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(-) Description

Title :  FITTING RESULTS IN THE I-LAYER OF THE SUBNANOMETER STRUCTURE OF THE BACTERIAL PKM101 TYPE IV SECRETION SYSTEM CORE COMPLEX DIGESTED WITH ELASTASE
 
Authors :  A. Rivera-Calzada, R. Fronzes, C. G. Savva, V. Chandran, P. W. Lian, T. L E. Pardon, J. Steyaert, H. Remaut, G. Waksman, E. V. Orlova
Date :  10 Nov 12  (Deposition) - 03 Apr 13  (Release) - 01 May 13  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  8.50
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N
Keywords :  Cell Adhesion, Bacterial Secretion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Rivera-Calzada, R. Fronzes, C. G. Savva, V. Chandran, P. W. Lian, T. Laeremans, E. Pardon, J. Steyaert, H. Remaut, G. Waksman, E. V. Orlova
Structure Of A Bacterial Type Iv Secretion Core Complex At Subnanometre Resolution.
Embo J. V. 32 1195 2013
PubMed-ID: 23511972  |  Reference-DOI: 10.1038/EMBOJ.2013.58

(-) Compounds

Molecule 1 - TRAO PROTEIN
    Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PASK-IBA3C
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: N-TERMINAL DOMAIN, RESIDUES 24-135
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 511693
    Plasmid: PKM101
    Strain: BL21

 Structural Features

(-) Chains, Units

  1234567891011121314
Asymmetric/Biological Unit : ABCDEFGHIJKLMN

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3ZBJ)

(-) Sites  (0, 0)

(no "Site" information available for 3ZBJ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3ZBJ)

(-) Cis Peptide Bonds  (42, 42)

Asymmetric/Biological Unit
No.Residues
1Tyr A:9 -Asp A:10
2Ala A:39 -Pro A:40
3Tyr A:44 -Ile A:45
4Tyr B:9 -Asp B:10
5Ala B:39 -Pro B:40
6Tyr B:44 -Ile B:45
7Tyr C:9 -Asp C:10
8Ala C:39 -Pro C:40
9Tyr C:44 -Ile C:45
10Tyr D:9 -Asp D:10
11Ala D:39 -Pro D:40
12Tyr D:44 -Ile D:45
13Tyr E:9 -Asp E:10
14Ala E:39 -Pro E:40
15Tyr E:44 -Ile E:45
16Tyr F:9 -Asp F:10
17Ala F:39 -Pro F:40
18Tyr F:44 -Ile F:45
19Tyr G:9 -Asp G:10
20Ala G:39 -Pro G:40
21Tyr G:44 -Ile G:45
22Tyr H:9 -Asp H:10
23Ala H:39 -Pro H:40
24Tyr H:44 -Ile H:45
25Tyr I:9 -Asp I:10
26Ala I:39 -Pro I:40
27Tyr I:44 -Ile I:45
28Tyr J:9 -Asp J:10
29Ala J:39 -Pro J:40
30Tyr J:44 -Ile J:45
31Tyr K:9 -Asp K:10
32Ala K:39 -Pro K:40
33Tyr K:44 -Ile K:45
34Tyr L:9 -Asp L:10
35Ala L:39 -Pro L:40
36Tyr L:44 -Ile L:45
37Tyr M:9 -Asp M:10
38Ala M:39 -Pro M:40
39Tyr M:44 -Ile M:45
40Tyr N:9 -Asp N:10
41Ala N:39 -Pro N:40
42Tyr N:44 -Ile N:45

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3ZBJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3ZBJ)

(-) Exons   (0, 0)

(no "Exon" information available for 3ZBJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:112
 aligned with Q46704_ECOLX | Q46704 from UniProtKB/TrEMBL  Length:294

    Alignment length:112
                                    33        43        53        63        73        83        93       103       113       123       133  
         Q46704_ECOLX    24 LEVGRNSPYDYRIKSVVYNPVNVVKIDAVAGVATHIVVAPDETYITHAFGDSESRTFAHKMNHFFVKPKQAMSDTNLVIVTDKRTYNIVLHFIGEETKKNADGTVSKSFIET 135
               SCOP domains ---------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................................................................................................................ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 3zbj A   1 LEVGRNSPYDYRIKSVVYNPVNVVKIDAVAGVATHIVVAPDETYITHAFGDSESRTFAHKMNHFFVKPKQAMSDTNLVIVTDKRTYNIVLHFIGEETKKNADGTVSKSFIET 112
                                    10        20        30        40        50        60        70        80        90       100       110  


