOH E:1738 , ASP F:58 , ASN F:59 , LEU F:62 , TYR F:74 , GLU F:136 , ASP F:138 , GLN F:148 , CA F:311 , CA F:312BINDING SITE FOR RESIDUE CPJ E 345
46FC1SOFTWAREASP K:58 , ASN K:59 , LEU K:62 , TYR K:74 , GLU K:136 , ASP K:138 , GLN K:148 , CA K:321 , CA K:322 , ASP P:58 , ASN P:59 , LEU P:62 , TYR P:74 , GLU P:136 , ASP P:138 , GLN P:148 , CA P:331 , CA P:332 , HOH P:666 , HOH P:2706BINDING SITE FOR RESIDUE CPJ P 346
47FC2SOFTWAREASP L:58 , ASN L:59 , LEU L:62 , TYR L:74 , GLU L:136 , ASP L:138 , GLN L:148 , CA L:323 , CA L:324 , HOH L:1274 , HOH L:2355 , ASP T:58 , ASN T:59 , LEU T:62 , TYR T:74 , GLU T:136 , ASP T:138 , GLN T:148 , CA T:339 , CA T:340 , HOH T:684BINDING SITE FOR RESIDUE CPJ L 347
48FC3SOFTWAREASP M:58 , ASN M:59 , LEU M:62 , TYR M:64 , TYR M:74 , GLU M:136 , ASP M:138 , GLN M:148 , CA M:325 , CA M:326 , HOH M:1859 , HOH M:3370 , ASP S:58 , ASN S:59 , LEU S:62 , TYR S:74 , GLU S:136 , ASP S:138 , GLN S:148 , CA S:337 , CA S:338 , HOH S:682BINDING SITE FOR RESIDUE CPJ M 348
49FC4SOFTWAREASP N:58 , ASN N:59 , LEU N:62 , TYR N:74 , GLU N:136 , ASP N:138 , GLN N:148 , CA N:327 , CA N:328 , HOH N:673 , ASP R:58 , ASN R:59 , LEU R:62 , TYR R:74 , GLU R:136 , ASP R:138 , GLN R:148 , CA R:335 , CA R:336BINDING SITE FOR RESIDUE CPJ N 349
50FC5SOFTWAREASP O:58 , ASN O:59 , LEU O:62 , TYR O:74 , GLU O:136 , ASP O:138 , GLN O:148 , CA O:329 , CA O:330 , ASP Q:58 , ASN Q:59 , LEU Q:62 , TYR Q:74 , GLU Q:136 , ASP Q:138 , GLN Q:148 , CA Q:333 , CA Q:334 , HOH Q:1694BINDING SITE FOR RESIDUE CPJ Q 350

(-) SS Bonds  (20, 20)

Asymmetric Unit
No.Residues
1A:36 -A:95
2B:36 -B:95
3C:36 -C:95
4D:36 -D:95
5E:36 -E:95
6F:36 -F:95
7G:36 -G:95
8H:36 -H:95
9I:36 -I:95
10J:36 -J:95
11K:36 -K:95
12L:36 -L:95
13M:36 -M:95
14N:36 -N:95
15O:36 -O:95
16P:36 -P:95
17Q:36 -Q:95
18R:36 -R:95
19S:36 -S:95
20T:36 -T:95

(-) Cis Peptide Bonds  (21, 21)

Asymmetric Unit
No.Residues
1Phe A:88 -Pro A:89
2Phe B:88 -Pro B:89
3Phe C:88 -Pro C:89
4His D:1 -Thr D:2
5Phe D:88 -Pro D:89
6Phe E:88 -Pro E:89
7Phe F:88 -Pro F:89
8Phe G:88 -Pro G:89
9Phe H:88 -Pro H:89
10Phe I:88 -Pro I:89
11Phe J:88 -Pro J:89
12Phe K:88 -Pro K:89
13Phe L:88 -Pro L:89
14Phe M:88 -Pro M:89
15Phe N:88 -Pro N:89
16Phe O:88 -Pro O:89
17Phe P:88 -Pro P:89
18Phe Q:88 -Pro Q:89
19Phe R:88 -Pro R:89
20Phe S:88 -Pro S:89
21Phe T:88 -Pro T:89

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (3, 60)

Asymmetric Unit (3, 60)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_035814G141SSAMP_HUMANUnclassified  ---A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R/S/TG122S
2UniProtVAR_006054E155GSAMP_HUMANPolymorphism  ---A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R/S/TE136G
3UniProtVAR_006055S158GSAMP_HUMANPolymorphism  ---A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R/S/TS139G

