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(-) Description

Title :  COPPER AMINE OXIDASE FROM ARTHROBACTER GLOBIFORMIS: PRODUCT SCHIFF-BASE FORM PRODUCED BY ANAEROBIC REDUCTION IN THE PRESENCE OF SODIUM CHLORIDE
 
Authors :  T. Okajima, S. Nakanishi, T. Murakawa, M. Kataoka, H. Hayashi, A. Hamag T. Nakai, Y. Kawano, H. Yamaguchi, K. Tanizawa
Date :  10 Mar 15  (Deposition) - 19 Aug 15  (Release) - 19 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  B  (2x)
Keywords :  Copper Amine Oxidase, Topaquinone, Tpq, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Murakawa, A. Hamaguchi, S. Nakanishi, M. Kataoka, T. Nakai, Y. Kawano, H. Yamaguchi, H. Hayashi, K. Tanizawa, T. Okajima
Probing The Catalytic Mechanism Of Copper Amine Oxidase Fro Arthrobacter Globiformis With Halide Ions
J. Biol. Chem. 2015
PubMed: search  |  Reference-DOI: 10.1074/JBC.M115.662726

(-) Compounds

Molecule 1 - PHENYLETHYLAMINE OXIDASE
    Chains: A, B
    EC Number: 1.4.3.21
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PEPO-2
    Expression System Strain: CD03
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 9-628
    Organism Scientific: ARTHROBACTER GLOBIFORMIS
    Organism Taxid: 1665
    Synonym: PRIMARY AMINE OXIDASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): A 
Biological Unit 2 (2x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 18)

Asymmetric Unit (5, 18)
No.NameCountTypeFull Name
12TY2Mod. Amino Acid2-HYDROXY-5-{[(1E)-2-PHENYLETHYLIDENE]AMINO}-L-TYROSINE
2CL5Ligand/IonCHLORIDE ION
3CU2Ligand/IonCOPPER (II) ION
4GOL6Ligand/IonGLYCEROL
5NA3Ligand/IonSODIUM ION
Biological Unit 1 (2, 12)
No.NameCountTypeFull Name
12TY2Mod. Amino Acid2-HYDROXY-5-{[(1E)-2-PHENYLETHYLIDENE]AMINO}-L-TYROSINE
2CL-1Ligand/IonCHLORIDE ION
3CU-1Ligand/IonCOPPER (II) ION
4GOL10Ligand/IonGLYCEROL
5NA-1Ligand/IonSODIUM ION
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
12TY2Mod. Amino Acid2-HYDROXY-5-{[(1E)-2-PHENYLETHYLIDENE]AMINO}-L-TYROSINE
2CL-1Ligand/IonCHLORIDE ION
3CU-1Ligand/IonCOPPER (II) ION
4GOL2Ligand/IonGLYCEROL
5NA-1Ligand/IonSODIUM ION

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:431 , HIS A:433 , HIS A:592 , CL A:702 , HOH A:1370BINDING SITE FOR RESIDUE CU A 701
02AC2SOFTWARE2TY A:382 , HIS A:431 , HIS A:433 , HIS A:592 , MET A:602 , CU A:701 , HOH A:824 , HOH A:1370BINDING SITE FOR RESIDUE CL A 702
03AC3SOFTWAREHIS A:345 , SER A:374 , TYR A:387 , HOH A:1150 , HOH A:1347BINDING SITE FOR RESIDUE CL A 703
04AC4SOFTWAREALA A:93 , ALA A:94 , ARG A:148 , SER A:562 , VAL B:79 , THR B:80BINDING SITE FOR RESIDUE NA A 704
05AC5SOFTWAREARG A:49 , ASP A:440 , MET A:441 , PHE A:446 , ASP A:581 , ILE A:582 , HOH A:831BINDING SITE FOR RESIDUE NA A 705
06AC6SOFTWAREGLU A:347 , ARG A:370 , LYS A:401 , GOL A:710 , HOH A:852 , HOH A:998 , HOH A:1020 , HOH A:1334BINDING SITE FOR RESIDUE GOL A 706
07AC7SOFTWAREHIS A:515 , ASP A:605 , LYS A:610 , HOH A:1243 , HOH A:1266 , HOH A:1340BINDING SITE FOR RESIDUE GOL A 707
08AC8SOFTWAREASP A:161 , HIS A:170 , VAL A:197 , ALA A:199 , HOH B:1265BINDING SITE FOR RESIDUE GOL A 708
09AC9SOFTWAREILE A:39 , ALA A:40 , TYR A:41 , LEU A:42 , VAL A:251 , ILE A:328 , SER A:329 , ASP A:330 , HOH A:912 , HOH A:982BINDING SITE FOR RESIDUE GOL A 709
10BC1SOFTWARETRP A:349 , ARG A:370 , TYR A:389 , GLU A:397 , GLU A:399 , GOL A:706 , HOH A:1334BINDING SITE FOR RESIDUE GOL A 710
11BC2SOFTWAREHIS B:431 , HIS B:433 , HIS B:592 , CL B:702 , HOH B:1319BINDING SITE FOR RESIDUE CU B 701
12BC3SOFTWARE2TY B:382 , HIS B:431 , HIS B:433 , HIS B:592 , MET B:602 , CU B:701 , HOH B:1309 , HOH B:1319BINDING SITE FOR RESIDUE CL B 702
13BC4SOFTWAREHIS B:345 , SER B:374 , TYR B:387 , HOH B:1204BINDING SITE FOR RESIDUE CL B 703
14BC5SOFTWAREASP B:128BINDING SITE FOR RESIDUE CL B 704
15BC6SOFTWAREASP B:440 , MET B:441 , ASP B:581 , ILE B:582 , HOH B:885BINDING SITE FOR RESIDUE NA B 705
16BC7SOFTWAREGLU B:347 , ASP B:348 , TRP B:349 , ARG B:370 , LYS B:401 , HOH B:859 , HOH B:1076BINDING SITE FOR RESIDUE GOL B 706