Chain B from PDB  Type:PROTEIN  Length:112
 aligned with Q46704_ECOLX | Q46704 from UniProtKB/TrEMBL  Length:294

    Alignment length:112
                                    33        43        53        63        73        83        93       103       113       123       133  
         Q46704_ECOLX    24 LEVGRNSPYDYRIKSVVYNPVNVVKIDAVAGVATHIVVAPDETYITHAFGDSESRTFAHKMNHFFVKPKQAMSDTNLVIVTDKRTYNIVLHFIGEETKKNADGTVSKSFIET 135
               SCOP domains ---------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................................................................................................................ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 3zbj B   1 LEVGRNSPYDYRIKSVVYNPVNVVKIDAVAGVATHIVVAPDETYITHAFGDSESRTFAHKMNHFFVKPKQAMSDTNLVIVTDKRTYNIVLHFIGEETKKNADGTVSKSFIET 112
                                    10        20        30        40        50        60        70        80        90       100       110  


Chain C from PDB  Type:PROTEIN  Length:112
 aligned with Q46704_ECOLX | Q46704 from UniProtKB/TrEMBL  Length:294

    Alignment length:112
                                    33        43        53        63        73        83        93       103       113       123       133  
         Q46704_ECOLX    24 LEVGRNSPYDYRIKSVVYNPVNVVKIDAVAGVATHIVVAPDETYITHAFGDSESRTFAHKMNHFFVKPKQAMSDTNLVIVTDKRTYNIVLHFIGEETKKNADGTVSKSFIET 135
               SCOP domains ---------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................................................................................................................ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 3zbj C   1 LEVGRNSPYDYRIKSVVYNPVNVVKIDAVAGVATHIVVAPDETYITHAFGDSESRTFAHKMNHFFVKPKQAMSDTNLVIVTDKRTYNIVLHFIGEETKKNADGTVSKSFIET 112
                                    10        20        30        40        50        60        70        80        90       100       110  


Chain D from PDB  Type:PROTEIN  Length:112
 aligned with Q46704_ECOLX | Q46704 from UniProtKB/TrEMBL  Length:294

    Alignment length:112
                                    33        43        53        63        73        83        93       103       113       123       133  
         Q46704_ECOLX    24 LEVGRNSPYDYRIKSVVYNPVNVVKIDAVAGVATHIVVAPDETYITHAFGDSESRTFAHKMNHFFVKPKQAMSDTNLVIVTDKRTYNIVLHFIGEETKKNADGTVSKSFIET 135
               SCOP domains ---------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................................................................................................................ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 3zbj D   1 LEVGRNSPYDYRIKSVVYNPVNVVKIDAVAGVATHIVVAPDETYITHAFGDSESRTFAHKMNHFFVKPKQAMSDTNLVIVTDKRTYNIVLHFIGEETKKNADGTVSKSFIET 112
                                    10        20        30        40        50        60        70        80        90       100       110  


Chain E from PDB  Type:PROTEIN  Length:112
 aligned with Q46704_ECOLX | Q46704 from UniProtKB/TrEMBL  Length:294

    Alignment length:112
                                    33        43        53        63        73        83        93       103       113       123       133  
         Q46704_ECOLX    24 LEVGRNSPYDYRIKSVVYNPVNVVKIDAVAGVATHIVVAPDETYITHAFGDSESRTFAHKMNHFFVKPKQAMSDTNLVIVTDKRTYNIVLHFIGEETKKNADGTVSKSFIET 135
               SCOP domains ---------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................................................................................................................ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 3zbj E   1 LEVGRNSPYDYRIKSVVYNPVNVVKIDAVAGVATHIVVAPDETYITHAFGDSESRTFAHKMNHFFVKPKQAMSDTNLVIVTDKRTYNIVLHFIGEETKKNADGTVSKSFIET 112
                                    10        20        30        40        50        60        70        80        90       100       110  


