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(-) Description

Title :  CAPITELLA TELETA ACHBP IN COMPLEX WITH VARENICLINE
 
Authors :  M. Brams, C. Ulens, R. Spurny
Date :  19 Jan 12  (Deposition) - 30 May 12  (Release) - 20 Jun 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B,C,D,E
Keywords :  Acetylcholine-Binding Protein, Nicotinic Receptor, Ion Channel (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  B. Billen, R. Spurny, M. Brams, R. Van Elk, S. Valera-Kummer, J. L. Yakel, T. Voets, D. Bertrand, A. B. Smit, C. Ulens
Molecular Actions Of Smoking Cessation Drugs At Alpha4Beta2 Nicotinic Receptors Defined In Crystal Structures Of A Homologous Binding Protein.
Proc. Natl. Acad. Sci. Usa V. 109 9173 2012
PubMed-ID: 22619328  |  Reference-DOI: 10.1073/PNAS.1116397109

(-) Compounds

Molecule 1 - CAPITELLA TELETA ACHBP
    ChainsA, B, C, D, E
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System Cell LineSF21
    Expression System CommonFALL ARMYWORM
    Expression System Taxid7108
    Expression System VectorPFASTBAC
    Expression System Vector TypePLASMID
    Organism ScientificCAPITELLA TELETA
    Organism Taxid283909

 Structural Features

(-) Chains, Units

  12345
Asymmetric/Biological Unit ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 20)

Asymmetric/Biological Unit (4, 20)
No.NameCountTypeFull Name
1BMA4Ligand/IonBETA-D-MANNOSE
2MAN1Ligand/IonALPHA-D-MANNOSE
3NAG10Ligand/IonN-ACETYL-D-GLUCOSAMINE
4QMR5Ligand/IonVARENICLINE

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:152 , TRP A:153 , VAL A:154 , TYR A:194 , CYS A:197 , TYR A:201 , HOH A:2117 , HOH A:2118 , ILE B:118 , ILE B:128BINDING SITE FOR RESIDUE QMR A1214
02AC2SOFTWAREILE A:118 , ILE A:128 , HOH A:2100 , HOH B:2105 , TRP E:153 , VAL E:154 , CYS E:197 , TYR E:201BINDING SITE FOR RESIDUE QMR B1214
03AC3SOFTWAREHOH C:2103 , HOH C:2104 , SER D:152 , TRP D:153 , CYS D:197 , TYR D:201 , ILE E:118 , ILE E:128BINDING SITE FOR RESIDUE QMR C1214
04AC4SOFTWARETRP C:153 , CYS C:197 , TYR C:201 , HOH C:2076 , HOH C:2077 , ILE D:118 , ILE D:128BINDING SITE FOR RESIDUE QMR D1214
05AC5SOFTWARETRP B:153 , CYS B:197 , TYR B:201 , HOH B:2078 , ILE C:118 , ILE C:128BINDING SITE FOR RESIDUE QMR E1214
06AC6SOFTWAREPHE A:120 , ASN A:122 , THR A:124 , HOH A:2103 , HOH A:2157 , GLU E:198BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 122 RESIDUES 677 TO 678
07AC7SOFTWAREPHE B:120 , ASN B:122 , THR B:124 , ASP B:166 , ASP D:166 , ASP D:167 , HOH D:2087BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 122 RESIDUES 677 TO 680
08AC8SOFTWAREGLU B:198 , HOH B:2102 , PHE C:120 , ASN C:122 , THR C:124 , GLU D:181 , HOH D:2093BINDING SITE FOR CHAIN C OF SUGAR BOUND TO ASN C 122 RESIDUES 677 TO 679
09AC9SOFTWAREGLU C:181 , LEU C:183 , GLU C:198 , ARG C:211 , HOH C:2090 , PHE D:120 , ASN D:122 , THR D:124 , HOH D:2072BINDING SITE FOR CHAIN D OF SUGAR BOUND TO ASN D 122 RESIDUES 677 TO 680
10BC1SOFTWAREGLU D:198 , PHE E:120 , ASN E:122 , THR E:124 , HOH E:2064 , HOH E:2113BINDING SITE FOR CHAIN E OF SUGAR BOUND TO ASN E 122 RESIDUES 677 TO 678

(-) SS Bonds  (10, 10)

