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(-) Description

Title :  CRYSTAL STRUCTURE OF THE AMINO ACID KINASE DOMAIN FROM SACCHAROMYCES CEREVISIAE ACETYLGLUTAMATE KINASE IN COMPLEX WITH ITS FEED-BACK INHIBITOR L-ARGININE
 
Authors :  S. De Cima, F. Gil-Ortiz, M. Crabeel, I. Fita, V. Rubio
Date :  01 Sep 11  (Deposition) - 02 May 12  (Release) - 09 May 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Transferase, Arginine Biosynthesis (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. De Cima, F. Gil-Ortiz, M. Crabeel, I. Fita, V. Rubio
Insight On An Arginine Synthesis Metabolon From The Tetrameric Structure Of Yeast Acetylglutamate Kinase
Plos One V. 7 34734 2012
PubMed-ID: 22529931  |  Reference-DOI: 10.1371/JOURNAL.PONE.0034734

(-) Compounds

Molecule 1 - ACETYLGLUTAMATE KINASE
    ChainsA, B, C, D
    EC Number2.7.2.8
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPYK6-AAK
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System VectorPTRC99A
    FragmentAMINO ACID KINASE DOMAIN, RESIDUES 58-356
    Organism CommonBAKER'S YEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    Organism Taxid4932
    StrainSIGMA 1278B
    SynonymN-ACETYLGLUTAMATE KINASE, N-ACETYL-L-GLUTAMATE 5-PHOSPHOTRANSFERASE, NAG KINASE, AGK, PROTEIN ARG5,6,MITOCHONDRIAL

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 59)

Asymmetric/Biological Unit (6, 59)
No.NameCountTypeFull Name
1ARG1Mod. Amino AcidARGININE
2CL5Ligand/IonCHLORIDE ION
3EDO45Ligand/Ion1,2-ETHANEDIOL
4GOL1Ligand/IonGLYCEROL; PROPANE-1,2,3-TRIOL
5MLI3Ligand/IonMALONATE ION
6NLG4Ligand/IonN-ACETYL-L-GLUTAMATE

(-) Sites  (59, 59)

