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(-) Description

Title :  CRYSTAL STRUCTURE OF BC2L-A LECTIN FROM BURKOLDERIA CENOCEPACIA IN COMPLEX WITH METHYL-HEPTOSIDE
 
Authors :  R. Marchetti, L. Malinovska, E. Lameignere, C. Decastro, G. Cioci, P. K M. Wimmerova, A. Molinaro, A. Imberty, A. Silipo
Date :  26 Mar 12  (Deposition) - 15 Aug 12  (Release) - 19 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D,E
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,E  (1x)
Biol. Unit 3:  D  (2x)
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Marchetti, L. Malinovska, E. Lameignere, L. Adamova, C. De Castro G. Cioci, C. Stanetty, P. Kosma, A. Molinaro, M. Wimmerova, A. Imberty A. Silipo
Burkholderia Cenocepacia Lectin A Binding To Heptoses From The Bacterial Lipopolysaccharide.
Glycobiology V. 22 1387 2012
PubMed-ID: 22763039  |  Reference-DOI: 10.1093/GLYCOB/CWS105

(-) Compounds

Molecule 1 - BC2L-A LECTIN
    Chains: A, B, C, D, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: BURKHOLDERIA CENOCEPACIA
    Organism Taxid: 331271
    Strain: AU 1054

 Structural Features

(-) Chains, Units

  12345
Asymmetric Unit : ABCDE
Biological Unit 1 (1x): AB   
Biological Unit 2 (1x):   C E
Biological Unit 3 (2x):    D 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 26)

Asymmetric Unit (3, 26)
No.NameCountTypeFull Name
1A1Q5Ligand/IonMETHYL L-GLYCERO-ALPHA-D-MANNO-HEPTOPYRANOSIDE
2CA10Ligand/IonCALCIUM ION
3SO411Ligand/IonSULFATE ION
Biological Unit 1 (2, 5)
No.NameCountTypeFull Name
1A1Q2Ligand/IonMETHYL L-GLYCERO-ALPHA-D-MANNO-HEPTOPYRANOSIDE
2CA-1Ligand/IonCALCIUM ION
3SO43Ligand/IonSULFATE ION
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
1A1Q2Ligand/IonMETHYL L-GLYCERO-ALPHA-D-MANNO-HEPTOPYRANOSIDE
2CA-1Ligand/IonCALCIUM ION
3SO44Ligand/IonSULFATE ION
Biological Unit 3 (2, 10)
No.NameCountTypeFull Name
1A1Q2Ligand/IonMETHYL L-GLYCERO-ALPHA-D-MANNO-HEPTOPYRANOSIDE
2CA-1Ligand/IonCALCIUM ION
3SO48Ligand/IonSULFATE ION

(-) Sites  (26, 26)