Asymmetric/Biological Unit
No.Residues
1A:137 -A:146
2A:196 -A:197
3B:137 -B:146
4B:196 -B:197
5C:137 -C:146
6C:196 -C:197
7D:137 -D:146
8D:196 -D:197
9E:137 -E:146
10E:196 -E:197

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Pro A:80 -Pro A:81
2Pro B:80 -Pro B:81
3Leu C:28 -Asp C:29
4Pro C:80 -Pro C:81
5Pro D:80 -Pro D:81
6Pro E:80 -Pro E:81

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4AFG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4AFG)

(-) Exons   (0, 0)

(no "Exon" information available for 4AFG)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:212
 aligned with I6L8L2_CAPTE | I6L8L2 from UniProtKB/TrEMBL  Length:230

    Alignment length:212
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211  
         I6L8L2_CAPTE     2 NGLMAKRLRRELLNTYEQLGKSGLPFLDDIGKVDVKFGLSLQLLKSIEQRGMGFNSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEISPDEIWTPDIKLFNSVDLDMTLDRTTQAIVFSNGTVLWIPPAVLKVLCVSQDDVDSCHFQFGSWVYSVDEVDIHFMDDKAEVLLDFYQDSLEILENSAQRQEVVYPCCESAYVEMKYLLALRSE 213
               SCOP domains d4afga_ A: automated matches                                                                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh............eeeeeeeeeeeeeeeee.....eeeeeeeeeeeeeee.hhhh..........eeee.........eee........ee.....eeee...eeee..eeeeeeeeeee..eeeeeeeeee.......eeeee.hhh.............eeeeeeeeeeee......eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4afg A   2 NGLMAKRLRRELLNTYEQLGKSGLPFLDDIGKVDVKFGLSLQLLKSIEQRGMGFNSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEISPDEIWTPDIKLFNSVDLDMTLDRTTQAIVFSNGTVLWIPPAVLKVLCVSQDDVDSCHFQFGSWVYSVDEVDIHFMDDKAEVLLDFYQDSLEILENSAQRQEVVYPCCESAYVEMKYLLALRSE 213
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211  

Chain B from PDB  Type:PROTEIN  Length:212
 aligned with I6L8L2_CAPTE | I6L8L2 from UniProtKB/TrEMBL  Length:230

    Alignment length:212
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211  
         I6L8L2_CAPTE     2 NGLMAKRLRRELLNTYEQLGKSGLPFLDDIGKVDVKFGLSLQLLKSIEQRGMGFNSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEISPDEIWTPDIKLFNSVDLDMTLDRTTQAIVFSNGTVLWIPPAVLKVLCVSQDDVDSCHFQFGSWVYSVDEVDIHFMDDKAEVLLDFYQDSLEILENSAQRQEVVYPCCESAYVEMKYLLALRSE 213
               SCOP domains d4afgb_ B: automated matches                                                                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh............eeeeeeeeeeeeeeeee.....eeeeeeeeeeeeeee.hhhh..........eeeehhhhh....eee........ee.....eeee...eeee..eeeeeeeeeee..eeeeeeeeee.......eeeee.hhh.............eeeeeeeeeeee......eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4afg B   2 NGLMAKRLRRELLNTYEQLGKSGLPFLDDIGKVDVKFGLSLQLLKSIEQRGMGFNSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEISPDEIWTPDIKLFNSVDLDMTLDRTTQAIVFSNGTVLWIPPAVLKVLCVSQDDVDSCHFQFGSWVYSVDEVDIHFMDDKAEVLLDFYQDSLEILENSAQRQEVVYPCCESAYVEMKYLLALRSE 213
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211  

Chain C from PDB  Type:PROTEIN  Length:212
 aligned with I6L8L2_CAPTE | I6L8L2 from UniProtKB/TrEMBL  Length:230