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (3, 30)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_035814G141SSAMP_HUMANUnclassified  ---A/B/C/D/E/F/G/H/I/JG122S
2UniProtVAR_006054E155GSAMP_HUMANPolymorphism  ---A/B/C/D/E/F/G/H/I/JE136G
3UniProtVAR_006055S158GSAMP_HUMANPolymorphism  ---A/B/C/D/E/F/G/H/I/JS139G

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (3, 30)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_035814G141SSAMP_HUMANUnclassified  ---K/L/M/N/O/P/Q/R/S/TG122S
2UniProtVAR_006054E155GSAMP_HUMANPolymorphism  ---K/L/M/N/O/P/Q/R/S/TE136G
3UniProtVAR_006055S158GSAMP_HUMANPolymorphism  ---K/L/M/N/O/P/Q/R/S/TS139G

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 3 (3, 15)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_035814G141SSAMP_HUMANUnclassified  ---K/L/M/N/OG122S
2UniProtVAR_006054E155GSAMP_HUMANPolymorphism  ---K/L/M/N/OE136G
3UniProtVAR_006055S158GSAMP_HUMANPolymorphism  ---K/L/M/N/OS139G

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 4 (3, 15)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_035814G141SSAMP_HUMANUnclassified  ---A/B/C/D/EG122S
2UniProtVAR_006054E155GSAMP_HUMANPolymorphism  ---A/B/C/D/EE136G
3UniProtVAR_006055S158GSAMP_HUMANPolymorphism  ---A/B/C/D/ES139G

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 5 (3, 15)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_035814G141SSAMP_HUMANUnclassified  ---F/G/H/I/JG122S
2UniProtVAR_006054E155GSAMP_HUMANPolymorphism  ---F/G/H/I/JE136G
3UniProtVAR_006055S158GSAMP_HUMANPolymorphism  ---F/G/H/I/JS139G

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 6 (3, 15)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_035814G141SSAMP_HUMANUnclassified  ---P/Q/R/S/TG122S
2UniProtVAR_006054E155GSAMP_HUMANPolymorphism  ---P/Q/R/S/TE136G
3UniProtVAR_006055S158GSAMP_HUMANPolymorphism  ---P/Q/R/S/TS139G

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (2, 40)

Asymmetric Unit (2, 40)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PTX_2PS51828 Pentraxin (PTX) domain profile.SAMP_HUMAN24-223
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
  20A:5-204
B:5-204
C:5-204
D:5-204
E:5-204
F:5-204
G:5-204
H:5-204
I:5-204
J:5-204
K:5-204
L:5-204
M:5-204
N:5-204
O:5-204
P:5-204
Q:5-204
R:5-204
S:5-204
T:5-204
2PTX_1PS00289 Pentraxin domain signature.SAMP_HUMAN112-119
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
  20A:93-100
B:93-100
C:93-100
D:93-100
E:93-100
F:93-100
G:93-100
H:93-100
I:93-100
J:93-100
K:93-100
L:93-100
M:93-100
N:93-100
O:93-100
P:93-100
Q:93-100
R:93-100
S:93-100
T:93-100
Biological Unit 1 (2, 20)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PTX_2PS51828 Pentraxin (PTX) domain profile.SAMP_HUMAN24-223
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
  10A:5-204
B:5-204
C:5-204
D:5-204
E:5-204
F:5-204
G:5-204
H:5-204
I:5-204
J:5-204
-
-
-
-
-
-
-
-
-
-
2PTX_1PS00289 Pentraxin domain signature.SAMP_HUMAN112-119
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
  10A:93-100
B:93-100
C:93-100
D:93-100
E:93-100
F:93-100
G:93-100
H:93-100
I:93-100
J:93-100
-
-
-
-
-
-
-
-
-
-
Biological Unit 2 (2, 20)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PTX_2PS51828 Pentraxin (PTX) domain profile.SAMP_HUMAN24-223
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
  10-
-
-
-
-
-
-
-
-
-
K:5-204
L:5-204
M:5-204
N:5-204
O:5-204
P:5-204
Q:5-204
R:5-204
S:5-204
T:5-204
2PTX_1PS00289 Pentraxin domain signature.SAMP_HUMAN112-119
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
  10-
-
-
-
-
-
-
-
-
-
K:93-100
L:93-100
M:93-100
N:93-100
O:93-100
P:93-100
Q:93-100
R:93-100
S:93-100
T:93-100
Biological Unit 3 (2, 10)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PTX_2PS51828 Pentraxin (PTX) domain profile.SAMP_HUMAN24-223
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
  5-
-
-
-
-
-
-
-
-
-
K:5-204
L:5-204
M:5-204
N:5-204
O:5-204
-
-
-
-
-
2PTX_1PS00289 Pentraxin domain signature.SAMP_HUMAN112-119
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
  5-
-
-
-
-
-
-
-
-
-
K:93-100
L:93-100
M:93-100
N:93-100
O:93-100
-
-
-
-
-
Biological Unit 4 (2, 10)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PTX_2PS51828 Pentraxin (PTX) domain profile.SAMP_HUMAN24-223
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
  5A:5-204
B:5-204
C:5-204
D:5-204
E:5-204
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
2PTX_1PS00289 Pentraxin domain signature.SAMP_HUMAN112-119
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
  5A:93-100
B:93-100
C:93-100
D:93-100
E:93-100
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
Biological Unit 5 (2, 10)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PTX_2PS51828 Pentraxin (PTX) domain profile.SAMP_HUMAN24-223
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
  5-
-
-
-
-
F:5-204
G:5-204
H:5-204
I:5-204
J:5-204
-
-
-
-
-
-
-
-
-
-
2PTX_1PS00289 Pentraxin domain signature.SAMP_HUMAN112-119
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
  5-
-
-
-
-
F:93-100
G:93-100
H:93-100
I:93-100
J:93-100
-
-
-
-
-
-
-
-
-
-
Biological Unit 6 (2, 10)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PTX_2PS51828 Pentraxin (PTX) domain profile.SAMP_HUMAN24-223
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
  5-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
P:5-204
Q:5-204
R:5-204
S:5-204
T:5-204
2PTX_1PS00289 Pentraxin domain signature.SAMP_HUMAN112-119
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
  5-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
P:93-100
Q:93-100
R:93-100
S:93-100
T:93-100

