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(-) Description

Title :  CRYSTAL STRUCTURE OF THE AMINO ACID KINASE DOMAIN FROM SACCHAROMYCES CEREVISIAE ACETYLGLUTAMATE KINASE COMPLEXED WITH ITS SUBSTRATE N-ACETYLGLUTAMATE
 
Authors :  S. De Cima, F. Gil-Ortiz, M. Crabeel, I. Fita, V. Rubio
Date :  01 Sep 11  (Deposition) - 02 May 12  (Release) - 09 May 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Transferase, N-Acetyl-L-Glutamate, Arginine Biosynthesis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. De Cima, F. Gil-Ortiz, M. Crabeel, I. Fita, V. Rubio
Insight On An Arginine Synthesis Metabolon From The Tetrameric Structure Of Yeast Acetylglutamate Kinase
Plos One V. 7 34734 2012
PubMed-ID: 22529931  |  Reference-DOI: 10.1371/JOURNAL.PONE.0034734

(-) Compounds

Molecule 1 - ACETYLGLUTAMATE KINASE
    Chains: A, B, C, D
    EC Number: 2.7.2.8
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PYK6-AAK
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PTRC99A
    Fragment: AMINO ACID KINASE DOMAIN, RESIDUES 58-356
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Strain: SIGMA 1278B
    Synonym: N-ACETYLGLUTAMATE KINASE, N-ACETYL-L-GLUTAMATE 5-PHOSPHOTRANSFERASE, NAG KINASE, AGK, PROTEIN ARG5,6,MITOCHONDRIAL

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 36)

Asymmetric/Biological Unit (5, 36)
No.NameCountTypeFull Name
1CL7Ligand/IonCHLORIDE ION
2EDO13Ligand/Ion1,2-ETHANEDIOL
3GOL4Ligand/IonGLYCEROL
4HG8Ligand/IonMERCURY (II) ION
5NLG4Ligand/IonN-ACETYL-L-GLUTAMATE

(-) Sites  (36, 36)

