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(-) Description

Title :  DODECAHEDRON FORMED OF PENTON BASE PROTEIN FROM ADENOVIRUS AD3
 
Authors :  W. P. Burmeister, E. Szolajska, M. Zochowska, B. Nerlo, I. Andreev, G. S J. -P. Andrieu, P. Fender, A. Naskalska, C. Zubieta, S. Cusack, J. Chro
Date :  19 Apr 12  (Deposition) - 24 Oct 12  (Release) - 24 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  4.75
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (60x)
Keywords :  Viral Protein, Capsid Protein, Dsdna Virus, Virus-Like Particle, Strand Swapping (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Szolajska, W. P. Burmeister, M. Zochowska, B. Nerlo, I. Andreev, G. Schoehn, J. P. Andrieu, P. Fender, A. Naskalska, C. Zubieta, S. Cusack, J. Chroboczek
The Structural Basis For The Integrity Of Adenovirus Ad3 Dodecahedron.
Plos One V. 7 46075 2012
PubMed-ID: 23049939  |  Reference-DOI: 10.1371/JOURNAL.PONE.0046075

(-) Compounds

Molecule 1 - L2 PROTEIN III (PENTON BASE)
    Chains: A
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Cell Line: HIGH-FIVE
    Expression System Common: CABBAGE LOOPER
    Expression System Plasmid: BAC PAC6
    Expression System Taxid: 7111
    Expression System Vector Type: BACULOVIRUS
    Fragment: RESIDUES 1-542
    Organism Scientific: HUMAN ADENOVIRUS 3
    Organism Taxid: 45659
    Strain: UNIDENTIFIED
    Synonym: PENTON PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (60x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:451BINDING SITE FOR RESIDUE CA A1001

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4AQQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4AQQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4AQQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4AQQ)

(-) Exons   (0, 0)

(no "Exon" information available for 4AQQ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:462
 aligned with Q2Y0H9_ADE03 | Q2Y0H9 from UniProtKB/TrEMBL  Length:544

    Alignment length:495
                                    57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537     
         Q2Y0H9_ADE03    48 PTEGRNSIRYSELSPLYDTTKLYLVDNKSADIASLNYQNDHSNFLTTVVQNNDFTPTEASTQTINFDERSRWGGQLKTIMHTNMPNVNEYMFSNKFKARVMVSRKAPEGVTVNDTYDHKEDILKYEWFEFILPEGNFSATMTIDLMNNAIIDNYLEIGRQNGVLESDIGVKFDTRNFRLGWDPETKLIMPGVYTYEAFHPDIVLLPGCGVDFTESRLSNLLGIRKRHPFQEGFKIMYEDLEGGNIPALLDVTAYEESKKDTTTETTTLAVAEETSEDDDITRGDTYITEKQKREAAAAEVKKELKIQPLEKDSKSRSYNVLEDKINTAYRSWYLSYNYGNPEKGIRSWTLLTTSDVTCGAEQVYWSLPDMMQDPVTFRSTRQVNNYPVVGAELMPVFSKSFYNEQAVYSQQLRQATSLTHVFNRFPENQILIRPPAPTITTVSENVPALTDHGTLPLRSSIRGVQRVTVTDARRRTCPYVYKALGIVAPRVLSSR 542
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......................ee...hhhhhhhhh.........ee.......hhhhhhhhee.......eeeeeeeeeee..............eeeeeeeee............hhhheeeeeeee........hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.eeeee.........................eeeee....eee....hhhhhh.eee........eee.hhh.........hhhhhhhh..........---------------------------------.............................eehhhhhhhh.........eee..........eeeee.......................eeee..eeeeeee.hhhhhhhhh...............hhhhh......eeeeeee..eeeeeeeee....ee.ee..eeee........eeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4aqq A  48 PTEGRNSIRYSELSPLYDTTKLYLVDNKSADIASLNYQNDHSNFLTTVVQNNDFTPTEASTQTINFDERSRWGGQLKTIMHTNMPNVNEYMFSNKFKARVMVSRKAPEGVTVNDTYDHKEDILKYEWFEFILPEGNFSATMTIDLMNNAIIDNYLEIGRQNGVLESDIGVKFDTRNFRLGWDPETKLIMPGVYTYEAFHPDIVLLPGCGVDFTESRLSNLLGIRKRHPFQEGFKIMYEDLEGGNIPALLDVTAYEESKKDTTTETTT---------------------------------KKELKIQPLEKDSKSRSYNVLEDKINTAYRSWYLSYNYGNPEKGIRSWTLLTTSDVTCGAEQVYWSLPDMMQDPVTFRSTRQVNNYPVVGAELMPVFSKSFYNEQAVYSQQLRQATSLTHVFNRFPENQILIRPPAPTITTVSENVPALTDHGTLPLRSSIRGVQRVTVTDARRRTCPYVYKALGIVAPRVLSSR 542
                                    57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307      |  -         -         -         -|      357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537     
                                                                                                                                                                                                                                                                                                    314                               348
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4AQQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4AQQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4AQQ)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q2Y0H9_ADE03 | Q2Y0H9)
molecular function
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q2Y0H9_ADE03 | Q2Y0H9: 4ar2

(-) Related Entries Specified in the PDB File

4ar2 DODECAHEDRON FORMED OF PENTON BASE PROTEIN FROM ADENOVIRUS AD3