(-) Exons   (2, 40)

Asymmetric Unit (2, 40)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000002550401ENSE00000904938chr1:159557615-159557775161SAMP_HUMAN1-222220A:1-3
B:1-3
C:1-3
D:1-3
E:1-3
F:1-3
G:1-3
H:1-3
I:1-3
J:1-3
K:1-3
L:1-3
M:1-3
N:1-3
O:1-3
P:1-3
Q:1-3
R:1-3
S:1-3
T:1-3
3
3
3
3
3
3
3
3
3
3
3
3
3
3
3
3
3
3
3
3
1.2ENST000002550402ENSE00000904939chr1:159557891-159558655765SAMP_HUMAN22-22320220A:3-204
B:3-204
C:3-204
D:3-204
E:3-204
F:3-204
G:3-204
H:3-204
I:3-204
J:3-204
K:3-204
L:3-204
M:3-204
N:3-204
O:3-204
P:3-204
Q:3-204
R:3-204
S:3-204
T:3-204
202
202
202
202
202
202
202
202
202
202
202
202
202
202
202
202
202
202
202
202

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:204
 aligned with SAMP_HUMAN | P02743 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:204
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219    
           SAMP_HUMAN    20 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 223
               SCOP domains d2a3wa_ A: Serum amyloid P component (SAP)                                                                                                                                                                   SCOP domains
               CATH domains 2a3wA00 A:1-204  [code=2.60.120.200, no name defined]                                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee.......eeeee........eeeeeeeee......eeeeeeee..eeeeeeeeeee..eeeeee..eeeeee........eeeeeeee....eeeeee..ee...ee...........eeee...........hhhhh..eeeeeeeee....hhhhhhhhhh........ee.hhheeeee...eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------S-------------G--G----------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----PTX_2  PDB: A:5-204 UniProt: 24-223                                                                                                                                                                      PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------PTX_1   -------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) 1.1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --Exon 1.2  PDB: A:3-204 UniProt: 22-223                                                                                                                                                                     Transcript 1 (2)
                 2a3w A   1 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200    

Chain B from PDB  Type:PROTEIN  Length:204
 aligned with SAMP_HUMAN | P02743 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:204
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219    
           SAMP_HUMAN    20 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 223
               SCOP domains d2a3wb_ B: Serum amyloid P component (SAP)                                                                                                                                                                   SCOP domains
               CATH domains 2a3wB00 B:1-204  [code=2.60.120.200, no name defined]                                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee.......eeeee........eeeeeeeee......eeeeeeee..eeeeeeeeeee..eeeeee..eeeeee........eeeeeeee....eeeeee..ee...ee...........eeee...........hhhhh..eeeeeeeee....hhhhhhhhhhh.......ee.hhheeeee...eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------S-------------G--G----------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----PTX_2  PDB: B:5-204 UniProt: 24-223                                                                                                                                                                      PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------PTX_1   -------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) 1.1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --Exon 1.2  PDB: B:3-204 UniProt: 22-223                                                                                                                                                                     Transcript 1 (2)
                 2a3w B   1 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200    