Asymmetric Unit (59, 59)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR C:87 , LYS C:265 , SER C:285 , GLU C:337 , LEU C:338 , THR C:340 , ASP C:341 , SER C:342 , GLY C:343 , GLY C:345 , MET C:347 , HOH C:2083BINDING SITE FOR RESIDUE ARG C1362
02AC2SOFTWAREARG A:169 , LEU A:173 , THR A:194 , THR A:235 , LEU A:237 , MET A:245 , SER B:195BINDING SITE FOR RESIDUE EDO A1353
03AC3SOFTWAREASN A:76 , HOH D:2015BINDING SITE FOR RESIDUE EDO A1354
04AC4SOFTWARELYS A:265 , ILE A:266 , VAL A:267 , SER A:325 , GLU A:337 , HOH A:2098BINDING SITE FOR RESIDUE EDO A1355
05AC5SOFTWARETYR A:153 , ASP A:155 , GLY A:156 , TYR A:304BINDING SITE FOR RESIDUE EDO A1356
06AC6SOFTWARETYR A:202 , THR A:240 , SER A:242 , GLN A:244 , HOH A:2092 , HOH A:2094BINDING SITE FOR RESIDUE EDO A1357
07AC7SOFTWAREVAL A:252 , GLU A:256 , ARG A:259 , GLU A:312 , GLU A:315 , LEU A:316BINDING SITE FOR RESIDUE EDO A1358
08AC8SOFTWAREGLY A:273 , LYS A:283 , GLY A:345BINDING SITE FOR RESIDUE CL A1359
09AC9SOFTWAREILE A:157 , GLY A:212 , VAL A:248 , ASN A:249 , VAL A:252 , NLG A:1361BINDING SITE FOR RESIDUE MLI A1360
10BC1SOFTWAREGLY A:135 , THR A:136 , GLY A:137 , ARG A:158 , ASN A:247 , VAL A:248 , ASN A:249 , ALA A:250 , MLI A:1360 , HOH A:2018 , HOH A:2019 , HOH A:2040BINDING SITE FOR RESIDUE NLG A1361
11BC2SOFTWARESER A:110 , ASP A:111 , HOH A:2103 , HOH B:2012BINDING SITE FOR RESIDUE EDO B1351
12BC3SOFTWARESER A:195 , ARG B:169 , PHE B:172 , LEU B:237 , MET B:245BINDING SITE FOR RESIDUE EDO B1352
13BC4SOFTWARESER B:69 , THR B:70 , ALA B:121 , PHE B:122 , HIS B:125 , HOH B:2046BINDING SITE FOR RESIDUE EDO B1353
14BC5SOFTWARELEU A:173 , HOH A:2048 , HOH A:2049 , GLY B:196 , THR B:199 , THR B:218BINDING SITE FOR RESIDUE EDO B1354
15BC6SOFTWAREGLN A:185 , HOH A:2060 , LYS B:227 , ALA B:228 , HOH B:2094 , HOH B:2096BINDING SITE FOR RESIDUE EDO B1355
16BC7SOFTWARELYS A:272 , GLU B:85 , LEU B:88 , ILE C:72 , ASN C:76BINDING SITE FOR RESIDUE EDO B1356
17BC8SOFTWAREGLN A:332 , TYR B:90 , GLU B:262 , PRO B:263 , SER B:324 , HOH B:2026 , HOH B:2134BINDING SITE FOR RESIDUE EDO B1357
18BC9SOFTWAREGLN B:96 , GLN B:97 , GLN B:98 , LYS B:219 , VAL B:260 , PHE B:261 , HOH B:2033BINDING SITE FOR RESIDUE EDO B1358
19CC1SOFTWAREASN B:270 , LYS B:272 , LYS B:309 , EDO B:1364 , HOH B:2109 , HOH B:2142BINDING SITE FOR RESIDUE EDO B1359
20CC2SOFTWAREASP B:161 , GLU B:162 , LYS B:209 , HOH B:2087BINDING SITE FOR RESIDUE EDO B1360
21CC3SOFTWAREGLN B:96 , GLN B:98 , GLU B:223 , ILE B:226 , LYS B:227 , HOH B:2143BINDING SITE FOR RESIDUE EDO B1361
22CC4SOFTWARELYS B:283 , GLN B:332 , ASP B:333 , HOH B:2135 , ASP D:111 , HOH D:2034BINDING SITE FOR RESIDUE EDO B1362
23CC5SOFTWARESER B:285 , GLY B:343 , ALA B:344 , GLY B:345 , MET B:347BINDING SITE FOR RESIDUE EDO B1363
24CC6SOFTWARELYS B:103 , ASP B:251 , LYS B:309 , EDO B:1359 , HOH B:2038 , HOH B:2040 , HOH B:2099 , HOH B:2142BINDING SITE FOR RESIDUE EDO B1364
25CC7SOFTWARELEU B:113 , HIS B:114 , HOH B:2075 , HOH B:2144BINDING SITE FOR RESIDUE EDO B1365
26CC8SOFTWAREASP B:201 , THR B:240 , HOH B:2082 , HOH B:2097 , HOH B:2098BINDING SITE FOR RESIDUE EDO B1366
27CC9SOFTWAREASN B:270 , GLU B:271 , HOH B:2040 , HOH B:2142BINDING SITE FOR RESIDUE CL B1367
28DC1SOFTWAREILE B:157 , GLY B:212 , VAL B:248 , ASN B:249 , HOH B:2090BINDING SITE FOR RESIDUE MLI B1368
29DC2SOFTWAREGLY B:135 , THR B:136 , GLY B:137 , ARG B:158 , ASN B:247 , VAL B:248 , ASN B:249 , ALA B:250 , HOH B:2038 , HOH B:2039 , HOH B:2066 , HOH B:2068BINDING SITE FOR RESIDUE NLG B1369
