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(-) Description

Title :  CRYSTAL STRUCTURE OF CLEC-2 IN COMPLEX WITH RHODOCYTIN
 
Authors :  M. Nagae, K. Morita-Matsumoto, M. Kato, M. Kato-Kaneko, Y. Kato, Y. Yam
Date :  20 Jun 14  (Deposition) - 22 Oct 14  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.98
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Biol. Unit 3:  G,H,I  (1x)
Biol. Unit 4:  J,K,L  (1x)
Keywords :  C-Type Lectin Fold, Carbohydrate Binding, Podoplanin, Rhodocytin, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Nagae, K. Morita-Matsumoto, M. Kato, M. Kato-Kaneko, Y. Kato, Y. Yamaguchi
A Platform Of C-Type Lectin-Like Receptor Clec-2 For Bindin O-Glycosylated Podoplanin And Nonglycosylated Rhodocytin
Structure V. 22 1711 2014
PubMed-ID: 25458834  |  Reference-DOI: 10.1016/J.STR.2014.09.009

(-) Compounds

Molecule 1 - C-TYPE LECTIN DOMAIN FAMILY 1 MEMBER B
    Chains: C, I, L, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PCOLD
    Expression System Strain: ROSETTA2
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: CLEC-2, UNP RESIDUES 96-221
    Gene: CLEC1B, CLEC2, UNQ721/PRO1384
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CLEC-2 LECTIN, C-TYPE LECTIN-LIKE RECEPTOR 2, CLEC-2
 
Molecule 2 - SNACLEC RHODOCYTIN SUBUNIT ALPHA
    Chains: A, D, G, J
    Organism Common: MALAYAN PIT VIPER
    Organism Scientific: CALLOSELASMA RHODOSTOMA
    Organism Taxid: 8717
    Synonym: RHODOCYTIN ALPHA SUBUNIT, AGGRETIN ALPHA CHAIN, RHODOAGGRETIN SUBUNIT ALPHA
 
Molecule 3 - SNACLEC RHODOCYTIN SUBUNIT BETA
    Chains: B, E, H, K
    Organism Common: MALAYAN PIT VIPER
    Organism Scientific: CALLOSELASMA RHODOSTOMA
    Organism Taxid: 8717
    Synonym: RHODOCYTIN BETA SUBUNIT, AGGRETIN BETA CHAIN, RHODOAGGRETIN SUBUNIT BETA

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): ABC         
Biological Unit 2 (1x):    DEF      
Biological Unit 3 (1x):       GHI   
Biological Unit 4 (1x):          JKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3WWK)

(-) Sites  (0, 0)

(no "Site" information available for 3WWK)

(-) SS Bonds  (40, 40)

Asymmetric Unit
No.Residues
1A:5 -A:16
2A:33 -A:131
3A:83 -B:75
4A:106 -A:123
5B:2 -B:13
6B:30 -B:119
7B:96 -B:111
8C:102 -C:113
9C:130 -C:216
10C:195 -C:208
11D:5 -D:16
12D:33 -D:131
13D:83 -E:75
14D:106 -D:123
15E:2 -E:13
16E:30 -E:119
17E:96 -E:111
18F:102 -F:113
19F:130 -F:216
20F:195 -F:208
21G:5 -G:16
22G:33 -G:131
23G:83 -H:75
24G:106 -G:123
25H:2 -H:13
26H:30 -H:119
27H:96 -H:111
28I:102 -I:113
29I:130 -I:216
30I:195 -I:208
31J:5 -J:16
32J:33 -J:131
33J:83 -K:75
34J:106 -J:123
35K:2 -K:13
36K:30 -K:119
37K:96 -K:111
38L:102 -L:113
39L:130 -L:216
40L:195 -L:208

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3WWK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3WWK)

(-) PROSITE Motifs  (2, 20)

Asymmetric Unit (2, 20)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1C_TYPE_LECTIN_2PS50041 C-type lectin domain profile.SLYA_CALRH12-132
 
 
 		  4A:12-132
D:12-132
G:12-132
J:12-132
SLYB_CALRH32-143
 
 
 		  4B:9-120
E:9-120
H:9-120
K:9-120
CLC1B_HUMAN109-217
 
 
 		  4C:109-217
F:109-217
I:109-217
L:109-217
2C_TYPE_LECTIN_1PS00615 C-type lectin domain signature.SLYA_CALRH106-131
 