Chain C from PDB  Type:PROTEIN  Length:204
 aligned with SAMP_HUMAN | P02743 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:204
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219    
           SAMP_HUMAN    20 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 223
               SCOP domains d2a3wc_ C: Serum amyloid P component (SAP)                                                                                                                                                                   SCOP domains
               CATH domains 2a3wC00 C:1-204  [code=2.60.120.200, no name defined]                                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee.......eeeee........eeeeeeeee......eeeeeeee..eeeeeeeeeee..eeeeee..eeeeee........eeeeeeee....eeeeee..ee...ee...........eeee...........hhhhh..eeeeeeeee....hhhhhhhhhhh.......ee.hhheeeee...eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------S-------------G--G----------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----PTX_2  PDB: C:5-204 UniProt: 24-223                                                                                                                                                                      PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------PTX_1   -------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) 1.1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --Exon 1.2  PDB: C:3-204 UniProt: 22-223                                                                                                                                                                     Transcript 1 (2)
                 2a3w C   1 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200    

Chain D from PDB  Type:PROTEIN  Length:204
 aligned with SAMP_HUMAN | P02743 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:204
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219    
           SAMP_HUMAN    20 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 223
               SCOP domains d2a3wd_ D: Serum amyloid P component (SAP)                                                                                                                                                                   SCOP domains
               CATH domains 2a3wD00 D:1-204  [code=2.60.120.200, no name defined]                                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee.......eeee.........eeeeeeeee......eeeeeeee..eeeeeeeeeee..eeeeee..eeeeee........eeeeeeee....eeeeee..ee...ee...........eeee...........hhhhh..eeeeeeeee....hhhhhhhhhhh.......ee.hhh.eeee...eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------S-------------G--G----------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----PTX_2  PDB: D:5-204 UniProt: 24-223                                                                                                                                                                      PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------PTX_1   -------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) 1.1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --Exon 1.2  PDB: D:3-204 UniProt: 22-223                                                                                                                                                                     Transcript 1 (2)
                 2a3w D   1 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200    

Chain E from PDB  Type:PROTEIN  Length:204
 aligned with SAMP_HUMAN | P02743 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:204
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219    
           SAMP_HUMAN    20 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 223
               SCOP domains d2a3we_ E: Serum amyloid P component (SAP)                                                                                                                                                                   SCOP domains
               CATH domains 2a3wE00 E:1-204  [code=2.60.120.200, no name defined]                                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee.......eeee.........eeeeeeeee......eeeeeeee..eeeeeeeeeee..eeeeee..eeeeee........eeeeeeee....eeeeee..ee...ee...........eeee...........hhhhh..eeeeeeeee....hhhhhhhhhhh.......ee.hhh.eeee...eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------S-------------G--G----------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----PTX_2  PDB: E:5-204 UniProt: 24-223                                                                                                                                                                      PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------PTX_1   -------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) 1.1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --Exon 1.2  PDB: E:3-204 UniProt: 22-223                                                                                                                                                                     Transcript 1 (2)
                 2a3w E   1 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200    

Chain F from PDB  Type:PROTEIN  Length:204
 aligned with SAMP_HUMAN | P02743 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:204
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219    
           SAMP_HUMAN    20 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 223
               SCOP domains d2a3wf_ F: Serum amyloid P component (SAP)                                                                                                                                                                   SCOP domains
               CATH domains 2a3wF00 F:1-204  [code=2.60.120.200, no name defined]                                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee.......eeee.........eeeeeeeee......eeeeeeee..eeeeeeeeeee..eeeeee..eeeeee........eeeeeeee....eeeeee..ee...ee...........eeee...........hhhhh..eeeeeeeee....hhhhhhhhhhh.......ee.hhh.eeee...eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------S-------------G--G----------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----PTX_2  PDB: F:5-204 UniProt: 24-223                                                                                                                                                                      PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------PTX_1   -------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) 1.1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --Exon 1.2  PDB: F:3-204 UniProt: 22-223                                                                                                                                                                     Transcript 1 (2)
                 2a3w F   1 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200    