30DC3SOFTWARESER B:300 , ASP C:152 , TYR C:153 , ALA D:146 , GLN D:147 , GLY D:148BINDING SITE FOR RESIDUE EDO C1351
31DC4SOFTWARELEU C:173 , ASN C:176 , PRO C:192 , HOH C:2049 , PRO D:221 , HOH D:2077BINDING SITE FOR RESIDUE EDO C1352
32DC5SOFTWAREGLY C:105 , ALA C:107 , ASN C:270 , HOH C:2015 , HOH C:2016 , HOH C:2084BINDING SITE FOR RESIDUE EDO C1353
33DC6SOFTWARELYS A:298 , ASP C:111 , ASN C:112 , LEU C:113 , HIS C:114 , GLU C:115 , HOH C:2020BINDING SITE FOR RESIDUE EDO C1354
34DC7SOFTWAREARG B:68 , HOH B:2006 , GLY C:63 , PHE C:64BINDING SITE FOR RESIDUE EDO C1355
35DC8SOFTWARELEU C:144 , ILE C:149 , GLU C:150 , ASP C:161 , THR C:164 , HOH C:2029 , HOH C:2033 , HOH C:2034BINDING SITE FOR RESIDUE EDO C1356
36DC9SOFTWAREARG C:169 , LEU C:173 , LEU C:237 , MET C:245 , HOH C:2048 , SER D:195BINDING SITE FOR RESIDUE EDO C1357
37EC1SOFTWARETHR C:67 , SER C:69 , HIS C:125 , LEU C:186 , HOH C:2004BINDING SITE FOR RESIDUE EDO C1358
38EC2SOFTWAREGLY C:142 , SER C:242 , HOH C:2058 , GLU D:162 , HOH D:2064BINDING SITE FOR RESIDUE GOL C1359
39EC3SOFTWAREASN C:141 , HOH D:2066BINDING SITE FOR RESIDUE CL C1360
40EC4SOFTWAREGLY C:135 , THR C:136 , GLY C:137 , ARG C:158 , ASN C:247 , VAL C:248 , ASN C:249 , ALA C:250 , HOH C:2017 , HOH C:2032 , HOH C:2091BINDING SITE FOR RESIDUE NLG C1361
41EC5SOFTWAREPHE D:64 , SER D:65 , HIS D:125 , HOH D:2001BINDING SITE FOR RESIDUE EDO D1352
42EC6SOFTWARETHR D:70 , ALA D:121 , PHE D:122 , HIS D:125 , HOH D:2006 , HOH D:2044BINDING SITE FOR RESIDUE EDO D1353
43EC7SOFTWAREASP B:111 , GLY D:273 , LYS D:283 , ASN D:330 , GLN D:332 , ASP D:333 , GLY D:345 , HOH D:2105 , HOH D:2127BINDING SITE FOR RESIDUE EDO D1354
44EC8SOFTWAREVAL D:217 , THR D:218 , LYS D:219 , GLU D:220BINDING SITE FOR RESIDUE EDO D1355
45EC9SOFTWAREASN D:77 , SER D:79 , GLU D:83BINDING SITE FOR RESIDUE EDO D1356
46FC1SOFTWAREGLY C:156 , GLY D:148BINDING SITE FOR RESIDUE EDO D1357
47FC2SOFTWARELEU D:144 , ILE D:149 , GLU D:150 , ASP D:152 , ARG D:158 , ILE D:159 , THR D:164BINDING SITE FOR RESIDUE EDO D1358
48FC3SOFTWARELEU D:308 , GLU D:312 , GLU D:315BINDING SITE FOR RESIDUE EDO D1359
49FC4SOFTWARELYS D:283 , SER D:285 , MET D:286 , EDO D:1361BINDING SITE FOR RESIDUE EDO D1360
50FC5SOFTWAREASN D:277 , THR D:280 , GLU D:282 , EDO D:1360BINDING SITE FOR RESIDUE EDO D1361
51FC6SOFTWARESER D:285 , GLY D:343 , ALA D:344 , GLY D:345 , MET D:347 , HOH D:2112 , HOH D:2134BINDING SITE FOR RESIDUE EDO D1362
52FC7SOFTWARELYS C:227 , THR D:181 , GLN D:185 , HOH D:2135 , HOH D:2136BINDING SITE FOR RESIDUE EDO D1363
53FC8SOFTWARELYS D:103 , ASP D:251 , HOH D:2027 , HOH D:2028 , HOH D:2030 , HOH D:2137BINDING SITE FOR RESIDUE EDO D1364
54FC9SOFTWARESER D:95 , GLN D:98 , TYR D:129 , HOH D:2050BINDING SITE FOR RESIDUE EDO D1365
55GC1SOFTWARETHR D:67 , HIS D:125 , HOH D:2002 , HOH D:2004BINDING SITE FOR RESIDUE EDO D1366
56GC2SOFTWAREASN D:270 , GLU D:271 , HOH D:2030 , HOH D:2106 , HOH D:2137BINDING SITE FOR RESIDUE CL D1367
57GC3SOFTWARESER C:195 , ARG D:169 , MET D:245BINDING SITE FOR RESIDUE CL D1368
58GC4SOFTWAREILE D:157 , GLY D:212 , VAL D:248 , ASN D:249 , NLG D:1370 , HOH D:2090 , HOH D:2139BINDING SITE FOR RESIDUE MLI D1369
59GC5SOFTWAREGLY D:135 , THR D:136 , GLY D:137 , ARG D:158 , ASN D:247 , VAL D:248 , ASN D:249 , ALA D:250 , MLI D:1369 , HOH D:2027 , HOH D:2028 , HOH D:2058 , HOH D:2061BINDING SITE FOR RESIDUE NLG D1370