 
 		  4A:106-131
D:106-131
G:106-131
J:106-131
SLYB_CALRH119-142
 
 
 		  4B:96-119
E:96-119
H:96-119
K:96-119
Biological Unit 1 (2, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1C_TYPE_LECTIN_2PS50041 C-type lectin domain profile.SLYA_CALRH12-132
 
 
 		  1A:12-132
-
-
-
SLYB_CALRH32-143
 
 
 		  1B:9-120
-
-
-
CLC1B_HUMAN109-217
 
 
 		  1C:109-217
-
-
-
2C_TYPE_LECTIN_1PS00615 C-type lectin domain signature.SLYA_CALRH106-131
 
 
 		  1A:106-131
-
-
-
SLYB_CALRH119-142
 
 
 		  1B:96-119
-
-
-
Biological Unit 2 (2, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1C_TYPE_LECTIN_2PS50041 C-type lectin domain profile.SLYA_CALRH12-132
 
 
 		  1-
D:12-132
-
-
SLYB_CALRH32-143
 
 
 		  1-
E:9-120
-
-
CLC1B_HUMAN109-217
 
 
 		  1-
F:109-217
-
-
2C_TYPE_LECTIN_1PS00615 C-type lectin domain signature.SLYA_CALRH106-131
 
 
 		  1-
D:106-131
-
-
SLYB_CALRH119-142
 
 
 		  1-
E:96-119
-
-
Biological Unit 3 (2, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1C_TYPE_LECTIN_2PS50041 C-type lectin domain profile.SLYA_CALRH12-132
 
 
 		  1-
-
G:12-132
-
SLYB_CALRH32-143
 
 
 		  1-
-
H:9-120
-
CLC1B_HUMAN109-217
 
 
 		  1-
-
I:109-217
-
2C_TYPE_LECTIN_1PS00615 C-type lectin domain signature.SLYA_CALRH106-131
 
 
 		  1-
-
G:106-131
-
SLYB_CALRH119-142
 
 
 		  1-
-
H:96-119
-
Biological Unit 4 (2, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1C_TYPE_LECTIN_2PS50041 C-type lectin domain profile.SLYA_CALRH12-132
 
 
 		  1-
-
-
J:12-132
SLYB_CALRH32-143
 
 
 		  1-
-
-
K:9-120
CLC1B_HUMAN109-217
 
 
 		  1-
-
-
L:109-217
2C_TYPE_LECTIN_1PS00615 C-type lectin domain signature.SLYA_CALRH106-131
 
 
 		  1-
-
-
J:106-131
SLYB_CALRH119-142
 
 
 		  1-
-
-
K:96-119

(-) Exons   (3, 12)

Asymmetric Unit (3, 12)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000002985271ENSE00002178372chr12:10151899-10151636264CLC1B_HUMAN1-22220--
1.2ENST000002985272ENSE00001626056chr12:10150979-1015088199CLC1B_HUMAN22-55340--
1.3ENST000002985273ENSE00001677545chr12:10149878-10149759120CLC1B_HUMAN55-95410--
1.4aENST000002985274aENSE00001095413chr12:10149599-10149445155CLC1B_HUMAN95-146524C:100-146
F:100-146
I:100-146
L:100-146		47
47
47
47
1.9bENST000002985279bENSE00001095422chr12:10147845-10147739107CLC1B_HUMAN147-182364C:147-182
F:147-182
I:147-182
L:147-182		36
36
36
36
1.14aENST0000029852714aENSE00001375569chr12:10145886-10145664223CLC1B_HUMAN182-229484C:182-221
F:182-221
I:182-221
L:182-221		40
40
40
40

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:133
 aligned with SLYA_CALRH | Q9I841 from UniProtKB/Swiss-Prot  Length:136

