3ZUO - JenaLib

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Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   OMCI IN COMPLEX WITH LEUKOTRIENE B4

Authors :   P. Roversi, I. Maillet, D. Togbe, I. Couillin, V. F. J. Quesniaux, M. Tei N. Ahmat, O. Lissina, W. Boland, K. Ploss, J. J. E. Caesar, S. Leonharts B. Ryffel, S. M. Lea, M. A. Nunn

Date :   19 Jul 11 (Deposition) - 01 Aug 12 (Release) - 17 Jul 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.86

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. Roversi, B. Ryffel, D. Togbe, I. Maillet, M. Teixeira, N. Ahmat, G. C. Paesen, O. Lissina, W. Boland, K. Ploss, J. J. Caesar, S. Leonhartsberger, S. M. Lea, M. A. Nunn
Bifunctional Lipocalin Ameliorates Murine Immune Complex- Induced Acute Lung Injury.
J. Biol. Chem. V. 288 18789 2013
PubMed-ID: 23625922 | Reference-DOI: 10.1074/JBC.M112.420331
(for further references see the PDB file header)

Molecule 1 - COMPLEMENT INHIBITOR
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	K-12
	Expression System Taxid	:	83333
	Expression System Variant	:	WCM105
	Organ	:	SALIVARY GLAND
	Organism Scientific	:	ORNITHODOROS MOUBATA
	Organism Taxid	:	6938
	Secretion	:	SALIVA
	Synonym	:	OMCI

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 4)

No.	Name	Count	Type	Full Name
1	LTB	4	Ligand/Ion	LEUKOTRIENE B4

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	LTB	1	Ligand/Ion	LEUKOTRIENE B4

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	LTB	1	Ligand/Ion	LEUKOTRIENE B4

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	LTB	1	Ligand/Ion	LEUKOTRIENE B4

Biological Unit 4 (1, 1)

No.	Name	Count	Type	Full Name
1	LTB	1	Ligand/Ion	LEUKOTRIENE B4

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PHE A:36 , GLY A:39 , ARG A:54 , GLY A:59 , GLU A:60 , PRO A:61 , VAL A:72 , MET A:74 , THR A:85 , TRP A:87 , PHE A:89 , GLN A:105 , ARG A:107 , HIS A:119 , ASP A:121 , TRP A:133 , HOH A:2036 , HOH A:2067 , HOH A:2071	BINDING SITE FOR RESIDUE LTB A1170
2	AC2	SOFTWARE	PHE B:36 , GLU B:41 , TYR B:43 , ARG B:54 , GLY B:59 , PRO B:61 , MET B:74 , THR B:85 , TRP B:87 , PHE B:89 , ALA B:98 , GLN B:105 , ARG B:107 , HIS B:119 , ASP B:121 , TRP B:133 , HOH B:2018 , HOH B:2044	BINDING SITE FOR RESIDUE LTB B1170
3	AC3	SOFTWARE	PHE C:36 , ARG C:54 , LEU C:57 , GLY C:59 , GLU C:60 , PRO C:61 , LEU C:70 , MET C:74 , PHE C:76 , THR C:85 , TRP C:87 , PHE C:89 , GLN C:105 , ARG C:107 , HIS C:119 , ASP C:121 , TRP C:133 , HOH C:2027 , HOH C:2043 , HOH C:2046	BINDING SITE FOR RESIDUE LTB C1170
4	AC4	SOFTWARE	PHE D:36 , ARG D:54 , LEU D:57 , GLY D:59 , PRO D:61 , MET D:74 , PHE D:76 , THR D:85 , TRP D:87 , PHE D:89 , GLN D:105 , ARG D:107 , HIS D:119 , ASP D:121 , TRP D:133	BINDING SITE FOR RESIDUE LTB D1170

Asymmetric Unit

No.	Residues
1	A:24	-	A:146
2	A:56	-	A:168
3	A:118	-	A:147
4	B:24	-	B:146
5	B:56	-	B:168
6	B:118	-	B:147
7	C:24	-	C:146
8	C:56	-	C:168
9	C:118	-	C:147
10	D:24	-	D:146
11	D:56	-	D:168
12	D:118	-	D:147

Asymmetric Unit

No.	Residues
1	Glu A:28	-	Pro A:29
2	Asn A:78	-	Gly A:79
3	Glu B:28	-	Pro B:29
4	Asn B:78	-	Gly B:79
5	Glu C:28	-	Pro C:29
6	Ala C:62	-	Gly C:63
7	Asn C:78	-	Gly C:79
8	Glu D:28	-	Pro D:29
9	Asn D:78	-	Gly D:79

(no "SAP(SNP)/Variant" information available for 3ZUO)

(no "PROSITE Motif" information available for 3ZUO)

(no "Exon" information available for 3ZUO)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:142
 aligned with Q5YD59_ORNMO | Q5YD59 from UniProtKB/TrEMBL  Length:168

    Alignment length:146
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162      
         Q5YD59_ORNMO    23 DCTGSEPVDAFQAFSEGKEAYVLVRSTDPKARDCLKGEPAGEKQDNTLPVMMTFKNGTDWASTDWTFTLDGAKVTATLGNLTQNREVVYDSQSHHCHVDKVEKEVPDYEMWMLDAGGLEVEVECCRQKLEELASGRNQMYPHLKDC 168
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhh..eeeeee......eeeeeee...----.eeeeeeee....eeeeeeeeeee..eeeeee..eeeeeeeeee.....eeeeeee....eeeeeee....hhhhhhhhhhhhhhhhh.....hhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zuo A  23 DCTGSEPVDAFQAFSEGKEAYVLVRSTDPKARDCLKGEPAGE----TLPVMMTFKNGTDWASTDWTFTLDGAKVTATLGNLTQNREVVYDSQSHHCHVDKVEKEVPDYEMWMLDAGGLEVEVECCRQKLEELASGRNQMYPHLKDC 168
                                    32        42        52        62 |    | 72        82        92       102       112       122       132       142       152       162      
                                                                    64   69