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:317 -A:343
2B:317 -B:343

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Trp A:599 -Pro A:600
2Trp B:599 -Pro B:600

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3X40)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3X40)

(-) Exons   (0, 0)

(no "Exon" information available for 3X40)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:620
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhh......eeeeeeee..............eeeeeeee......eeeeee....eeeeeee.hhhhhh....hhhhhhhhhhhhh.hhhhhhhhhhhh.hhh.eeeeeee.....hhhhh...eeeeeeee......hhhhh....eeeeee....eeeeeee..............hhhhhh...................eee...eeee..eeeeeeee...eeeeeeeeeee..eeeeeeeeeeeeeeeee...........eee.....hhhhhh.............eee..eee.....eee....eeeeeeeeeeeeeee......eeeeeeeeeeeeeeeee..eeeeeeeeee....eeeeeeeee....ee........eeeee..eeee.eeeeeeeeeee.......eeeeeeeee............eeeeeeee.hhhh.ee..hhhhh.eeeeeeeeee.....eeeeeeee...........hhhhhhhhhhhh.eeeee....................hhhhhhhhh.......eeeeeeeeeee..hhhhh..eeeeeeeeeeeee.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3x40 A   9 ASPFRLASAGEISEVQGILRTAGLLGPEKRIAYLGVLDPARGAGSEAEDRRFRVFIHDVSGARPQEVTVSVTNGTVISAVELDTAATGELPVLEEEFEVVEQLLATDERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPVDGLVAYVDVVSKEVTRVIDTGVFPVPAEHGNYTDPELTGPLRTTQKPISITQPEGPSFTVTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDRLRPIINRASIAEMVVPYGDPSPIRSWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWGILAKHSDLWSGINYTRRNRRMVISFFTTIGNyDYGFYWYLYLDGTIEFEAKATGVVFTSAFPEGGSDNISQLAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVVRQTMGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHNQPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDIDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDVPAN 628
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378   |   388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628
                                                                                                                                                                                                                                                                                                                                                                                                               382-2TY                                                                                                                                                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:620
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhh......eeeeeeee..............eeeeeeee......eeeeee....eeeeeee.hhhhhh....hhhhhhhhhhhhh.hhhhhhhhhhh..hhh.eee..ee.....hhhhh...eeee.eee......hhhhh....eeeeee....eeeeeee..............hhhhhh...................eee...eeee..eeeeeeee...eeeeeeeeeee..eeeeeeeeeeeeeeeee...........eee........................eee..eee.....eee....eeeeeeeeeeeeeee......eeeeeeeeeeeeeeeee..eeeeeeeeee....eeeeeeeee....ee........eeeee..eeee.eeeeeeeeeee.......eeeeeeeee............eeeeeee..hhhh.ee..hhhhh.eeeeeeeeee.....eeeeeeee...........hhhhhhhhhhhh.eeeee....................hhhhhhh.........eeeeeeeeeee..hhhhh..eeeeeeeeeeeee.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3x40 B   9 ASPFRLASAGEISEVQGILRTAGLLGPEKRIAYLGVLDPARGAGSEAEDRRFRVFIHDVSGARPQEVTVSVTNGTVISAVELDTAATGELPVLEEEFEVVEQLLATDERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPVDGLVAYVDVVSKEVTRVIDTGVFPVPAEHGNYTDPELTGPLRTTQKPISITQPEGPSFTVTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDRLRPIINRASIAEMVVPYGDPSPIRSWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWGILAKHSDLWSGINYTRRNRRMVISFFTTIGNyDYGFYWYLYLDGTIEFEAKATGVVFTSAFPEGGSDNISQLAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVVRQTMGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHNQPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDIDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDVPAN 628
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378   |   388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628
                                                                                                                                                                                                                                                                                                                                                                                                               382-2TY
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3X40)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3X40)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3X40)

(-) Gene Ontology  (11, 11)

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  3x40
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  1.4.3.21
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        PAOX_ARTGO | P46881: 1av4 1avk 1avl 1iqx 1iqy 1iu7 1ivu 1ivv 1ivw 1ivx 1rjo 1sih 1sii 1ui7 1ui8 1w4n 1w5z 1w6c 1w6g 1wmn 1wmo 1wmp 2bt3 2cfd 2cfg 2cfk 2cfl 2cfw 2cg0 2cg1 2cwt 2cwu 2cwv 2d1w 2e2t 2e2u 2e2v 2yx9 2zl8 3amo 3kii 3kn4 3wa2 3wa3 3x3x 3x3y 3x3z 3x41 3x42

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