    Alignment length:135
                                    11        21        31        41        51        61        71        81        91       101       111       121       131     
           SLYA_CALRH     2 LEDCDFGWSPYDQHCYQAFNEQKTWDEAEKFCRAQENGAHLASIESNGEADFVSWLISQKDELADEDYVWIGLRAQNKEQQCSSEWSDGSSVSYENLIDLHTKKCGALEKLTGFRKWVNYYCEQMHAFVCKLLPY 136
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........ee....eeeeeeeeehhhhhhhhhhh.....ee....hhhhhhhhhhhhhhh.......eeeeeeee......................--.....eeeee.hhh...eeee.....eeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------C_TYPE_LECTIN_2  PDB: A:12-132 UniProt: 12-132                                                                           ---- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------------------------------------C_TYPE_LECTIN_1           ----- PROSITE (3)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wwk A   2 LEDCDFGWSPYDQHCYQAFNEQKTWDEAEKFCRAQENGAHLASIESNGEADFVSWLISQKDELADEDYVWIGLRAQNKEQQCSSEWSDGSSVSYENL--LHTKKCGALEKLTGFRKWVNYYCEQMHAFVCKLLPY 136
                                    11        21        31        41        51        61        71        81        91      |101       111       121       131     
                                                                                                                           98  |                                   
                                                                                                                             101                                   


Chain B from PDB  Type:PROTEIN  Length:123
 aligned with SLYB_CALRH | Q9I840 from UniProtKB/Swiss-Prot  Length:146

    Alignment length:123
                                    33        43        53        63        73        83        93       103       113       123       133       143   
           SLYB_CALRH    24 DCPSGWSSYEGHCYKPFNEPKNWADAERFCKLQPKHSHLVSFQSAEEADFVVKLTRPRLKANLVWMGLSNIWHGCNWQWSDGARLNYKDWQEQSECLAFRGVHTEWLNMDCSSTCSFVCKFKA 146
               SCOP domains --------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eeeeeeeeeehhhhhhhhhhh.....ee....hhhhhhhhhhhhhhhhh..eeeeeee.......eee...............eeeeee.....eeeee....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------C_TYPE_LECTIN_2  PDB: B:9-120 UniProt: 32-143                                                                   --- PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) --------------------------------------------------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) -----------------------------------------------------------------------------------------------C_TYPE_LECTIN_1         ---- PROSITE (5)
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wwk B   1 DCPSGWSSYEGHCYKPFNEPKNWADAERFCKLQPKHSHLVSFQSAEEADFVVKLTRPRLKANLVWMGLSNIWHGCNWQWSDGARLNYKDWQEQSECLAFRGVHTEWLNMDCSSTCSFVCKFKA 123
                                    10        20        30        40        50        60        70        80        90       100       110       120   


Chain C from PDB  Type:PROTEIN  Length:122
 aligned with CLC1B_HUMAN | Q9P126 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:122
                                   109       119       129       139       149       159       169       179       189       199       209       219  
          CLC1B_HUMAN   100 SPCDTNWRYYGDSCYGFFRHNLTWEESKQYCTDMNATLLKIDNRNIVEYIKARTHLIRWVGLSRQKSNEVWKWEDGSVISENMFEFLEDGKGNMNCAYFHNGKMHPTFCENKHYLMCERKAG 221
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee..eeeeeeeeeehhhhhhhhhhhh..ee....hhhhhhhhhhhh...eeeeee................hhhhhhhh........eeeee..eeeee.....eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ---------C_TYPE_LECTIN_2  PDB: C:109-217 UniProt: 109-217                                                             ---- PROSITE (4)
           Transcript 1 (1) Exon 1.4a  PDB: C:100-146 UniProt: 95-146      -----------------------------------Exon 1.14a  PDB: C:182-221 [INCOMPLETE]  Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------Exon 1.9b  PDB: C:147-182           --------------------------------------- Transcript 1 (2)
                 3wwk C 100 SPCDTNWRYYGDSCYGFFRHNLTWEESKQYCTDMNATLLKIDNRNIVEYIKARTHLIRWVGLSRQKSNEVWKWEDGSVISENMFEFLEDGKGNMNCAYFHNGKMHPTFCENKHYLMCERKAG 221
                                   109       119       129       139       149       159       169       179       189       199       209       219  


Chain D from PDB  Type:PROTEIN  Length:133
 aligned with SLYA_CALRH | Q9I841 from UniProtKB/Swiss-Prot  Length:136