Asymmetric Unit (26, 26)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:28 , ASP A:115 , ASN A:117 , ASP A:118 , A1Q A:1131 , GLY B:128BINDING SITE FOR RESIDUE CA A1129
02AC2SOFTWAREGLU A:109 , ASP A:113 , ASP A:115 , ASP A:118 , A1Q A:1131BINDING SITE FOR RESIDUE CA A1130
03AC3SOFTWAREASN A:28 , ALA A:29 , ALA A:30 , GLU A:31 , GLU A:109 , ASP A:110 , HIS A:112 , ASP A:113 , ASP A:115 , ASP A:118 , CA A:1129 , CA A:1130 , GLY B:128BINDING SITE FOR RESIDUE A1Q A1131
04AC4SOFTWAREHIS A:49 , LYS A:50 , ARG A:58BINDING SITE FOR RESIDUE SO4 A1132
05AC5SOFTWAREARG A:85 , HOH A:2027 , ARG B:85BINDING SITE FOR RESIDUE SO4 A1133
06AC6SOFTWAREGLY A:128 , ASN B:28 , ASP B:115 , ASN B:117 , ASP B:118 , CA B:1130 , A1Q B:1131BINDING SITE FOR RESIDUE CA B1129
07AC7SOFTWAREGLU B:109 , ASP B:113 , ASP B:115 , ASP B:118 , CA B:1129 , A1Q B:1131BINDING SITE FOR RESIDUE CA B1130
08AC8SOFTWAREGLY A:128 , ASN B:28 , ALA B:30 , GLU B:31 , GLU B:109 , ASP B:110 , HIS B:112 , ASP B:113 , ASP B:115 , ASP B:118 , CA B:1129 , CA B:1130BINDING SITE FOR RESIDUE A1Q B1131
09AC9SOFTWARELYS A:50 , HIS B:49 , ARG B:58BINDING SITE FOR RESIDUE SO4 B1132
10BC1SOFTWAREASN C:28 , ASP C:115 , ASN C:117 , ASP C:118 , CA C:1130 , A1Q C:1131 , GLY E:128BINDING SITE FOR RESIDUE CA C1129
11BC2SOFTWAREGLU C:109 , ASP C:113 , ASP C:115 , ASP C:118 , CA C:1129 , A1Q C:1131BINDING SITE FOR RESIDUE CA C1130
12BC3SOFTWAREASN C:28 , ALA C:29 , ALA C:30 , GLU C:31 , GLU C:109 , ASP C:110 , HIS C:112 , ASP C:113 , ASP C:115 , ASP C:118 , CA C:1129 , CA C:1130 , GLY E:128BINDING SITE FOR RESIDUE A1Q C1131
13BC4SOFTWAREHIS C:49 , LYS C:50 , ARG C:58BINDING SITE FOR RESIDUE SO4 C1132
14BC5SOFTWAREARG C:85 , PRO C:88 , SO4 C:1134 , ARG E:85BINDING SITE FOR RESIDUE SO4 C1133
15BC6SOFTWAREARG C:85 , SO4 C:1133 , LEU E:86 , PRO E:88 , ASN E:90BINDING SITE FOR RESIDUE SO4 C1134
16BC7SOFTWARELYS D:36 , TYR D:48 , ARG E:58BINDING SITE FOR RESIDUE SO4 D 701
17BC8SOFTWAREASN D:28 , ASP D:115 , ASN D:117 , ASP D:118 , GLY D:128 , A1Q D:1131BINDING SITE FOR RESIDUE CA D1129
18BC9SOFTWAREGLU D:109 , ASP D:113 , ASP D:115 , ASP D:118 , A1Q D:1131BINDING SITE FOR RESIDUE CA D1130
19CC1SOFTWAREASN D:28 , ALA D:29 , ALA D:30 , GLU D:31 , ASP D:110 , HIS D:112 , ASP D:113 , ASP D:115 , ASP D:118 , GLY D:128 , CA D:1129 , CA D:1130BINDING SITE FOR RESIDUE A1Q D1131
20CC2SOFTWAREHIS D:49 , LYS D:50 , ARG D:58BINDING SITE FOR RESIDUE SO4 D1132
21CC3SOFTWAREARG D:85BINDING SITE FOR RESIDUE SO4 D1133
22CC4SOFTWARELYS D:50 , HIS E:49 , LYS E:50 , ARG E:58BINDING SITE FOR RESIDUE SO4 D1134
23CC5SOFTWAREGLY C:128 , ASN E:28 , ASP E:115 , ASN E:117 , ASP E:118 , CA E:1130 , A1Q E:1131BINDING SITE FOR RESIDUE CA E1129
24CC6SOFTWAREGLU E:109 , ASP E:113 , ASP E:115 , ASP E:118 , CA E:1129 , A1Q E:1131BINDING SITE FOR RESIDUE CA E1130
25CC7SOFTWAREGLY C:128 , ASN E:28 , ALA E:29 , ALA E:30 , GLU E:31 , GLU E:109 , ASP E:110 , HIS E:112 , ASP E:113 , ASP E:115 , ASP E:118 , CA E:1129 , CA E:1130BINDING SITE FOR RESIDUE A1Q E1131
26CC8SOFTWAREGLU E:12 , LYS E:68 , ARG E:70 , LYS E:93BINDING SITE FOR RESIDUE SO4 E1132

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4AOC)

(-) Cis Peptide Bonds  (7, 7)

Asymmetric Unit
No.Residues
1Trp A:125 -Pro A:126
2Arg B:9 -Ala B:10
3Gly B:11 -Glu B:12
4Trp B:125 -Pro B:126
5Trp C:125 -Pro C:126
6Trp D:125 -Pro D:126
7Trp E:125 -Pro E:126

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4AOC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4AOC)

(-) Exons   (0, 0)

(no "Exon" information available for 4AOC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:117
 aligned with A0A0H2Y045_B | A0A0H2Y045 from UniProtKB/TrEMBL  Length:129

    Alignment length:117
                                    22        32        42        52        62        72        82        92       102       112       122       
         A0A0H2Y045_B    13 EFSIPPNTDFRAIFFANAAEQQHIKLFIGDSQEPAAYHKLTTRDGPREATLNSGNGKIRFEVSVNGKPSATDARLAPINGKKSDGSPFTVNFGIVVSEDGHDSDYNDGIVVLQWPIG 129
               SCOP domains d4aoca_ A: automated matches                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.....eeeeeeee.....eeeeeee.......eeeeehhhhh.eeeeee....eeeeeeee..ee.eeeeee..eeee.....eeeeeeeeeeee.........eeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 4aoc A  12 EFSIPPNTDFRAIFFANAAEQQHIKLFIGDSQEPAAYHKLTTRDGPREATLNSGNGKIRFEVSVNGKPSATDARLAPINGKKSDGSPFTVNFGIVVSEDGHDSDYNDGIVVLQWPIG 128
                                    21        31        41        51        61        71        81        91       101       111       121       