Chain G from PDB  Type:PROTEIN  Length:204
 aligned with SAMP_HUMAN | P02743 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:204
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219    
           SAMP_HUMAN    20 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 223
               SCOP domains d2a3wg_ G: Serum amyloid P component (SAP)                                                                                                                                                                   SCOP domains
               CATH domains 2a3wG00 G:1-204  [code=2.60.120.200, no name defined]                                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee.......eeee.........eeeeeeeee......eeeeeeee..eeeeeeeeeee..eeeeee..eeeeee........eeeeeeee....eeeeee..ee...ee...........eeee...........hhhhh..eeeeeeeee....hhhhhhhhhh........ee.hhh.eeee...eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------S-------------G--G----------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----PTX_2  PDB: G:5-204 UniProt: 24-223                                                                                                                                                                      PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------PTX_1   -------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) 1.1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --Exon 1.2  PDB: G:3-204 UniProt: 22-223                                                                                                                                                                     Transcript 1 (2)
                 2a3w G   1 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200    

Chain H from PDB  Type:PROTEIN  Length:204
 aligned with SAMP_HUMAN | P02743 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:204
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219    
           SAMP_HUMAN    20 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 223
               SCOP domains d2a3wh_ H: Serum amyloid P component (SAP)                                                                                                                                                                   SCOP domains
               CATH domains 2a3wH00 H:1-204  [code=2.60.120.200, no name defined]                                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee.......eeeee........eeeeeeeee......eeeeeeee..eeeeeeeeeee..eeeeee..eeeeee........eeeeeeee....eeeeee..ee...ee...........eeee...........hhhhh..eeeeeeeee....hhhhhhhhhhh.......ee.hhheeeee...eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------S-------------G--G----------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----PTX_2  PDB: H:5-204 UniProt: 24-223                                                                                                                                                                      PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------PTX_1   -------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) 1.1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --Exon 1.2  PDB: H:3-204 UniProt: 22-223                                                                                                                                                                     Transcript 1 (2)
                 2a3w H   1 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200    

Chain I from PDB  Type:PROTEIN  Length:204
 aligned with SAMP_HUMAN | P02743 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:204
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219    
           SAMP_HUMAN    20 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 223
               SCOP domains d2a3wi_ I: Serum amyloid P component (SAP)                                                                                                                                                                   SCOP domains
               CATH domains 2a3wI00 I:1-204  [code=2.60.120.200, no name defined]                                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee.......eeee.........eeeeeeeee......eeeeeeee..eeeeeeeeeee..eeeeee..eeeeee........eeeeeeee....eeeeee..ee...ee...........eeee...........hhhhh..eeeeeeeee....hhhhhhhhhhh.......ee.hhh.eeee...eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------S-------------G--G----------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----PTX_2  PDB: I:5-204 UniProt: 24-223                                                                                                                                                                      PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------PTX_1   -------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) 1.1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --Exon 1.2  PDB: I:3-204 UniProt: 22-223                                                                                                                                                                     Transcript 1 (2)
                 2a3w I   1 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200    

Chain J from PDB  Type:PROTEIN  Length:204
 aligned with SAMP_HUMAN | P02743 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:204
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219    
           SAMP_HUMAN    20 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 223
               SCOP domains d2a3wj_ J: Serum amyloid P component (SAP)                                                                                                                                                                   SCOP domains
               CATH domains 2a3wJ00 J:1-204  [code=2.60.120.200, no name defined]                                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee.......eeee.........eeeeeeeee......eeeeeeee..eeeeeeeeeee..eeeeee..eeeeee........eeeeeeee....eeeeee..ee...ee...........eeee...........hhhhh..eeeeeeeee....hhhhhhhhhhh.......ee.hhh.eeee...eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------S-------------G--G----------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----PTX_2  PDB: J:5-204 UniProt: 24-223                                                                                                                                                                      PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------PTX_1   -------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) 1.1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --Exon 1.2  PDB: J:3-204 UniProt: 22-223                                                                                                                                                                     Transcript 1 (2)
                 2a3w J   1 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200    

Chain K from PDB  Type:PROTEIN  Length:204
 aligned with SAMP_HUMAN | P02743 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:204
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219    
           SAMP_HUMAN    20 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 223
               SCOP domains d2a3wk_ K: Serum amyloid P component (SAP)                                                                                                                                                                   SCOP domains
               CATH domains 2a3wK00 K:1-204  [code=2.60.120.200, no name defined]                                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee.......eeee.........eeeeeeeee......eeeeeeee..eeeeeeeeeee..eeeeee..eeeeee........eeeeeeee....eeeeee..ee...ee...........eeee...........hhhhh..eeeeeeeee....hhhhhhhhhhh.......ee.hhh.eeee...eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------S-------------G--G----------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----PTX_2  PDB: K:5-204 UniProt: 24-223                                                                                                                                                                      PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------PTX_1   -------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) 1.1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --Exon 1.2  PDB: K:3-204 UniProt: 22-223                                                                                                                                                                     Transcript 1 (2)
                 2a3w K   1 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200    