    Alignment length:212
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211  
         I6L8L2_CAPTE     2 NGLMAKRLRRELLNTYEQLGKSGLPFLDDIGKVDVKFGLSLQLLKSIEQRGMGFNSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEISPDEIWTPDIKLFNSVDLDMTLDRTTQAIVFSNGTVLWIPPAVLKVLCVSQDDVDSCHFQFGSWVYSVDEVDIHFMDDKAEVLLDFYQDSLEILENSAQRQEVVYPCCESAYVEMKYLLALRSE 213
               SCOP domains d4afgc_ C: automated matches                                                                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh............eeeeeeeeeeeeeeeee.....eeeeeeeeeeeeeee.hhhh..........eeee.........eee........ee.....eeee...eeee..eeeeeeeeeee..eeeeeeeeee.......eeeee.hhh.............eeeeeeeeeeee......eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4afg C   2 NGLMAKRLRRELLNTYEQLGKSGLPFLDDIGKVDVKFGLSLQLLKSIEQRGMGFNSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEISPDEIWTPDIKLFNSVDLDMTLDRTTQAIVFSNGTVLWIPPAVLKVLCVSQDDVDSCHFQFGSWVYSVDEVDIHFMDDKAEVLLDFYQDSLEILENSAQRQEVVYPCCESAYVEMKYLLALRSE 213
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211  

Chain D from PDB  Type:PROTEIN  Length:212
 aligned with I6L8L2_CAPTE | I6L8L2 from UniProtKB/TrEMBL  Length:230

    Alignment length:212
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211  
         I6L8L2_CAPTE     2 NGLMAKRLRRELLNTYEQLGKSGLPFLDDIGKVDVKFGLSLQLLKSIEQRGMGFNSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEISPDEIWTPDIKLFNSVDLDMTLDRTTQAIVFSNGTVLWIPPAVLKVLCVSQDDVDSCHFQFGSWVYSVDEVDIHFMDDKAEVLLDFYQDSLEILENSAQRQEVVYPCCESAYVEMKYLLALRSE 213
               SCOP domains d4afgd_ D: automated matches                                                                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh............eeeeeeeeeeeeeeeee.....eeeeeeeeeeeeeee.hhhh..........eeeehhhhh....eee........ee.....eeee...eeee..eeeeeeeeeee..eeeeeeeeee.......eeeee.hhh.............eeeeeeeeeee........eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4afg D   2 NGLMAKRLRRELLNTYEQLGKSGLPFLDDIGKVDVKFGLSLQLLKSIEQRGMGFNSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEISPDEIWTPDIKLFNSVDLDMTLDRTTQAIVFSNGTVLWIPPAVLKVLCVSQDDVDSCHFQFGSWVYSVDEVDIHFMDDKAEVLLDFYQDSLEILENSAQRQEVVYPCCESAYVEMKYLLALRSE 213
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211  

Chain E from PDB  Type:PROTEIN  Length:212
 aligned with I6L8L2_CAPTE | I6L8L2 from UniProtKB/TrEMBL  Length:230

    Alignment length:212
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211  
         I6L8L2_CAPTE     2 NGLMAKRLRRELLNTYEQLGKSGLPFLDDIGKVDVKFGLSLQLLKSIEQRGMGFNSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEISPDEIWTPDIKLFNSVDLDMTLDRTTQAIVFSNGTVLWIPPAVLKVLCVSQDDVDSCHFQFGSWVYSVDEVDIHFMDDKAEVLLDFYQDSLEILENSAQRQEVVYPCCESAYVEMKYLLALRSE 213
               SCOP domains d4afge_ E: automated matches                                                                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh............eeeeeeeeeeeeeeeee.....eeeeeeeeeeeeeee.hhhh..........eeeehhhhh....eee........ee.....eeee...eeee..eeeeeeeeeee..eeeeeeeeee.......eeeee.hhh.............eeeeeeeeeeee......eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4afg E   2 NGLMAKRLRRELLNTYEQLGKSGLPFLDDIGKVDVKFGLSLQLLKSIEQRGMGFNSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEISPDEIWTPDIKLFNSVDLDMTLDRTTQAIVFSNGTVLWIPPAVLKVLCVSQDDVDSCHFQFGSWVYSVDEVDIHFMDDKAEVLLDFYQDSLEILENSAQRQEVVYPCCESAYVEMKYLLALRSE 213
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 5)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4AFG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4AFG)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E   (I6L8L2_CAPTE | I6L8L2)
molecular function
    GO:0005230    extracellular ligand-gated ion channel activity    Enables the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts.
biological process
    GO:0034220    ion transmembrane transport    A process in which an ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        I6L8L2_CAPTE | I6L8L24afh 4b5d

(-) Related Entries Specified in the PDB File

4afh CAPITELLA TELETA ACHBP IN COMPLEX WITH LOBELINE