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(-) Description

Title :  CAPITELLA TELETA ACHBP IN COMPLEX WITH LOBELINE
 
Authors :  M. Brams, C. Ulens, R. Spurny
Date :  19 Jan 12  (Deposition) - 30 May 12  (Release) - 20 Jun 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.88
Chains :  Asym./Biol. Unit :  A,B,C,D,E
Keywords :  Acetylcholine-Binding Protein, Nicotinic Receptor, Ion Channel (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Billen, R. Spurny, M. Brams, R. Van Elk, S. Valera-Kummer, J. L. Yakel, T. Voets, D. Bertrand, A. B. Smit, C. Ulens
Molecular Actions Of Smoking Cessation Drugs At Alpha4Beta2 Nicotinic Receptors Defined In Crystal Structures Of A Homologous Binding Protein.
Proc. Natl. Acad. Sci. Usa V. 109 9173 2012
PubMed-ID: 22619328  |  Reference-DOI: 10.1073/PNAS.1116397109

(-) Compounds

Molecule 1 - ACHBP
    Chains: A, B, C, D, E
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF21
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Expression System Vector: PFASTBAC
    Expression System Vector Type: PLASMID
    Fragment: ACETYLCHOLINE BINDING DOMAIN
    Organism Scientific: CAPITELLA TELETA
    Organism Taxid: 283909

 Structural Features

(-) Chains, Units

  12345
Asymmetric/Biological Unit : ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 23)

Asymmetric/Biological Unit (4, 23)
No.NameCountTypeFull Name
1BMA4Ligand/IonBETA-D-MANNOSE
2L0B5Ligand/IonALPHA-LOBELINE
3MAN4Ligand/IonALPHA-D-MANNOSE
4NAG10Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPHE A:102 , PHE A:150 , GLY A:151 , SER A:152 , TRP A:153 , TYR A:194 , CYS A:197 , TYR A:201 , GLU A:203 , HOH A:2147 , ILE B:118 , LEU B:126 , ILE B:128BINDING SITE FOR RESIDUE L0B A1216
02AC2SOFTWAREPHE B:102 , PHE B:150 , GLY B:151 , SER B:152 , TRP B:153 , TYR B:194 , CYS B:197 , TYR B:201 , GLU B:203 , HOH B:2127 , ILE C:118 , LEU C:126 , ILE C:128BINDING SITE FOR RESIDUE L0B B1218
03AC3SOFTWAREPHE C:102 , PHE C:150 , GLY C:151 , SER C:152 , TRP C:153 , TYR C:194 , CYS C:197 , TYR C:201 , HOH C:2151 , ILE D:118 , LEU D:126 , ILE D:128BINDING SITE FOR RESIDUE L0B C1218
04AC4SOFTWAREPHE D:102 , PHE D:150 , GLY D:151 , SER D:152 , TRP D:153 , TYR D:194 , CYS D:197 , TYR D:201 , HOH D:2121 , ILE E:118 , LEU E:126 , ILE E:128BINDING SITE FOR RESIDUE L0B D1218
05AC5SOFTWAREILE A:118 , LEU A:126 , ILE A:128 , HOH A:2100 , PHE E:102 , PHE E:150 , GLY E:151 , SER E:152 , TRP E:153 , TYR E:194 , CYS E:197 , TYR E:201 , GLU E:203BINDING SITE FOR RESIDUE L0B E1218
06AC6SOFTWAREPHE A:120 , ASN A:122 , THR A:124 , HOH B:2018 , SER C:1 , ASN C:2BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 122 RESIDUES 1214 TO 1215
07AC7SOFTWAREPHE B:120 , ASN B:122 , THR B:124 , ASP B:166 , HOH B:2081 , HOH B:2083 , ASP D:166 , ASP D:167 , BMA D:1216BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 122 RESIDUES 1214 TO 1217
08AC8SOFTWAREPHE C:120 , ASN C:122 , THR C:124 , HOH C:2058 , HOH C:2101 , HOH C:2103 , HOH C:2150 , GLU D:181 , ARG D:211BINDING SITE FOR CHAIN C OF SUGAR BOUND TO ASN C 122 RESIDUES 1214 TO 1217
09AC9SOFTWAREMAN B:1217 , GLU C:181 , HOH C:2133 , PHE D:120 , ASN D:122 , THR D:124 , LEU D:126 , HOH D:2041BINDING SITE FOR CHAIN D OF SUGAR BOUND TO ASN D 122 RESIDUES 1214 TO 1217
10BC1SOFTWARESER D:1 , ASN D:2 , ASN E:122 , THR E:124BINDING SITE FOR CHAIN E OF SUGAR BOUND TO ASN E 122 RESIDUES 1214 TO 1217