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3ZZH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3ZZH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3ZZH)

(-) PROSITE Motifs  (1, 1)

Asymmetric/Biological Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GNAT_NAGSPS51731 Vertebrate-like NAGS Gcn5-related N-acetyltransferase (GNAT) domain profile.ARG56_YEAST353-505  1C:1362-1362

(-) Exons   (0, 0)

(no "Exon" information available for 3ZZH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:291
 aligned with ARG56_YEAST | Q01217 from UniProtKB/Swiss-Prot  Length:863

    Alignment length:291
                                    71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351 
         ARG56_YEAST     62 NGFSATRSTVIQLLNNISTKREVEQYLKYFTSVSQQQFAVIKVGGAIISDNLHELASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDYIDGIRITDEHTMAVVRKCFLEQNLKLVTALEQLGVRARPITSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTSLAETASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIINGSTGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIINVQDLQKELFTDSGAGTMIRRGY  352
               SCOP domains d3zzha_ A: automated matches                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eehhhhhhhhh...hhhhhhhhhhhhhh......eeeeehhhhhhhhhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhh.....ee..ee..hhhhhhhhhhhhhhhhhhhhhhhhhh...eeee....eeeee.........eeeeee.hhhhhhhhhhh.eeee...ee.....ee..hhhhhhhhhhhhhh..eeeee......ee....ee..eeehhhhhhhhhh....hhhhhhhhhhhhhhhhhh.....eeee...hhhhhhhh.....eeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3zzh A   62 NGFSATRSTVIQLLNNISTKREVEQYLKYFTSVSQQQFAVIKVGGAIISDNLHELASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDYIDGIRITDEHTMAVVRKCFLEQNLKLVTALEQLGVRARPITSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTSLAETASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIINGSTGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIINVQDLQKELFTDSGAGTMIRRGY  352
                                    71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351 

Chain B from PDB  Type:PROTEIN  Length:289
 aligned with ARG56_YEAST | Q01217 from UniProtKB/Swiss-Prot  Length:863

    Alignment length:289
                                    72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342         
         ARG56_YEAST     63 GFSATRSTVIQLLNNISTKREVEQYLKYFTSVSQQQFAVIKVGGAIISDNLHELASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDYIDGIRITDEHTMAVVRKCFLEQNLKLVTALEQLGVRARPITSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTSLAETASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIINGSTGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIINVQDLQKELFTDSGAGTMIRRG  351
               SCOP domains d3zzhb_ B: automated matches                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh.hhhhhhhhhhhhh.......eeeeehhhhhhhhhhhhhhhhhhhhhh....eeee.hhhhhhhhhhhh.....ee..ee..hhhhhhhhhhhhhhhhhhhhhhhhhh...eeee....eeeee.........eeeeee.hhhhhhhhhh..eeee...ee.....ee..hhhhhhhhhhhhhh..eeeee................eeehhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.....eeee...hhhhhhhh.....eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3zzh B   63 GFSATRSTVIQLLNNISTKREVEQYLKYFTSVSQQQFAVIKVGGAIISDNLHELASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDYIDGIRITDEHTMAVVRKCFLEQNLKLVTALEQLGVRARPITSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTSLAETASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIINGSTGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIINVQDLQKELFTDSGAGTMIRRG  351
                                    72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342         

Chain C from PDB  Type:PROTEIN  Length:289
 aligned with ARG56_YEAST | Q01217 from UniProtKB/Swiss-Prot  Length:863

    Alignment length:295
                                    72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352     
         ARG56_YEAST     63 GFSATRSTVIQLLNNISTKREVEQYLKYFTSVSQQQFAVIKVGGAIISDNLHELASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDYIDGIRITDEHTMAVVRKCFLEQNLKLVTALEQLGVRARPITSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTSLAETASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIINGSTGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIINVQDLQKELFTDSGAGTMIRRGYKLVKR  357
               SCOP domains d3zzhc_ C: automated matches                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhh....hhhhhhhhhhhhhhh.....eeeeehhhhhhhhhhhhhhhhhhhhhh....eeee.hhhhhhhhhhhh.....ee..ee..hhhhhhhhhhhhhhhhhhhhhhhhhh...eeee....eeeee.........eeeeee.hhhhhhhhhhh.eeeee..ee.....ee..hhhhhhhhhhhhhh..eeeeee...............eeehhhhhhhhhhh...hhhhhhhhhhhhhhhhhh....eeeeee..hhhhhhhh.....eeee.------. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GNAT_ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3zzh C   63 GFSATRSTVIQLLNNISTKREVEQYLKYFTSVSQQQFAVIKVGGAIISDNLHELASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDYIDGIRITDEHTMAVVRKCFLEQNLKLVTALEQLGVRARPITSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTSLAETASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIINGSTGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIINVQDLQKELFTDSGAGTMIRR------R 1362
                                    72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       | -    |
                                                                                                                                                                                                                                                                                                                         350   1362