Chain F from PDB  Type:PROTEIN  Length:112
 aligned with Q46704_ECOLX | Q46704 from UniProtKB/TrEMBL  Length:294

    Alignment length:112
                                    33        43        53        63        73        83        93       103       113       123       133  
         Q46704_ECOLX    24 LEVGRNSPYDYRIKSVVYNPVNVVKIDAVAGVATHIVVAPDETYITHAFGDSESRTFAHKMNHFFVKPKQAMSDTNLVIVTDKRTYNIVLHFIGEETKKNADGTVSKSFIET 135
               SCOP domains ---------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................................................................................................................ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 3zbj F   1 LEVGRNSPYDYRIKSVVYNPVNVVKIDAVAGVATHIVVAPDETYITHAFGDSESRTFAHKMNHFFVKPKQAMSDTNLVIVTDKRTYNIVLHFIGEETKKNADGTVSKSFIET 112
                                    10        20        30        40        50        60        70        80        90       100       110  


Chain G from PDB  Type:PROTEIN  Length:112
 aligned with Q46704_ECOLX | Q46704 from UniProtKB/TrEMBL  Length:294

    Alignment length:112
                                    33        43        53        63        73        83        93       103       113       123       133  
         Q46704_ECOLX    24 LEVGRNSPYDYRIKSVVYNPVNVVKIDAVAGVATHIVVAPDETYITHAFGDSESRTFAHKMNHFFVKPKQAMSDTNLVIVTDKRTYNIVLHFIGEETKKNADGTVSKSFIET 135
               SCOP domains ---------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................................................................................................................ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 3zbj G   1 LEVGRNSPYDYRIKSVVYNPVNVVKIDAVAGVATHIVVAPDETYITHAFGDSESRTFAHKMNHFFVKPKQAMSDTNLVIVTDKRTYNIVLHFIGEETKKNADGTVSKSFIET 112
                                    10        20        30        40        50        60        70        80        90       100       110  


Chain H from PDB  Type:PROTEIN  Length:112
 aligned with Q46704_ECOLX | Q46704 from UniProtKB/TrEMBL  Length:294

    Alignment length:112
                                    33        43        53        63        73        83        93       103       113       123       133  
         Q46704_ECOLX    24 LEVGRNSPYDYRIKSVVYNPVNVVKIDAVAGVATHIVVAPDETYITHAFGDSESRTFAHKMNHFFVKPKQAMSDTNLVIVTDKRTYNIVLHFIGEETKKNADGTVSKSFIET 135
               SCOP domains ---------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................................................................................................................ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 3zbj H   1 LEVGRNSPYDYRIKSVVYNPVNVVKIDAVAGVATHIVVAPDETYITHAFGDSESRTFAHKMNHFFVKPKQAMSDTNLVIVTDKRTYNIVLHFIGEETKKNADGTVSKSFIET 112
                                    10        20        30        40        50        60        70        80        90       100       110  


Chain I from PDB  Type:PROTEIN  Length:112
 aligned with Q46704_ECOLX | Q46704 from UniProtKB/TrEMBL  Length:294

    Alignment length:112
                                    33        43        53        63        73        83        93       103       113       123       133  
         Q46704_ECOLX    24 LEVGRNSPYDYRIKSVVYNPVNVVKIDAVAGVATHIVVAPDETYITHAFGDSESRTFAHKMNHFFVKPKQAMSDTNLVIVTDKRTYNIVLHFIGEETKKNADGTVSKSFIET 135
               SCOP domains ---------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................................................................................................................ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 3zbj I   1 LEVGRNSPYDYRIKSVVYNPVNVVKIDAVAGVATHIVVAPDETYITHAFGDSESRTFAHKMNHFFVKPKQAMSDTNLVIVTDKRTYNIVLHFIGEETKKNADGTVSKSFIET 112
                                    10        20        30        40        50        60        70        80        90       100       110  


Chain J from PDB  Type:PROTEIN  Length:112
 aligned with Q46704_ECOLX | Q46704 from UniProtKB/TrEMBL  Length:294