(-) SS Bonds  (10, 10)

Asymmetric/Biological Unit
No.Residues
1A:137 -A:146
2A:196 -A:197
3B:137 -B:146
4B:196 -B:197
5C:137 -C:146
6C:196 -C:197
7D:137 -D:146
8D:196 -D:197
9E:137 -E:146
10E:196 -E:197

(-) Cis Peptide Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1Pro A:80 -Pro A:81
2Pro B:80 -Pro B:81
3Pro C:80 -Pro C:81
4Pro D:80 -Pro D:81
5Pro E:80 -Pro E:81

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4AFH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4AFH)

(-) Exons   (0, 0)

(no "Exon" information available for 4AFH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:213
 aligned with I6L8L2_CAPTE | I6L8L2 from UniProtKB/TrEMBL  Length:230

    Alignment length:213
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210   
         I6L8L2_CAPTE     1 SNGLMAKRLRRELLNTYEQLGKSGLPFLDDIGKVDVKFGLSLQLLKSIEQRGMGFNSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEISPDEIWTPDIKLFNSVDLDMTLDRTTQAIVFSNGTVLWIPPAVLKVLCVSQDDVDSCHFQFGSWVYSVDEVDIHFMDDKAEVLLDFYQDSLEILENSAQRQEVVYPCCESAYVEMKYLLALRSE 213
               SCOP domains d4afha_ A: automated matches                                                                                                                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh............eeeeeeeeeeeeeeeee.....eeeeeeeeeeeeeee.hhhh..........eeeehhhhh....eee........ee.....eeee...eeee..eeeeeeeeeee..eeeeeeeeee.......eeeee.hhh.............eeeeeeeeeee........eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4afh A   1 SNGLMAKRLRRELLNTYEQLGKSGLPFLDDIGKVDVKFGLSLQLLKSIEQRGMGFNSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEISPDEIWTPDIKLFNSVDLDMTLDRTTQAIVFSNGTVLWIPPAVLKVLCVSQDDVDSCHFQFGSWVYSVDEVDIHFMDDKAEVLLDFYQDSLEILENSAQRQEVVYPCCESAYVEMKYLLALRSE 213
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210   


Chain B from PDB  Type:PROTEIN  Length:213
 aligned with I6L8L2_CAPTE | I6L8L2 from UniProtKB/TrEMBL  Length:230

    Alignment length:213
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210   
         I6L8L2_CAPTE     1 SNGLMAKRLRRELLNTYEQLGKSGLPFLDDIGKVDVKFGLSLQLLKSIEQRGMGFNSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEISPDEIWTPDIKLFNSVDLDMTLDRTTQAIVFSNGTVLWIPPAVLKVLCVSQDDVDSCHFQFGSWVYSVDEVDIHFMDDKAEVLLDFYQDSLEILENSAQRQEVVYPCCESAYVEMKYLLALRSE 213
               SCOP domains d4afhb_ B: automated matches                                                                                                                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh............eeeeeeeeeeeeeeeee.....eeeeeeeeeeeeeee.hhhh..........eeeehhhhh....eee........ee.....eeee...eeee..eeeeeeeeeee..eeeeeeeeee.......eeeee.hhh.............eeeeeeeeeee........eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4afh B   1 SNGLMAKRLRRELLNTYEQLGKSGLPFLDDIGKVDVKFGLSLQLLKSIEQRGMGFNSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEISPDEIWTPDIKLFNSVDLDMTLDRTTQAIVFSNGTVLWIPPAVLKVLCVSQDDVDSCHFQFGSWVYSVDEVDIHFMDDKAEVLLDFYQDSLEILENSAQRQEVVYPCCESAYVEMKYLLALRSE 213
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210   


Chain C from PDB  Type:PROTEIN  Length:213
 aligned with I6L8L2_CAPTE | I6L8L2 from UniProtKB/TrEMBL  Length:230

