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(-) Description

Title :  ANOPHELES FUNESTUS GLUTATHIONE-S-TRANSFERASE EPSILON 2 (GSTE2) PROTEIN STRUCTURE FROM DIFFERENT ALELLES: A SINGLE AMINO ACID CHANGE CONFERS HIGH LEVEL OF DDT RESISTANCE AND CROSS RESISTANCE TO PERMETHRIN IN A MAJOR MALARIA VECTOR IN AFRICA
 
Authors :  C. Yunta, A. Albert
Date :  11 Feb 13  (Deposition) - 22 Jan 14  (Release) - 12 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.01
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Transferase, Benin Allele (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. M. Riveron, C. Yunta, S. S. Ibrahim, R. Djouaka, H. Irving, B. D. Menze, H. M. Ismail, J. Hemingway, H. Ranson, A. Albert, C. S. Wondji
A Single Mutation In The Gste2 Gene Allows Tracking Of Metabolically-Based Insecticide Resistance In A Major Malaria Vector.
Genome Biol. V. 15 R27 2014
PubMed-ID: 24565444  |  Reference-DOI: 10.1186/GB-2014-15-2-R27

(-) Compounds

Molecule 1 - GLUTATHIONE S-TRANSFERASE E2
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Organism Scientific: ANOPHELES FUNESTUS
    Organism Taxid: 62324
    Synonym: GLUTATHIONE-S-TRANSFERASE EPSILON 2, GSTE2

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1GSH2Ligand/IonGLUTATHIONE
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1GSH-1Ligand/IonGLUTATHIONE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1GSH2Ligand/IonGLUTATHIONE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER B:12 , PRO B:14 , LEU B:36 , THR B:54 , ILE B:55 , GLU B:67 , SER B:68 , HIS B:69 , ARG B:112BINDING SITE FOR RESIDUE GSH B1221
2AC2SOFTWARESER D:12 , PRO D:14 , THR D:54 , ILE D:55 , PRO D:56 , GLU D:67 , SER D:68 , ARG D:112 , HOH D:2020 , HOH D:2039 , HOH D:2074 , HOH D:2075 , HOH D:2076BINDING SITE FOR RESIDUE GSH D1222

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3ZMK)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Ile A:55 -Pro A:56
2Ile B:55 -Pro B:56
3Ile C:55 -Pro C:56
4Ile D:55 -Pro D:56

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3ZMK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3ZMK)

(-) Exons   (0, 0)

(no "Exon" information available for 3ZMK)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:200
 aligned with G0XSZ1_ANOFN | G0XSZ1 from UniProtKB/TrEMBL  Length:221

    Alignment length:219
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212         
         G0XSZ1_ANOFN     3 KLVLYTLHLSPPCRAVELTAKALGLELEQKNINLLAGDHLTPEFMKLNPQHTIPVLDDDGTIITESHAIMIYLVTKYGKDDTLYPKDPVQQARVNAALHFESGVLFARMRFIFERIFFYGKSDIPEDRVEYVQKSYRLLEDTLKDDFVAGSNMTIADFSCISTISSIMGVVPLEQSEHPRIYEWIDRLKQLPYYEEANGGGGTDLGKFVLAKKEENAKA 221
               SCOP domains d3zmka1 A:3-86 automated matches                                                    d3zmka2 A:87-221 automated matches                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhh...eeeee.-------------------...eeee..eeeehhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhh.........hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zmk A   3 KLVLYTLHLSPPCRAVELTAKALGLELEQKNI-------------------TIPVLDDDGTIITESHAIMIYLVTKYGKDDTLYPKDPVQQARVNAALHFESGVLFARMRFIFERIFFYGKSDIPEDRVEYVQKSYRLLEDTLKDDFVAGSKMTIADFSCISTISSIMGVVPLEQSEHPRIYEWIDRLKQLPYYEEANGGGGTDLGKFVLAKKEENAKA 221
                                    12        22        32 |       -         - |      62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212         
                                                          34                  54                                                                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:222
 aligned with G0XSZ1_ANOFN | G0XSZ1 from UniProtKB/TrEMBL  Length:221