    Alignment length:135
                                    11        21        31        41        51        61        71        81        91       101       111       121       131     
           SLYA_CALRH     2 LEDCDFGWSPYDQHCYQAFNEQKTWDEAEKFCRAQENGAHLASIESNGEADFVSWLISQKDELADEDYVWIGLRAQNKEQQCSSEWSDGSSVSYENLIDLHTKKCGALEKLTGFRKWVNYYCEQMHAFVCKLLPY 136
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........ee....eeeeeeeeehhhhhhhhhhhh....ee....hhhhhhhhhhhhhhh.......eeeeeeee......................--.....eeeee.hhh...eeee.....eeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------C_TYPE_LECTIN_2  PDB: D:12-132 UniProt: 12-132                                                                           ---- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------------------------------------C_TYPE_LECTIN_1           ----- PROSITE (3)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wwk D   2 LEDCDFGWSPYDQHCYQAFNEQKTWDEAEKFCRAQENGAHLASIESNGEADFVSWLISQKDELADEDYVWIGLRAQNKEQQCSSEWSDGSSVSYENL--LHTKKCGALEKLTGFRKWVNYYCEQMHAFVCKLLPY 136
                                    11        21        31        41        51        61        71        81        91      |101       111       121       131     
                                                                                                                           98  |                                   
                                                                                                                             101                                   


Chain E from PDB  Type:PROTEIN  Length:123
 aligned with SLYB_CALRH | Q9I840 from UniProtKB/Swiss-Prot  Length:146

    Alignment length:123
                                    33        43        53        63        73        83        93       103       113       123       133       143   
           SLYB_CALRH    24 DCPSGWSSYEGHCYKPFNEPKNWADAERFCKLQPKHSHLVSFQSAEEADFVVKLTRPRLKANLVWMGLSNIWHGCNWQWSDGARLNYKDWQEQSECLAFRGVHTEWLNMDCSSTCSFVCKFKA 146
               SCOP domains --------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eeeeeeeeeehhhhhhhhhhh.....ee....hhhhhhhhhhhhhhhh...eeeeeee.......eee...............eeeeee.....eeeee....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------C_TYPE_LECTIN_2  PDB: E:9-120 UniProt: 32-143                                                                   --- PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) --------------------------------------------------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) -----------------------------------------------------------------------------------------------C_TYPE_LECTIN_1         ---- PROSITE (5)
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wwk E   1 DCPSGWSSYEGHCYKPFNEPKNWADAERFCKLQPKHSHLVSFQSAEEADFVVKLTRPRLKANLVWMGLSNIWHGCNWQWSDGARLNYKDWQEQSECLAFRGVHTEWLNMDCSSTCSFVCKFKA 123
                                    10        20        30        40        50        60        70        80        90       100       110       120   


Chain F from PDB  Type:PROTEIN  Length:122
 aligned with CLC1B_HUMAN | Q9P126 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:122
                                   109       119       129       139       149       159       169       179       189       199       209       219  
          CLC1B_HUMAN   100 SPCDTNWRYYGDSCYGFFRHNLTWEESKQYCTDMNATLLKIDNRNIVEYIKARTHLIRWVGLSRQKSNEVWKWEDGSVISENMFEFLEDGKGNMNCAYFHNGKMHPTFCENKHYLMCERKAG 221
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee..eeeeeeeeeehhhhhhhhhhhh..ee....hhhhhhhhhhhh...eeeeee................hhhhhhhh........eeeee..eeeee.....eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ---------C_TYPE_LECTIN_2  PDB: F:109-217 UniProt: 109-217                                                             ---- PROSITE (4)
           Transcript 1 (1) Exon 1.4a  PDB: F:100-146 UniProt: 95-146      -----------------------------------Exon 1.14a  PDB: F:182-221 [INCOMPLETE]  Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------Exon 1.9b  PDB: F:147-182           --------------------------------------- Transcript 1 (2)
                 3wwk F 100 SPCDTNWRYYGDSCYGFFRHNLTWEESKQYCTDMNATLLKIDNRNIVEYIKARTHLIRWVGLSRQKSNEVWKWEDGSVISENMFEFLEDGKGNMNCAYFHNGKMHPTFCENKHYLMCERKAG 221
                                   109       119       129       139       149       159       169       179       189       199       209       219  


Chain G from PDB  Type:PROTEIN  Length:133
 aligned with SLYA_CALRH | Q9I841 from UniProtKB/Swiss-Prot  Length:136