Asymmetric Unit (36, 36)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:212 , VAL A:248 , ASN A:249BINDING SITE FOR RESIDUE EDO A1353
02AC2SOFTWAREGLY B:212 , ASN B:249 , VAL B:252BINDING SITE FOR RESIDUE EDO B1352
03AC3SOFTWARESER D:69 , THR D:70 , GLN D:73 , PHE D:122 , HIS D:125 , HOH D:2041BINDING SITE FOR RESIDUE EDO D1353
04AC4SOFTWARELYS A:265 , ILE A:266 , SER A:325 , GLU A:337 , HOH A:2069BINDING SITE FOR RESIDUE EDO A1354
05AC5SOFTWAREASN A:270 , LYS A:309 , HOH A:2014 , HOH A:2086BINDING SITE FOR RESIDUE EDO A1355
06AC6SOFTWAREHOH A:2037 , TYR B:202 , THR B:240 , SER B:242 , GLN B:244BINDING SITE FOR RESIDUE EDO B1353
07AC7SOFTWAREGLN B:86 , LYS B:89 , TYR B:90 , LEU B:264 , HOH B:2015 , HOH B:2021 , HOH B:2128BINDING SITE FOR RESIDUE EDO B1354
08AC8SOFTWAREASP A:111 , ASN A:112 , LEU A:113 , HIS A:114 , GLU A:115 , HOH A:2017 , LYS C:298BINDING SITE FOR RESIDUE EDO A1356
09AC9SOFTWARETHR B:70 , GLN B:73 , ALA B:121 , PHE B:122 , HIS B:125 , HOH B:2045 , HOH B:2129BINDING SITE FOR RESIDUE EDO B1355
10BC1SOFTWAREGLN B:97 , GLN B:98 , PHE B:99 , TYR B:129 , ILE B:226 , HOH B:2052BINDING SITE FOR RESIDUE EDO B1356
11BC2SOFTWAREGLU C:220 , GLU C:223 , ALA C:224 , LYS C:227 , HOH C:2078BINDING SITE FOR RESIDUE EDO C1353
12BC3SOFTWAREASN C:270 , GLU C:271 , LYS C:272 , GOL C:1355BINDING SITE FOR RESIDUE EDO C1354
13BC4SOFTWAREGLY B:156 , GLY B:305BINDING SITE FOR RESIDUE EDO B1357
14BC5SOFTWAREGLY A:156 , GLY A:305BINDING SITE FOR RESIDUE GOL A1357
15BC6SOFTWARELYS B:103 , ASN B:270 , LYS B:309 , HOH B:2030 , HOH B:2031 , HOH B:2105 , HOH B:2107BINDING SITE FOR RESIDUE GOL B1358
16BC7SOFTWARELYS C:103 , ASN C:270 , LYS C:272 , LYS C:309 , EDO C:1354 , HOH C:2005 , HOH C:2006BINDING SITE FOR RESIDUE GOL C1355
17BC8SOFTWARELYS D:103 , ASN D:270 , LYS D:309 , HOH D:2027 , HOH D:2030 , HOH D:2104 , HOH D:2136BINDING SITE FOR RESIDUE GOL D1354
18BC9SOFTWARECYS A:119 , CL A:1362BINDING SITE FOR RESIDUE HG A1358
19CC1SOFTWAREGLU B:115 , CYS B:119 , GLN B:335 , CL B:1364 , HOH B:2009 , HOH B:2044BINDING SITE FOR RESIDUE HG B1359
20CC2SOFTWARECYS C:119BINDING SITE FOR RESIDUE HG C1356
21CC3SOFTWAREGLU D:115 , CYS D:119 , GLN D:335 , CL D:1358 , HOH D:2007 , HOH D:2040BINDING SITE FOR RESIDUE HG D1355
22CC4SOFTWAREVAL A:167 , CYS A:171 , CL A:1361BINDING SITE FOR RESIDUE HG A1359
23CC5SOFTWAREARG B:143 , VAL B:167 , CYS B:171 , CL B:1362 , CL B:1363BINDING SITE FOR RESIDUE HG B1360
24CC6SOFTWAREARG C:143 , VAL C:167 , CYS C:171 , CL C:1359 , HOH C:2024BINDING SITE FOR RESIDUE HG C1357
25CC7SOFTWARETHR B:280 , GLY B:281 , ARG D:143 , VAL D:167 , LYS D:170 , CYS D:171 , HOH D:2056 , HOH D:2070 , HOH D:2071BINDING SITE FOR RESIDUE HG D1356
26CC8SOFTWAREGLY A:135 , THR A:136 , GLY A:137 , ARG A:158 , ASN A:247 , VAL A:248 , ASN A:249 , ALA A:250 , HOH A:2012 , HOH A:2013 , HOH A:2034BINDING SITE FOR RESIDUE NLG A1360
27CC9SOFTWAREGLY B:135 , THR B:136 , GLY B:137 , ARG B:158 , ASN B:247 , VAL B:248 , ASN B:249 , ALA B:250 , HOH B:2029 , HOH B:2030 , HOH B:2061 , HOH B:2064BINDING SITE FOR RESIDUE NLG B1361
28DC1SOFTWAREGLY C:135 , THR C:136 , GLY C:137 , ARG C:158 , ASN C:247 , VAL C:248 , ASN C:249 , ALA C:250 , HOH C:2006 , HOH C:2007 , HOH C:2020BINDING SITE FOR RESIDUE NLG C1358
29DC2SOFTWAREGLY D:135 , THR D:136 , GLY D:137 , ARG D:158 , ASN D:247 , VAL D:248 , ASN D:249 , ALA D:250 , HOH D:2027 , HOH D:2029 , HOH D:2061 , HOH D:2064BINDING SITE FOR RESIDUE NLG D1357
30DC3SOFTWAREARG B:143 , LYS B:170 , CYS B:171 , GLU B:174 , HG B:1360 , CL B:1363BINDING SITE FOR RESIDUE CL B1362
31DC4SOFTWAREHG B:1360 , CL B:1362BINDING SITE FOR RESIDUE CL B1363
32DC5SOFTWAREHG B:1359BINDING SITE FOR RESIDUE CL B1364
33DC6SOFTWAREHG D:1355BINDING SITE FOR RESIDUE CL D1358
34DC7SOFTWAREARG A:143 , LYS A:170 , HG A:1359BINDING SITE FOR RESIDUE CL A1361
35DC8SOFTWARECYS A:119 , GLN A:335 , HG A:1358BINDING SITE FOR RESIDUE CL A1362
36DC9SOFTWAREARG C:143 , CYS C:171 , HG C:1357 , HOH C:2024BINDING SITE FOR RESIDUE CL C1359

