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4AOC
Biol. Unit 3
Info
Asym.Unit (107 KB)
Biol.Unit 1 (43 KB)
Biol.Unit 2 (43 KB)
Biol.Unit 3 (42 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BC2L-A LECTIN FROM BURKOLDERIA CENOCEPACIA IN COMPLEX WITH METHYL-HEPTOSIDE
Authors
:
R. Marchetti, L. Malinovska, E. Lameignere, C. Decastro, G. Cioci, P. K M. Wimmerova, A. Molinaro, A. Imberty, A. Silipo
Date
:
26 Mar 12 (Deposition) - 15 Aug 12 (Release) - 19 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,E (1x)
Biol. Unit 3: D (2x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Marchetti, L. Malinovska, E. Lameignere, L. Adamova, C. De Castro G. Cioci, C. Stanetty, P. Kosma, A. Molinaro, M. Wimmerova, A. Imberty A. Silipo
Burkholderia Cenocepacia Lectin A Binding To Heptoses From The Bacterial Lipopolysaccharide.
Glycobiology V. 22 1387 2012
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: METHYL L-GLYCERO-ALPHA-D-MANNO-HEP... (A1Qa)
1b: METHYL L-GLYCERO-ALPHA-D-MANNO-HEP... (A1Qb)
1c: METHYL L-GLYCERO-ALPHA-D-MANNO-HEP... (A1Qc)
1d: METHYL L-GLYCERO-ALPHA-D-MANNO-HEP... (A1Qd)
1e: METHYL L-GLYCERO-ALPHA-D-MANNO-HEP... (A1Qe)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
2i: CALCIUM ION (CAi)
2j: CALCIUM ION (CAj)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
View:
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Label:
No.
Name
Count
Type
Full Name
1
A1Q
2
Ligand/Ion
METHYL L-GLYCERO-ALPHA-D-MANNO-HEPTOPYRANOSIDE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
SO4
8
Ligand/Ion
SULFATE ION
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Sites
(7, 7)
Info
All Sites
1: BC7 (SOFTWARE)
2: BC8 (SOFTWARE)
3: BC9 (SOFTWARE)
4: CC1 (SOFTWARE)
5: CC2 (SOFTWARE)
6: CC3 (SOFTWARE)
7: CC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
BC7
SOFTWARE
LYS D:36 , TYR D:48 , ARG E:58
BINDING SITE FOR RESIDUE SO4 D 701
2
BC8
SOFTWARE
ASN D:28 , ASP D:115 , ASN D:117 , ASP D:118 , GLY D:128 , A1Q D:1131
BINDING SITE FOR RESIDUE CA D1129
3
BC9
SOFTWARE
GLU D:109 , ASP D:113 , ASP D:115 , ASP D:118 , A1Q D:1131
BINDING SITE FOR RESIDUE CA D1130
4
CC1
SOFTWARE
ASN D:28 , ALA D:29 , ALA D:30 , GLU D:31 , ASP D:110 , HIS D:112 , ASP D:113 , ASP D:115 , ASP D:118 , GLY D:128 , CA D:1129 , CA D:1130
BINDING SITE FOR RESIDUE A1Q D1131
5
CC2
SOFTWARE
HIS D:49 , LYS D:50 , ARG D:58
BINDING SITE FOR RESIDUE SO4 D1132
6
CC3
SOFTWARE
ARG D:85
BINDING SITE FOR RESIDUE SO4 D1133
7
CC4
SOFTWARE
LYS D:50 , HIS E:49 , LYS E:50 , ARG E:58
BINDING SITE FOR RESIDUE SO4 D1134
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 5)
Info
All SCOP Domains
1a: SCOP_d4aoca_ (A:)
1b: SCOP_d4aocb_ (B:)
1c: SCOP_d4aocc_ (C:)
1d: SCOP_d4aocd_ (D:)
1e: SCOP_d4aoce_ (E:)
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Class
:
All beta proteins
(24004)
Fold
:
Calcium-mediated lectin
(32)
Superfamily
:
Calcium-mediated lectin
(32)
Family
:
automated matches
(7)
Protein domain
:
automated matches
(7)
Burkholderia cenocepacia [TaxId: 216591]
(5)
1a
d4aoca_
A:
1b
d4aocb_
B:
1c
d4aocc_
C:
1d
d4aocd_
D:
1e
d4aoce_
E:
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CATH Domains
(0, 0)
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Pfam Domains
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Chain D
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Asym.Unit (107 KB)
Header - Asym.Unit
Biol.Unit 1 (43 KB)
Header - Biol.Unit 1
Biol.Unit 2 (43 KB)
Header - Biol.Unit 2
Biol.Unit 3 (42 KB)
Header - Biol.Unit 3
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