Chain B from PDB  Type:PROTEIN  Length:145
 aligned with Q5YD59_ORNMO | Q5YD59 from UniProtKB/TrEMBL  Length:168

    Alignment length:145
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163     
         Q5YD59_ORNMO    24 CTGSEPVDAFQAFSEGKEAYVLVRSTDPKARDCLKGEPAGEKQDNTLPVMMTFKNGTDWASTDWTFTLDGAKVTATLGNLTQNREVVYDSQSHHCHVDKVEKEVPDYEMWMLDAGGLEVEVECCRQKLEELASGRNQMYPHLKDC 168
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhh..eeeeee......eeeeeee.......eeeeeeeee....eeeeeeeeeee..eeeeee..eeeeeeeeee.....eeeeeee....eeeeeee....hhhhhhhhhhhhhhhh......hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zuo B  24 CTGSEPVDAFQAFSEGKEAYVLVRSTDPKARDCLKGEPAGEKQDNTLPVMMTFKNGTDWASTDWTFTLDGAKVTATLGNLTQNREVVYDSQSHHCHVDKVEKEVPDYEMWMLDAGGLEVEVECCRQKLEELASGRNQMYPHLKDC 168
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163

Chain C from PDB  Type:PROTEIN  Length:146
 aligned with Q5YD59_ORNMO | Q5YD59 from UniProtKB/TrEMBL  Length:168

    Alignment length:146
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162      
         Q5YD59_ORNMO    23 DCTGSEPVDAFQAFSEGKEAYVLVRSTDPKARDCLKGEPAGEKQDNTLPVMMTFKNGTDWASTDWTFTLDGAKVTATLGNLTQNREVVYDSQSHHCHVDKVEKEVPDYEMWMLDAGGLEVEVECCRQKLEELASGRNQMYPHLKDC 168
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhh..eeeeee......eeeeeee.......eeeeeeeee....eeeeeeeeeee..eeeeee..eeeeeeeeee.....eeeeeee....eeeeeee....hhhhhhhhhhhhhhhhh.....hhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zuo C  23 DCTGSEPVDAFQAFSEGKEAYVLVRSTDPKARDCLKGEPAGEKQDNTLPVMMTFKNGTDWASTDWTFTLDGAKVTATLGNLTQNREVVYDSQSHHCHVDKVEKEVPDYEMWMLDAGGLEVEVECCRQKLEELASGRNQMYPHLKDC 168
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162

Chain D from PDB  Type:PROTEIN  Length:146
 aligned with Q5YD59_ORNMO | Q5YD59 from UniProtKB/TrEMBL  Length:168

    Alignment length:146
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162      
         Q5YD59_ORNMO    23 DCTGSEPVDAFQAFSEGKEAYVLVRSTDPKARDCLKGEPAGEKQDNTLPVMMTFKNGTDWASTDWTFTLDGAKVTATLGNLTQNREVVYDSQSHHCHVDKVEKEVPDYEMWMLDAGGLEVEVECCRQKLEELASGRNQMYPHLKDC 168
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhh..eeeeee......eeeeeee.......eeeeeeeee....eeeeeeeeeee..eeeeee..eeeeeeeeee.....eeeeeee....eeeeeee....hhhhhhhhhhhhhhhh......hhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zuo D  23 DCTGSEPVDAFQAFSEGKEAYVLVRSTDPKARDCLKGEPAGEKQDNTLPVMMTFKNGTDWASTDWTFTLDGAKVTATLGNLTQNREVVYDSQSHHCHVDKVEKEVPDYEMWMLDAGGLEVEVECCRQKLEELASGRNQMYPHLKDC 168
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3ZUO)

(no "CATH Domain" information available for 3ZUO)

(no "Pfam Domain" information available for 3ZUO)

Asymmetric Unit(hide GO term definitions)

(no "Gene Ontology" information available for 3ZUO)

Asymmetric Unit
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	Cis Peptide Bonds
		Ala C:62 - Gly C:63	[ RasMol ]
		Asn A:78 - Gly A:79	[ RasMol ]
		Asn B:78 - Gly B:79	[ RasMol ]
		Asn C:78 - Gly C:79	[ RasMol ]
		Asn D:78 - Gly D:79	[ RasMol ]
		Glu A:28 - Pro A:29	[ RasMol ]
		Glu B:28 - Pro B:29	[ RasMol ]
		Glu C:28 - Pro C:29	[ RasMol ]
		Glu D:28 - Pro D:29	[ RasMol ]

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		Biological Unit 4	[ Jena3D ]

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	3zuo
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	Q5YD59_ORNMO \| Q5YD59	:	2cm4 2cm9 3zui 5hcc 5hcd 5hce

2cm4	THE COMPLEMENT INHIBITOR OMCI IN COMPLEX WITH RICINOLEIC ACID
2cm9	THE COMPLEMENT INHIBITOR OMCI IN COMPLEX WITH RICINOLEIC ACID
3zui	OMCI IN COMPLEX WITH PALMITOLEIC ACID

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 4)

Sites (4, 4)

SS Bonds (12, 12)

Cis Peptide Bonds (9, 9)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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