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3ZZF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3ZZF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3ZZF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3ZZF)

(-) Exons   (0, 0)

(no "Exon" information available for 3ZZF)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:291
 aligned with ARG56_YEAST | Q01217 from UniProtKB/Swiss-Prot  Length:863

    Alignment length:291
                                    71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351 
          ARG56_YEAST    62 NGFSATRSTVIQLLNNISTKREVEQYLKYFTSVSQQQFAVIKVGGAIISDNLHELASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDYIDGIRITDEHTMAVVRKCFLEQNLKLVTALEQLGVRARPITSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTSLAETASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIINGSTGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIINVQDLQKELFTDSGAGTMIRRGY 352
               SCOP domains d3zzfa_ A: automated matches                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhh...hhhhhhhhhhhhh.......eeeeehhhhhhhhhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhh.....ee..ee..hhhhhhhhhhhhhhhhhhhhhhhhhh...eeee....eeeee.........eeeeee.hhhhhhhhhhh.eeeee..ee.....ee..hhhhhhhhhhhhh...eeeee................eeehhhhhhhhhh....hhhhhhhhhhhhhhhhhh.....eeee...hhhhhhhh.....eeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zzf A  62 NGFSATRSTVIQLLNNISTKREVEQYLKYFTSVSQQQFAVIKVGGAIISDNLHELASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDYIDGIRITDEHTMAVVRKCFLEQNLKLVTALEQLGVRARPITSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTSLAETASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIINGSTGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIINVQDLQKELFTDSGAGTMIRRGY 352
                                    71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351 


Chain B from PDB  Type:PROTEIN  Length:289
 aligned with ARG56_YEAST | Q01217 from UniProtKB/Swiss-Prot  Length:863

    Alignment length:289
                                    72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342         
          ARG56_YEAST    63 GFSATRSTVIQLLNNISTKREVEQYLKYFTSVSQQQFAVIKVGGAIISDNLHELASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDYIDGIRITDEHTMAVVRKCFLEQNLKLVTALEQLGVRARPITSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTSLAETASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIINGSTGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIINVQDLQKELFTDSGAGTMIRRG 351
               SCOP domains d3zzfb_ B: automated matches                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eehhhhhhhhhhhh.hhhhhhhhhhhhh.......eeeeehhhhhhhhhhhhhhhhhhhhhh....eeee.hhhhhhhhhhhh.....ee..ee..hhhhhhhhhhhhhhhhhhhhhhhhhh...eeee....eeeee.........eeeeee.hhhhhhhhhh..eeee...ee.....ee..hhhhhhhhhhhhh...eeeee................eeehhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.....eeee...hhhhhhhh.....eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zzf B  63 GFSATRSTVIQLLNNISTKREVEQYLKYFTSVSQQQFAVIKVGGAIISDNLHELASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDYIDGIRITDEHTMAVVRKCFLEQNLKLVTALEQLGVRARPITSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTSLAETASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIINGSTGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIINVQDLQKELFTDSGAGTMIRRG 351
                                    72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342         


Chain C from PDB  Type:PROTEIN  Length:291
 aligned with ARG56_YEAST | Q01217 from UniProtKB/Swiss-Prot  Length:863

    Alignment length:291
                                    71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351 
          ARG56_YEAST    62 NGFSATRSTVIQLLNNISTKREVEQYLKYFTSVSQQQFAVIKVGGAIISDNLHELASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDYIDGIRITDEHTMAVVRKCFLEQNLKLVTALEQLGVRARPITSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTSLAETASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIINGSTGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIINVQDLQKELFTDSGAGTMIRRGY 352
               SCOP domains d3zzfc_ C: automated matches                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eehhhhhhhhh...hhhhhhhhhhhhh.......eeeeehhhhhhhhhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhh.....ee..ee..hhhhhhhhhhhhhhhhhhhhhhhhhh...eeee....eeeee.........eeeeee.hhhhhhhhhhh.eeee...ee.....ee..hhhhhhhhhhhhh...eeeee......ee....ee..eeehhhhhhhhhh....hhhhhhhhhhhhhhhhhh.....eeee...hhhhhhhhh....eeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zzf C  62 NGFSATRSTVIQLLNNISTKREVEQYLKYFTSVSQQQFAVIKVGGAIISDNLHELASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDYIDGIRITDEHTMAVVRKCFLEQNLKLVTALEQLGVRARPITSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTSLAETASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIINGSTGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIINVQDLQKELFTDSGAGTMIRRGY 352
                                    71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351 