Chain L from PDB  Type:PROTEIN  Length:204
 aligned with SAMP_HUMAN | P02743 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:204
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219    
           SAMP_HUMAN    20 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 223
               SCOP domains d2a3wl_ L: Serum amyloid P component (SAP)                                                                                                                                                                   SCOP domains
               CATH domains 2a3wL00 L:1-204  [code=2.60.120.200, no name defined]                                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee.......eeee.........eeeeeeeee......eeeeeeee..eeeeeeeeeee..eeeeee..eeeeee........eeeeeeee....eeeeee..ee...ee...........eeee...........hhhhh..eeeeeeeee....hhhhhhhhhhh.......ee.hhh.eeee...eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------S-------------G--G----------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----PTX_2  PDB: L:5-204 UniProt: 24-223                                                                                                                                                                      PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------PTX_1   -------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) 1.1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --Exon 1.2  PDB: L:3-204 UniProt: 22-223                                                                                                                                                                     Transcript 1 (2)
                 2a3w L   1 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200    

Chain M from PDB  Type:PROTEIN  Length:204
 aligned with SAMP_HUMAN | P02743 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:204
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219    
           SAMP_HUMAN    20 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 223
               SCOP domains d2a3wm_ M: Serum amyloid P component (SAP)                                                                                                                                                                   SCOP domains
               CATH domains 2a3wM00 M:1-204  [code=2.60.120.200, no name defined]                                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee.......eeeee........eeeeeeeee......eeeeeeee..eeeeeeeeeee..eeeeee..eeeeee........eeeeeeee....eeeeee..ee...ee...........eeee...........hhhhh..eeeeeeeee....hhhhhhhhhhh.......ee.hhheeeee...eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------S-------------G--G----------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----PTX_2  PDB: M:5-204 UniProt: 24-223                                                                                                                                                                      PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------PTX_1   -------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) 1.1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --Exon 1.2  PDB: M:3-204 UniProt: 22-223                                                                                                                                                                     Transcript 1 (2)
                 2a3w M   1 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200    

Chain N from PDB  Type:PROTEIN  Length:204
 aligned with SAMP_HUMAN | P02743 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:204
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219    
           SAMP_HUMAN    20 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 223
               SCOP domains d2a3wn_ N: Serum amyloid P component (SAP)                                                                                                                                                                   SCOP domains
               CATH domains 2a3wN00 N:1-204  [code=2.60.120.200, no name defined]                                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee.......eeee.........eeeeeeeee......eeeeeeee..eeeeeeeeeee..eeeeee..eeeeee........eeeeeeee....eeeeee..ee...ee...........eeee...........hhhhh..eeeeeeeee....hhhhhhhhhhh.......ee.hhh.eeee...eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------S-------------G--G----------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----PTX_2  PDB: N:5-204 UniProt: 24-223                                                                                                                                                                      PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------PTX_1   -------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) 1.1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --Exon 1.2  PDB: N:3-204 UniProt: 22-223                                                                                                                                                                     Transcript 1 (2)
                 2a3w N   1 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200    

Chain O from PDB  Type:PROTEIN  Length:204
 aligned with SAMP_HUMAN | P02743 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:204
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219    
           SAMP_HUMAN    20 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 223
               SCOP domains d2a3wo_ O: Serum amyloid P component (SAP)                                                                                                                                                                   SCOP domains
               CATH domains 2a3wO00 O:1-204  [code=2.60.120.200, no name defined]                                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee.......eeeee........eeeeeeeee......eeeeeeee..eeeeeeeeeee..eeeeee..eeeeee........eeeeeeee....eeeeee..ee...ee...........eeee...........hhhhh..eeeeeeeee....hhhhhhhhhhh.......ee....eeeee...eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------S-------------G--G----------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----PTX_2  PDB: O:5-204 UniProt: 24-223                                                                                                                                                                      PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------PTX_1   -------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) 1.1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --Exon 1.2  PDB: O:3-204 UniProt: 22-223                                                                                                                                                                     Transcript 1 (2)
                 2a3w O   1 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200    