    Alignment length:213
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210   
         I6L8L2_CAPTE     1 SNGLMAKRLRRELLNTYEQLGKSGLPFLDDIGKVDVKFGLSLQLLKSIEQRGMGFNSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEISPDEIWTPDIKLFNSVDLDMTLDRTTQAIVFSNGTVLWIPPAVLKVLCVSQDDVDSCHFQFGSWVYSVDEVDIHFMDDKAEVLLDFYQDSLEILENSAQRQEVVYPCCESAYVEMKYLLALRSE 213
               SCOP domains d4afhc_ C: automated matches                                                                                                                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh............eeeeeeeeeeeeeeeee.....eeeeeeeeeeeeeee.hhhh..........eeeehhhhh....eee........ee.....eeee...eeee..eeeeeeeeeee..eeeeeeeeee.......eeeee.hhh.............eeeeeeeeeee........eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4afh C   1 SNGLMAKRLRRELLNTYEQLGKSGLPFLDDIGKVDVKFGLSLQLLKSIEQRGMGFNSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEISPDEIWTPDIKLFNSVDLDMTLDRTTQAIVFSNGTVLWIPPAVLKVLCVSQDDVDSCHFQFGSWVYSVDEVDIHFMDDKAEVLLDFYQDSLEILENSAQRQEVVYPCCESAYVEMKYLLALRSE 213
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210   


Chain D from PDB  Type:PROTEIN  Length:213
 aligned with I6L8L2_CAPTE | I6L8L2 from UniProtKB/TrEMBL  Length:230

    Alignment length:213
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210   
         I6L8L2_CAPTE     1 SNGLMAKRLRRELLNTYEQLGKSGLPFLDDIGKVDVKFGLSLQLLKSIEQRGMGFNSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEISPDEIWTPDIKLFNSVDLDMTLDRTTQAIVFSNGTVLWIPPAVLKVLCVSQDDVDSCHFQFGSWVYSVDEVDIHFMDDKAEVLLDFYQDSLEILENSAQRQEVVYPCCESAYVEMKYLLALRSE 213
               SCOP domains d4afhd_ D: automated matches                                                                                                                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh............eeeeeeeeeeeeeeeee.....eeeeeeeeeeeeeee.hhhh..........eeeehhhhh....eee........ee.....eeee...eeee..eeeeeeeeeee..eeeeeeeeee.......eeeee.hhh.............eeeeeeeeeee........eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4afh D   1 SNGLMAKRLRRELLNTYEQLGKSGLPFLDDIGKVDVKFGLSLQLLKSIEQRGMGFNSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEISPDEIWTPDIKLFNSVDLDMTLDRTTQAIVFSNGTVLWIPPAVLKVLCVSQDDVDSCHFQFGSWVYSVDEVDIHFMDDKAEVLLDFYQDSLEILENSAQRQEVVYPCCESAYVEMKYLLALRSE 213
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210   


Chain E from PDB  Type:PROTEIN  Length:212
 aligned with I6L8L2_CAPTE | I6L8L2 from UniProtKB/TrEMBL  Length:230

    Alignment length:212
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211  
         I6L8L2_CAPTE     2 NGLMAKRLRRELLNTYEQLGKSGLPFLDDIGKVDVKFGLSLQLLKSIEQRGMGFNSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEISPDEIWTPDIKLFNSVDLDMTLDRTTQAIVFSNGTVLWIPPAVLKVLCVSQDDVDSCHFQFGSWVYSVDEVDIHFMDDKAEVLLDFYQDSLEILENSAQRQEVVYPCCESAYVEMKYLLALRSE 213
               SCOP domains d4afhe_ E: automated matches                                                                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh............eeeeeeeeeeeeeeeee.....eeeeeeeeeeeeeee.hhhh..........eeeehhhhh....eee........ee.....eeee...eeee..eeeeeeeeeee..eeeeeeeeee.......eeeee.hhh.............eeeeeeeeeee........eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4afh E   2 NGLMAKRLRRELLNTYEQLGKSGLPFLDDIGKVDVKFGLSLQLLKSIEQRGMGFNSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEISPDEIWTPDIKLFNSVDLDMTLDRTTQAIVFSNGTVLWIPPAVLKVLCVSQDDVDSCHFQFGSWVYSVDEVDIHFMDDKAEVLLDFYQDSLEILENSAQRQEVVYPCCESAYVEMKYLLALRSE 213
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 5)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4AFH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4AFH)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E   (I6L8L2_CAPTE | I6L8L2)
molecular function
    GO:0005230    extracellular ligand-gated ion channel activity    Enables the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts.
biological process
    GO:0034220    ion transmembrane transport    A process in which an ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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  4afh
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        I6L8L2_CAPTE | I6L8L2: 4afg 4b5d

(-) Related Entries Specified in the PDB File

4afg CAPITELLA TELETA ACHBP IN COMPLEX WITH VARENICLINE