Chain D from PDB  Type:PROTEIN  Length:290
 aligned with ARG56_YEAST | Q01217 from UniProtKB/Swiss-Prot  Length:863

    Alignment length:290
                                    72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352
          ARG56_YEAST    63 GFSATRSTVIQLLNNISTKREVEQYLKYFTSVSQQQFAVIKVGGAIISDNLHELASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDYIDGIRITDEHTMAVVRKCFLEQNLKLVTALEQLGVRARPITSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTSLAETASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIINGSTGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIINVQDLQKELFTDSGAGTMIRRGY 352
               SCOP domains d3zzfd_ D: automated matches                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh.hhhhhhhhhhhhh.......eeeeehhhhhhhhhhhhhhhhhhhhhh....eeee.hhhhhhhhhhhh.....ee..ee..hhhhhhhhhhhhhhhhhhhhhhhhhh...eeee....eeeee.........eeeeee.hhhhhhhhhh..eeee...ee.....ee..hhhhhhhhhhhhh...eeeee................eeehhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.....eeee...hhhhhhhh.....eeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zzf D  63 GFSATRSTVIQLLNNISTKREVEQYLKYFTSVSQQQFAVIKVGGAIISDNLHELASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDYIDGIRITDEHTMAVVRKCFLEQNLKLVTALEQLGVRARPITSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTSLAETASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIINGSTGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIINVQDLQKELFTDSGAGTMIRRGY 352
                                    72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3ZZF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3ZZF)

(-) Gene Ontology  (23, 23)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (ARG56_YEAST | Q01217)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003942    N-acetyl-gamma-glutamyl-phosphate reductase activity    Catalysis of the reaction: N-acetyl-L-glutamate 5-semialdehyde + NADP+ + phosphate = N-acetyl-5-glutamyl phosphate + NADPH + H+.
    GO:0051287    NAD binding    Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
    GO:0004042    acetyl-CoA:L-glutamate N-acetyltransferase activity    Catalysis of the reaction: L-glutamate + acetyl-CoA = N-acetyl-L-glutamate + CoA + H(+).
    GO:0003991    acetylglutamate kinase activity    Catalysis of the reaction: ATP + N-acetyl-L-glutamate = ADP + N-acetyl-L-glutamate-5-phosphate.
    GO:0034618    arginine binding    Interacting selectively and non-covalently with 2-amino-5-(carbamimidamido)pentanoic acid.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016620    oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP.
    GO:0046983    protein dimerization activity    The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0006526    arginine biosynthetic process    The chemical reactions and pathways resulting in the formation of arginine, 2-amino-5-(carbamimidamido)pentanoic acid.
    GO:0008652    cellular amino acid biosynthetic process    The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0006592    ornithine biosynthetic process    The chemical reactions and pathways resulting in the formation of ornithine, an amino acid only rarely found in proteins, but which is important in living organisms as an intermediate in the reactions of the urea cycle and in arginine biosynthesis.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005759    mitochondrial matrix    The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

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  3zzf
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  ARG56_YEAST | Q01217
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ARG56_YEAST | Q01217: 3zzg 3zzh 3zzi 4ab7

(-) Related Entries Specified in the PDB File

3zzg CRYSTAL STRUCTURE OF THE AMINO ACID KINASE DOMAIN FROM SACCHAROMYCES CEREVISIAE ACETYLGLUTAMATE KINASE WITHOUT LIGANDS
3zzh CRYSTAL STRUCTURE OF THE AMINO ACID KINASE DOMAIN FROM SACCHAROMYCES CEREVISIAE ACETYLGLUTAMATE KINASE COMPLEXED IN COMPLEX WITH ITS FEED-BACK INHIBITOR L-ARGININE
3zzi CRYSTAL STRUCTURE OF A TETRAMERIC ACETYLGLUTAMATE KINASE FROM SACCHAROMYCES CEREVISIAE