    Alignment length:222
                              1                                                                                                                                                                                                                           
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218  
         G0XSZ1_ANOFN     - --MTKLVLYTLHLSPPCRAVELTAKALGLELEQKNINLLAGDHLTPEFMKLNPQHTIPVLDDDGTIITESHAIMIYLVTKYGKDDTLYPKDPVQQARVNAALHFESGVLFARMRFIFERIFFYGKSDIPEDRVEYVQKSYRLLEDTLKDDFVAGSNMTIADFSCISTISSIMGVVPLEQSEHPRIYEWIDRLKQLPYYEEANGGGGTDLGKFVLAKKEENAK 220
               SCOP domains d3zmkb1 B:-1-86 automated matches                                                       d3zmkb2 B:87-220 automated matches                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeee...hhhhhhhhhhhhhhh...eeee.....hhhhhhhhhhhh......eeee..eeeehhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhh.........hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3zmk B  -1 SHMTKLVLYTLHLSPPCRAVELTAKALGLELEQKNINLLAGDHLTPEFMKLNPQHTIPVLDDDGTIITESHAIMIYLVTKYGKDDTLYPKDPVQQARVNAALHFESGVLFARMRFIFERIFFYGKSDIPEDRVEYVQKSYRLLEDTLKDDFVAGSKMTIADFSCISTISSIMGVVPLEQSEHPRIYEWIDRLKQLPYYEEANGGGGTDLGKFVLAKKEENAK 220
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218  


Chain C from PDB  Type:PROTEIN  Length:199
 aligned with G0XSZ1_ANOFN | G0XSZ1 from UniProtKB/TrEMBL  Length:221

    Alignment length:218
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212        
         G0XSZ1_ANOFN     3 KLVLYTLHLSPPCRAVELTAKALGLELEQKNINLLAGDHLTPEFMKLNPQHTIPVLDDDGTIITESHAIMIYLVTKYGKDDTLYPKDPVQQARVNAALHFESGVLFARMRFIFERIFFYGKSDIPEDRVEYVQKSYRLLEDTLKDDFVAGSNMTIADFSCISTISSIMGVVPLEQSEHPRIYEWIDRLKQLPYYEEANGGGGTDLGKFVLAKKEENAK 220
               SCOP domains d3zmkc1 C:3-86 automated matches                                                    d3zmkc2 C:87-220 automated matches                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....hhhhhhhhhhhhhh...eeee...-------------------..eeee..eeeehhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhh.........hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zmk C   3 KLVLYTLHLSPPCRAVELTAKALGLELEQKNIN-------------------IPVLDDDGTIITESHAIMIYLVTKYGKDDTLYPKDPVQQARVNAALHFESGVLFARMRFIFERIFFYGKSDIPEDRVEYVQKSYRLLEDTLKDDFVAGSKMTIADFSCISTISSIMGVVPLEQSEHPRIYEWIDRLKQLPYYEEANGGGGTDLGKFVLAKKEENAK 220
                                    12        22        32  |      -         -  |     62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212        
                                                           35                  55                                                                                                                                                                     


Chain D from PDB  Type:PROTEIN  Length:221
 aligned with G0XSZ1_ANOFN | G0XSZ1 from UniProtKB/TrEMBL  Length:221

    Alignment length:221
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220 
         G0XSZ1_ANOFN     1 MTKLVLYTLHLSPPCRAVELTAKALGLELEQKNINLLAGDHLTPEFMKLNPQHTIPVLDDDGTIITESHAIMIYLVTKYGKDDTLYPKDPVQQARVNAALHFESGVLFARMRFIFERIFFYGKSDIPEDRVEYVQKSYRLLEDTLKDDFVAGSNMTIADFSCISTISSIMGVVPLEQSEHPRIYEWIDRLKQLPYYEEANGGGGTDLGKFVLAKKEENAKA 221
               SCOP domains d3zmkd1 D:1-86 automated matches                                                      d3zmkd2 D:87-221 automated matches                                                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...hhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhh......eeee..eeeehhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhh.........hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zmk D   1 MTKLVLYTLHLSPPCRAVELTAKALGLELEQKNINLLAGDHLTPEFMKLNPQHTIPVLDDDGTIITESHAIMIYLVTKYGKDDTLYPKDPVQQARVNAALHFESGVLFARMRFIFERIFFYGKSDIPEDRVEYVQKSYRLLEDTLKDDFVAGSKMTIADFSCISTISSIMGVVPLEQSEHPRIYEWIDRLKQLPYYEEANGGGGTDLGKFVLAKKEENAKA 221
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3ZMK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3ZMK)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (G0XSZ1_ANOFN | G0XSZ1)
molecular function
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

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  3zmk
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        G0XSZ1_ANOFN | G0XSZ1: 3zml

(-) Related Entries Specified in the PDB File

3zml ANOPHELES FUNESTUS GLUTATHIONE-S-TRANSFERASE EPSILON 2 (GSTE2) PROTEIN STRUCTURE FROM DIFFERENT ALELLES: A SINGLE AMINO ACID CHANGE CONFERS HIGH LEVEL OF DDT RESISTANCE AND CROSS RESISTANCE TO PERMETHRIN IN A MAJOR MALARIA VECTOR IN AFRICA