Chain P from PDB  Type:PROTEIN  Length:204
 aligned with SAMP_HUMAN | P02743 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:204
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219    
           SAMP_HUMAN    20 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 223
               SCOP domains d2a3wp_ P: Serum amyloid P component (SAP)                                                                                                                                                                   SCOP domains
               CATH domains 2a3wP00 P:1-204  [code=2.60.120.200, no name defined]                                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee.......eeeee........eeeeeeeee......eeeeeeee..eeeeeeeeeee..eeeeee..eeeeee........eeeeeeee....eeeeee..ee...ee...........eeee...........hhhhh..eeeeeeeee....hhhhhhhhhhh.......ee....eeeee...eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------S-------------G--G----------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----PTX_2  PDB: P:5-204 UniProt: 24-223                                                                                                                                                                      PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------PTX_1   -------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) 1.1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --Exon 1.2  PDB: P:3-204 UniProt: 22-223                                                                                                                                                                     Transcript 1 (2)
                 2a3w P   1 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200    

Chain Q from PDB  Type:PROTEIN  Length:204
 aligned with SAMP_HUMAN | P02743 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:204
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219    
           SAMP_HUMAN    20 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 223
               SCOP domains d2a3wq_ Q: Serum amyloid P component (SAP)                                                                                                                                                                   SCOP domains
               CATH domains 2a3wQ00 Q:1-204  [code=2.60.120.200, no name defined]                                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee.......eeeee........eeeeeeeee......eeeeeeee..eeeeeeeeeee..eeeeee..eeeeee........eeeeeeee....eeeeee..ee...ee...........eeee...........hhhhh..eeeeeeeee....hhhhhhhhhhh.......ee.hhheeeee...eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------S-------------G--G----------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----PTX_2  PDB: Q:5-204 UniProt: 24-223                                                                                                                                                                      PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------PTX_1   -------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) 1.1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --Exon 1.2  PDB: Q:3-204 UniProt: 22-223                                                                                                                                                                     Transcript 1 (2)
                 2a3w Q   1 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200    

Chain R from PDB  Type:PROTEIN  Length:204
 aligned with SAMP_HUMAN | P02743 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:204
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219    
           SAMP_HUMAN    20 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 223
               SCOP domains d2a3wr_ R: Serum amyloid P component (SAP)                                                                                                                                                                   SCOP domains
               CATH domains 2a3wR00 R:1-204  [code=2.60.120.200, no name defined]                                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee.......eeeee........eeeeeeeee......eeeeeeee..eeeeeeeeeee..eeeeee..eeeeee........eeeeeeee....eeeeee..ee...ee...........eeee...........hhhhh..eeeeeeeee....hhhhhhhhhhh.......ee.hhheeeee...eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------S-------------G--G----------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----PTX_2  PDB: R:5-204 UniProt: 24-223                                                                                                                                                                      PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------PTX_1   -------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) 1.1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --Exon 1.2  PDB: R:3-204 UniProt: 22-223                                                                                                                                                                     Transcript 1 (2)
                 2a3w R   1 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200    

Chain S from PDB  Type:PROTEIN  Length:204
 aligned with SAMP_HUMAN | P02743 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:204
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219    
           SAMP_HUMAN    20 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 223
               SCOP domains d2a3ws_ S: Serum amyloid P component (SAP)                                                                                                                                                                   SCOP domains
               CATH domains 2a3wS00 S:1-204  [code=2.60.120.200, no name defined]                                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee.......eeee.........eeeeeeeee......eeeeeeee..eeeeeeeeeee..eeeeee..eeeeee........eeeeeeee....eeeeee..ee...ee...........eeee...........hhhhh..eeeeeeeee....hhhhhhhhhhh.......ee.hhh.eeee...eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------S-------------G--G----------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----PTX_2  PDB: S:5-204 UniProt: 24-223                                                                                                                                                                      PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------PTX_1   -------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) 1.1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --Exon 1.2  PDB: S:3-204 UniProt: 22-223                                                                                                                                                                     Transcript 1 (2)
                 2a3w S   1 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200    