    Alignment length:112
                                    33        43        53        63        73        83        93       103       113       123       133  
         Q46704_ECOLX    24 LEVGRNSPYDYRIKSVVYNPVNVVKIDAVAGVATHIVVAPDETYITHAFGDSESRTFAHKMNHFFVKPKQAMSDTNLVIVTDKRTYNIVLHFIGEETKKNADGTVSKSFIET 135
               SCOP domains ---------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................................................................................................................ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 3zbj J   1 LEVGRNSPYDYRIKSVVYNPVNVVKIDAVAGVATHIVVAPDETYITHAFGDSESRTFAHKMNHFFVKPKQAMSDTNLVIVTDKRTYNIVLHFIGEETKKNADGTVSKSFIET 112
                                    10        20        30        40        50        60        70        80        90       100       110  


Chain K from PDB  Type:PROTEIN  Length:112
 aligned with Q46704_ECOLX | Q46704 from UniProtKB/TrEMBL  Length:294

    Alignment length:112
                                    33        43        53        63        73        83        93       103       113       123       133  
         Q46704_ECOLX    24 LEVGRNSPYDYRIKSVVYNPVNVVKIDAVAGVATHIVVAPDETYITHAFGDSESRTFAHKMNHFFVKPKQAMSDTNLVIVTDKRTYNIVLHFIGEETKKNADGTVSKSFIET 135
               SCOP domains ---------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................................................................................................................ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 3zbj K   1 LEVGRNSPYDYRIKSVVYNPVNVVKIDAVAGVATHIVVAPDETYITHAFGDSESRTFAHKMNHFFVKPKQAMSDTNLVIVTDKRTYNIVLHFIGEETKKNADGTVSKSFIET 112
                                    10        20        30        40        50        60        70        80        90       100       110  


Chain L from PDB  Type:PROTEIN  Length:112
 aligned with Q46704_ECOLX | Q46704 from UniProtKB/TrEMBL  Length:294

    Alignment length:112
                                    33        43        53        63        73        83        93       103       113       123       133  
         Q46704_ECOLX    24 LEVGRNSPYDYRIKSVVYNPVNVVKIDAVAGVATHIVVAPDETYITHAFGDSESRTFAHKMNHFFVKPKQAMSDTNLVIVTDKRTYNIVLHFIGEETKKNADGTVSKSFIET 135
               SCOP domains ---------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................................................................................................................ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 3zbj L   1 LEVGRNSPYDYRIKSVVYNPVNVVKIDAVAGVATHIVVAPDETYITHAFGDSESRTFAHKMNHFFVKPKQAMSDTNLVIVTDKRTYNIVLHFIGEETKKNADGTVSKSFIET 112
                                    10        20        30        40        50        60        70        80        90       100       110  


Chain M from PDB  Type:PROTEIN  Length:112
 aligned with Q46704_ECOLX | Q46704 from UniProtKB/TrEMBL  Length:294

    Alignment length:112
                                    33        43        53        63        73        83        93       103       113       123       133  
         Q46704_ECOLX    24 LEVGRNSPYDYRIKSVVYNPVNVVKIDAVAGVATHIVVAPDETYITHAFGDSESRTFAHKMNHFFVKPKQAMSDTNLVIVTDKRTYNIVLHFIGEETKKNADGTVSKSFIET 135
               SCOP domains ---------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................................................................................................................ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 3zbj M   1 LEVGRNSPYDYRIKSVVYNPVNVVKIDAVAGVATHIVVAPDETYITHAFGDSESRTFAHKMNHFFVKPKQAMSDTNLVIVTDKRTYNIVLHFIGEETKKNADGTVSKSFIET 112
                                    10        20        30        40        50        60        70        80        90       100       110  


Chain N from PDB  Type:PROTEIN  Length:112
 aligned with Q46704_ECOLX | Q46704 from UniProtKB/TrEMBL  Length:294