Chain D from PDB  Type:PROTEIN  Length:289
 aligned with ARG56_YEAST | Q01217 from UniProtKB/Swiss-Prot  Length:863

    Alignment length:289
                                    72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342         
         ARG56_YEAST     63 GFSATRSTVIQLLNNISTKREVEQYLKYFTSVSQQQFAVIKVGGAIISDNLHELASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDYIDGIRITDEHTMAVVRKCFLEQNLKLVTALEQLGVRARPITSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTSLAETASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIINGSTGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIINVQDLQKELFTDSGAGTMIRRG  351
               SCOP domains d3zzhd_ D: automated matches                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eehhhhhhhhhh...hhhhhhhhhhhhh.......eeeeehhhhhhhhhhhhhhhhhhhhhh....eeee.hhhhhhhhhhhh.....ee..ee..hhhhhhhhhhhhhhhhhhhhhhhhhh...eeee....eeeee.........eeeeee.hhhhhhhhhh..eeee...ee.....ee..hhhhhhhhhhhhhh..eeeee................eeehhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.....eeee...hhhhhhhh.....eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3zzh D   63 GFSATRSTVIQLLNNISTKREVEQYLKYFTSVSQQQFAVIKVGGAIISDNLHELASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDYIDGIRITDEHTMAVVRKCFLEQNLKLVTALEQLGVRARPITSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTSLAETASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIINGSTGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIINVQDLQKELFTDSGAGTMIRRG  351
                                    72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342         

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3ZZH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3ZZH)

(-) Gene Ontology  (23, 23)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (ARG56_YEAST | Q01217)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003942    N-acetyl-gamma-glutamyl-phosphate reductase activity    Catalysis of the reaction: N-acetyl-L-glutamate 5-semialdehyde + NADP+ + phosphate = N-acetyl-5-glutamyl phosphate + NADPH + H+.
    GO:0051287    NAD binding    Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
    GO:0004042    acetyl-CoA:L-glutamate N-acetyltransferase activity    Catalysis of the reaction: L-glutamate + acetyl-CoA = N-acetyl-L-glutamate + CoA + H(+).
    GO:0003991    acetylglutamate kinase activity    Catalysis of the reaction: ATP + N-acetyl-L-glutamate = ADP + N-acetyl-L-glutamate-5-phosphate.
    GO:0034618    arginine binding    Interacting selectively and non-covalently with 2-amino-5-(carbamimidamido)pentanoic acid.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016620    oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP.
    GO:0046983    protein dimerization activity    The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0006526    arginine biosynthetic process    The chemical reactions and pathways resulting in the formation of arginine, 2-amino-5-(carbamimidamido)pentanoic acid.
    GO:0008652    cellular amino acid biosynthetic process    The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0006592    ornithine biosynthetic process    The chemical reactions and pathways resulting in the formation of ornithine, an amino acid only rarely found in proteins, but which is important in living organisms as an intermediate in the reactions of the urea cycle and in arginine biosynthesis.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005759    mitochondrial matrix    The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ARG56_YEAST | Q012173zzf 3zzg 3zzi 4ab7

(-) Related Entries Specified in the PDB File

3zzf CRYSTAL STRUCTURE OF THE AMINO ACID KINASE DOMAIN FROM SACCHAROMYCES CEREVISIAE ACETYLGLUTAMATE KINASE COMPLEXED WITH ITS SUBSTRATE N-ACETYLGLUTAMATE
3zzg CRYSTAL STRUCTURE OF THE AMINO ACID KINASE DOMAIN FROM SACCHAROMYCES CEREVISIAE ACETYLGLUTAMATE KINASE WITHOUT LIGANDS
3zzi CRYSTAL STRUCTURE OF A TETRAMERIC ACETYLGLUTAMATE KINASE FROM SACCHAROMYCES CEREVISIAE
4ab7 CRYSTAL STRUCTURE OF A TETRAMERIC ACETYLGLUTAMATE KINASE FROM SACCHAROMYCES CEREVISIAE COMPLEXED WITH ITS SUBSTRATE N-ACETYLGLUTAMATE