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(-) Description

Title :  OMCI IN COMPLEX WITH PALMITOLEIC ACID
 
Authors :  P. Roversi, I. Maillet, D. Togbe, I. Couillin, V. F. J. Quesniaux, M. Tei N. Ahmat, O. Lissina, W. Boland, K. Ploss, J. J. E. Caesar, S. Leonharts B. Ryffel, S. M. Lea, M. A. Nunn
Date :  19 Jul 11  (Deposition) - 01 Aug 12  (Release) - 17 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.71
Chains :  Asym./Biol. Unit :  A
Keywords :  Immune System, Soft Tick, Argasid Tick, C5, Lipocalin Complement (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Roversi, B. Ryffel, D. Togbe, I. Maillet, M. Teixeira, N. Ahmat, G. C. Paesen, O. Lissina, W. Boland, K. Ploss, J. J. Caesar, S. Leonhartsberger, S. M. Lea, M. A. Nunn
Bifunctional Lipocalin Ameliorates Murine Immune Complex- Induced Acute Lung Injury.
J. Biol. Chem. V. 288 18789 2013
PubMed-ID: 23625922  |  Reference-DOI: 10.1074/JBC.M112.420331
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - COMPLEMENT INHIBITOR
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: K-12
    Expression System Taxid: 83333
    Expression System Variant: WCM105
    Organism Scientific: ORNITHODOROS MOUBATA
    Organism Taxid: 6938
    Synonym: OMCI
    Tissue: SALIVARY GLAND

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1PAM1Ligand/IonPALMITOLEIC ACID

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:28 , PRO A:29 , ARG A:54 , THR A:85 , TRP A:87 , PHE A:89 , GLN A:105 , ARG A:107 , HOH A:2051 , HOH A:2107BINDING SITE FOR RESIDUE PAM A1169

(-) SS Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1A:24 -A:146
2A:56 -A:168
3A:118 -A:147

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Asp A:23 -Cys A:24
2Glu A:28 -Pro A:29

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3ZUI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3ZUI)

(-) Exons   (0, 0)

(no "Exon" information available for 3ZUI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:146
 aligned with Q5YD59_ORNMO | Q5YD59 from UniProtKB/TrEMBL  Length:168

    Alignment length:146
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162      
         Q5YD59_ORNMO    23 DCTGSEPVDAFQAFSEGKEAYVLVRSTDPKARDCLKGEPAGEKQDNTLPVMMTFKNGTDWASTDWTFTLDGAKVTATLGNLTQNREVVYDSQSHHCHVDKVEKEVPDYEMWMLDAGGLEVEVECCRQKLEELASGRNQMYPHLKDC 168
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhh..eeeeee.........eeee.......eeeeeeeeee..eeeeeeeeeeee..eeeeee..eeeeeeeeee.....eeeeeee....eeeeeee....hhhhhhhhhhhhhhhhh.....hhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zui A  23 DCTGSEPVDAFQAFSEGKEAYVLVRSTDPKARDCLKGEPAGEKQDNTLPVMMTFKNGTDWASTDWTFTLDGAKVTATLGNLTQNREVVYDSQSHHCHVDKVEKEVPDYEMWMLDAGGLEVEVECCRQKLEELASGRNQMYPHLKDC 168
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3ZUI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3ZUI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3ZUI)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q5YD59_ORNMO | Q5YD59: 2cm4 2cm9 3zuo 5hcc 5hcd 5hce

(-) Related Entries Specified in the PDB File

2cm4 THE COMPLEMENT INHIBITOR OMCI IN COMPLEX WITH RICINOLEIC ACID
2cm9 THE COMPLEMENT INHIBITOR OMCI IN COMPLEX WITH RICINOLEIC ACID
3zuo OMCI IN COMPLEX WITH LEUKOTRIENE B4