    Alignment length:112
                                    33        43        53        63        73        83        93       103       113       123       133  
         Q46704_ECOLX    24 LEVGRNSPYDYRIKSVVYNPVNVVKIDAVAGVATHIVVAPDETYITHAFGDSESRTFAHKMNHFFVKPKQAMSDTNLVIVTDKRTYNIVLHFIGEETKKNADGTVSKSFIET 135
               SCOP domains ---------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................................................................................................................ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 3zbj N   1 LEVGRNSPYDYRIKSVVYNPVNVVKIDAVAGVATHIVVAPDETYITHAFGDSESRTFAHKMNHFFVKPKQAMSDTNLVIVTDKRTYNIVLHFIGEETKKNADGTVSKSFIET 112
                                    10        20        30        40        50        60        70        80        90       100       110
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3ZBJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3ZBJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3ZBJ)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L,M,N   (Q46704_ECOLX | Q46704)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

 Visualization

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Asymmetric/Biological Unit
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  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 3zbj)
 
  Sites
(no "Sites" information available for 3zbj)
 
  Cis Peptide Bonds
    Ala A:39 - Pro A:40   [ RasMol ]  
    Ala B:39 - Pro B:40   [ RasMol ]  
    Ala C:39 - Pro C:40   [ RasMol ]  
    Ala D:39 - Pro D:40   [ RasMol ]  
    Ala E:39 - Pro E:40   [ RasMol ]  
    Ala F:39 - Pro F:40   [ RasMol ]  
    Ala G:39 - Pro G:40   [ RasMol ]  
    Ala H:39 - Pro H:40   [ RasMol ]  
    Ala I:39 - Pro I:40   [ RasMol ]  
    Ala J:39 - Pro J:40   [ RasMol ]  
    Ala K:39 - Pro K:40   [ RasMol ]  
    Ala L:39 - Pro L:40   [ RasMol ]  
    Ala M:39 - Pro M:40   [ RasMol ]  
    Ala N:39 - Pro N:40   [ RasMol ]  
    Tyr A:44 - Ile A:45   [ RasMol ]  
    Tyr A:9 - Asp A:10   [ RasMol ]  
    Tyr B:44 - Ile B:45   [ RasMol ]  
    Tyr B:9 - Asp B:10   [ RasMol ]  
    Tyr C:44 - Ile C:45   [ RasMol ]  
    Tyr C:9 - Asp C:10   [ RasMol ]  
    Tyr D:44 - Ile D:45   [ RasMol ]  
    Tyr D:9 - Asp D:10   [ RasMol ]  
    Tyr E:44 - Ile E:45   [ RasMol ]  
    Tyr E:9 - Asp E:10   [ RasMol ]  
    Tyr F:44 - Ile F:45   [ RasMol ]  
    Tyr F:9 - Asp F:10   [ RasMol ]  
    Tyr G:44 - Ile G:45   [ RasMol ]  
    Tyr G:9 - Asp G:10   [ RasMol ]  
    Tyr H:44 - Ile H:45   [ RasMol ]  
    Tyr H:9 - Asp H:10   [ RasMol ]  
    Tyr I:44 - Ile I:45   [ RasMol ]  
    Tyr I:9 - Asp I:10   [ RasMol ]  
    Tyr J:44 - Ile J:45   [ RasMol ]  
    Tyr J:9 - Asp J:10   [ RasMol ]  
    Tyr K:44 - Ile K:45   [ RasMol ]  
    Tyr K:9 - Asp K:10   [ RasMol ]  
    Tyr L:44 - Ile L:45   [ RasMol ]  
    Tyr L:9 - Asp L:10   [ RasMol ]  
    Tyr M:44 - Ile M:45   [ RasMol ]  
    Tyr M:9 - Asp M:10   [ RasMol ]  
    Tyr N:44 - Ile N:45   [ RasMol ]  
    Tyr N:9 - Asp N:10   [ RasMol ]  
 

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        Q46704_ECOLX | Q46704: 2ypw 3jqo 3zbi

(-) Related Entries Specified in the PDB File

3zbi FITTING RESULT IN THE O-LAYER OF THE SUBNANOMETER STRUCTURE OF THE BACTERIAL PKM101 TYPE IV SECRETION SYSTEM CORE COMPLEX DIGESTED WITH ELASTASE RELATED ID: EMD-2233 RELATED DB: EMDB SUBNANOMETER STRUCTURE OF THE BACTERIAL PKM101 TYPE IV SECRETION SYSTEM CORE COMPLEX DIGESTED WITH ELASTASE