Chain B from PDB  Type:PROTEIN  Length:120
 aligned with A0A0H2Y045_B | A0A0H2Y045 from UniProtKB/TrEMBL  Length:129

    Alignment length:120
                                    19        29        39        49        59        69        79        89        99       109       119       129
         A0A0H2Y045_B    10 RAGEFSIPPNTDFRAIFFANAAEQQHIKLFIGDSQEPAAYHKLTTRDGPREATLNSGNGKIRFEVSVNGKPSATDARLAPINGKKSDGSPFTVNFGIVVSEDGHDSDYNDGIVVLQWPIG 129
               SCOP domains d4aocb_ B: automated matches                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eee.....eeeeeeee.....eeeeeee.......eeeeehhhhh.eeeeee....eeeeeeee..ee.eeeeee..eeee.....eeeeeeeeeeee.........eeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 4aoc B   9 RAGEFSIPPNTDFRAIFFANAAEQQHIKLFIGDSQEPAAYHKLTTRDGPREATLNSGNGKIRFEVSVNGKPSATDARLAPINGKKSDGSPFTVNFGIVVSEDGHDSDYNDGIVVLQWPIG 128
                                    18        28        38        48        58        68        78        88        98       108       118       128


Chain C from PDB  Type:PROTEIN  Length:120
 aligned with A0A0H2Y045_B | A0A0H2Y045 from UniProtKB/TrEMBL  Length:129

    Alignment length:120
                                    19        29        39        49        59        69        79        89        99       109       119       129
         A0A0H2Y045_B    10 RAGEFSIPPNTDFRAIFFANAAEQQHIKLFIGDSQEPAAYHKLTTRDGPREATLNSGNGKIRFEVSVNGKPSATDARLAPINGKKSDGSPFTVNFGIVVSEDGHDSDYNDGIVVLQWPIG 129
               SCOP domains d4aocc_ C: automated matches                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eee.....eeeeeeee.....eeeeeee.......eeeeehhhhh.eeeeee....eeeeeeee..ee.eeeeee..eeee.....eeeeeeeeeeee.........eeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 4aoc C   9 RAGEFSIPPNTDFRAIFFANAAEQQHIKLFIGDSQEPAAYHKLTTRDGPREATLNSGNGKIRFEVSVNGKPSATDARLAPINGKKSDGSPFTVNFGIVVSEDGHDSDYNDGIVVLQWPIG 128
                                    18        28        38        48        58        68        78        88        98       108       118       128


Chain D from PDB  Type:PROTEIN  Length:118
 aligned with A0A0H2Y045_B | A0A0H2Y045 from UniProtKB/TrEMBL  Length:129

    Alignment length:118
                                    21        31        41        51        61        71        81        91       101       111       121        
         A0A0H2Y045_B    12 GEFSIPPNTDFRAIFFANAAEQQHIKLFIGDSQEPAAYHKLTTRDGPREATLNSGNGKIRFEVSVNGKPSATDARLAPINGKKSDGSPFTVNFGIVVSEDGHDSDYNDGIVVLQWPIG 129
               SCOP domains d4aocd_ D: automated matches                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.....eeeeeeee.....eeeeeee.......eeeeehhhhh.eeeeee....eeeeeeee..ee.eeeeee..eeee.....eeeeeeeeeeee.........eeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 4aoc D  11 GEFSIPPNTDFRAIFFANAAEQQHIKLFIGDSQEPAAYHKLTTRDGPREATLNSGNGKIRFEVSVNGKPSATDARLAPINGKKSDGSPFTVNFGIVVSEDGHDSDYNDGIVVLQWPIG 128
                                    20        30        40        50        60        70        80        90       100       110       120        


Chain E from PDB  Type:PROTEIN  Length:121
 aligned with A0A0H2Y045_B | A0A0H2Y045 from UniProtKB/TrEMBL  Length:129

    Alignment length:121
                                    18        28        38        48        58        68        78        88        98       108       118       128 
         A0A0H2Y045_B     9 NRAGEFSIPPNTDFRAIFFANAAEQQHIKLFIGDSQEPAAYHKLTTRDGPREATLNSGNGKIRFEVSVNGKPSATDARLAPINGKKSDGSPFTVNFGIVVSEDGHDSDYNDGIVVLQWPIG 129
               SCOP domains d4aoce_ E: automated matches                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.....eeeeeeee.....eeeeeee.......eeeeehhhhh.eeeeee....eeeeeeee..ee.eeeeee..eeee.....eeeeeeeeeeee.........eeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------- Transcript
                 4aoc E   8 NRAGEFSIPPNTDFRAIFFANAAEQQHIKLFIGDSQEPAAYHKLTTRDGPREATLNSGNGKIRFEVSVNGKPSATDARLAPINGKKSDGSPFTVNFGIVVSEDGHDSDYNDGIVVLQWPIG 128
                                    17        27        37        47        57        67        77        87        97       107       117       127
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 5)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4AOC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4AOC)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4AOC)

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