Chain T from PDB  Type:PROTEIN  Length:204
 aligned with SAMP_HUMAN | P02743 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:204
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219    
           SAMP_HUMAN    20 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 223
               SCOP domains d2a3wt_ T: Serum amyloid P component (SAP)                                                                                                                                                                   SCOP domains
               CATH domains 2a3wT00 T:1-204  [code=2.60.120.200, no name defined]                                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee.......eeee.........eeeeeeeee......eeeeeeee..eeeeeeeeeee..eeeeee..eeeeee........eeeeeeee....eeeeee..ee...ee...........eeee...........hhhhh..eeeeeeeee....hhhhhhhhhhh.......ee.hhh.eeee...eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------S-------------G--G----------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----PTX_2  PDB: T:5-204 UniProt: 24-223                                                                                                                                                                      PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------PTX_1   -------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) 1.1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --Exon 1.2  PDB: T:3-204 UniProt: 22-223                                                                                                                                                                     Transcript 1 (2)
                 2a3w T   1 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200    

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 20)

Asymmetric Unit

(-) CATH Domains  (1, 20)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)
1a2a3wA00A:1-204
1b2a3wB00B:1-204
1c2a3wC00C:1-204
1d2a3wD00D:1-204
1e2a3wE00E:1-204
1f2a3wF00F:1-204
1g2a3wG00G:1-204
1h2a3wH00H:1-204
1i2a3wI00I:1-204
1j2a3wJ00J:1-204
1k2a3wK00K:1-204
1l2a3wL00L:1-204
1m2a3wM00M:1-204
1n2a3wN00N:1-204
1o2a3wO00O:1-204
1p2a3wP00P:1-204
1q2a3wQ00Q:1-204
1r2a3wR00R:1-204
1s2a3wS00S:1-204
1t2a3wT00T:1-204

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2A3W)

(-) Gene Ontology  (26, 26)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T   (SAMP_HUMAN | P02743)
molecular function
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0030246    carbohydrate binding    Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
    GO:0001849    complement component C1q binding    Interacting selectively and non-covalently with the C1q component of the classical complement cascade.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0051082    unfolded protein binding    Interacting selectively and non-covalently with an unfolded protein.
    GO:0046790    virion binding    Interacting selectively and non-covalently with a virion, either by binding to components of the capsid or the viral envelope.
biological process
    GO:0006953    acute-phase response    An acute inflammatory response that involves non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals.
    GO:0044267    cellular protein metabolic process    The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes cellular protein modification.
    GO:0051131    chaperone-mediated protein complex assembly    The aggregation, arrangement and bonding together of a set of components to form a protein complex, mediated by chaperone molecules that do not form part of the finished complex.
    GO:0045087    innate immune response    Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
    GO:0044869    negative regulation by host of viral exo-alpha-sialidase activity    The process in which a host organism decreases viral exo-alpha-sialidase activity, the catalysis of the hydrolysis of peptide bonds in a protein.
    GO:0044871    negative regulation by host of viral glycoprotein metabolic process    A process in which a host organism stops, prevents or reduces the frequency, rate or extent of viral glycoprotein metabolic process.
    GO:0002674    negative regulation of acute inflammatory response    Any process that stops, prevents, or reduces the frequency, rate, or extent of an acute inflammatory response.
    GO:1903016    negative regulation of exo-alpha-sialidase activity    Any process that stops, prevents or reduces the frequency, rate or extent of exo-alpha-sialidase activity.
    GO:1903019    negative regulation of glycoprotein metabolic process    Any process that stops, prevents or reduces the frequency, rate or extent of glycoprotein metabolic process.
    GO:0045656    negative regulation of monocyte differentiation    Any process that stops, prevents, or reduces the frequency, rate or extent of monocyte differentiation.
    GO:0046597    negative regulation of viral entry into host cell    Any process that stops, prevents, or reduces the frequency, rate or extent of the entry of viral entry into a host cell.
    GO:0048525    negative regulation of viral process    Any process that stops, prevents, or reduces the frequency, rate or extent of a multi-organism process in which a virus is a participant.
    GO:0061045    negative regulation of wound healing    Any process that decreases the rate, frequency, or extent of the series of events that restore integrity to a damaged tissue, following an injury.
    GO:0006457    protein folding    The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
cellular component
    GO:0072562    blood microparticle    A phospholipid microvesicle that is derived from any of several cell types, such as platelets, blood cells, endothelial cells, or others, and contains membrane receptors as well as other proteins characteristic of the parental cell. Microparticles are heterogeneous in size, and are characterized as microvesicles free of nucleic acids.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0031012    extracellular matrix    A structure lying external to one or more cells, which provides structural support for cells or tissues.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SAMP_HUMAN | P027431gyk 1lgn 1sac 2a3x 2a3y 2w08 3d5o 3kqr 4avs 4avt 4avv 4ayu

(-) Related Entries Specified in the PDB File

1lgn DECAMERIC DAMP COMPLEX OF HUMAN SERUM AMYLOID P COMPONENT