    Alignment length:135
                                    11        21        31        41        51        61        71        81        91       101       111       121       131     
           SLYA_CALRH     2 LEDCDFGWSPYDQHCYQAFNEQKTWDEAEKFCRAQENGAHLASIESNGEADFVSWLISQKDELADEDYVWIGLRAQNKEQQCSSEWSDGSSVSYENLIDLHTKKCGALEKLTGFRKWVNYYCEQMHAFVCKLLPY 136
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........ee....eeeeeeeeehhhhhhhhhhh.....ee....hhhhhhhhhhhhhhh.......eeeeeeee......................--.....eeeee.hhh...eeee.....eeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------C_TYPE_LECTIN_2  PDB: G:12-132 UniProt: 12-132                                                                           ---- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------------------------------------C_TYPE_LECTIN_1           ----- PROSITE (3)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wwk G   2 LEDCDFGWSPYDQHCYQAFNEQKTWDEAEKFCRAQENGAHLASIESNGEADFVSWLISQKDELADEDYVWIGLRAQNKEQQCSSEWSDGSSVSYENL--LHTKKCGALEKLTGFRKWVNYYCEQMHAFVCKLLPY 136
                                    11        21        31        41        51        61        71        81        91      |101       111       121       131     
                                                                                                                           98  |                                   
                                                                                                                             101                                   


Chain H from PDB  Type:PROTEIN  Length:123
 aligned with SLYB_CALRH | Q9I840 from UniProtKB/Swiss-Prot  Length:146

    Alignment length:123
                                    33        43        53        63        73        83        93       103       113       123       133       143   
           SLYB_CALRH    24 DCPSGWSSYEGHCYKPFNEPKNWADAERFCKLQPKHSHLVSFQSAEEADFVVKLTRPRLKANLVWMGLSNIWHGCNWQWSDGARLNYKDWQEQSECLAFRGVHTEWLNMDCSSTCSFVCKFKA 146
               SCOP domains --------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eeeeeeeeeehhhhhhhhhhh.....ee....hhhhhhhhhhhhhhhhh..eeeeeee.......eee...............eeeeee.....eeeee....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------C_TYPE_LECTIN_2  PDB: H:9-120 UniProt: 32-143                                                                   --- PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) --------------------------------------------------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) -----------------------------------------------------------------------------------------------C_TYPE_LECTIN_1         ---- PROSITE (5)
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wwk H   1 DCPSGWSSYEGHCYKPFNEPKNWADAERFCKLQPKHSHLVSFQSAEEADFVVKLTRPRLKANLVWMGLSNIWHGCNWQWSDGARLNYKDWQEQSECLAFRGVHTEWLNMDCSSTCSFVCKFKA 123
                                    10        20        30        40        50        60        70        80        90       100       110       120   


Chain I from PDB  Type:PROTEIN  Length:122
 aligned with CLC1B_HUMAN | Q9P126 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:122
                                   109       119       129       139       149       159       169       179       189       199       209       219  
          CLC1B_HUMAN   100 SPCDTNWRYYGDSCYGFFRHNLTWEESKQYCTDMNATLLKIDNRNIVEYIKARTHLIRWVGLSRQKSNEVWKWEDGSVISENMFEFLEDGKGNMNCAYFHNGKMHPTFCENKHYLMCERKAG 221
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee..eeeeeeeeeehhhhhhhhhhhh..ee....hhhhhhhhhhhh...eeeeee................hhhhhhhh........eeeee..eeeee.....eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ---------C_TYPE_LECTIN_2  PDB: I:109-217 UniProt: 109-217                                                             ---- PROSITE (4)
           Transcript 1 (1) Exon 1.4a  PDB: I:100-146 UniProt: 95-146      -----------------------------------Exon 1.14a  PDB: I:182-221 [INCOMPLETE]  Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------Exon 1.9b  PDB: I:147-182           --------------------------------------- Transcript 1 (2)
                 3wwk I 100 SPCDTNWRYYGDSCYGFFRHNLTWEESKQYCTDMNATLLKIDNRNIVEYIKARTHLIRWVGLSRQKSNEVWKWEDGSVISENMFEFLEDGKGNMNCAYFHNGKMHPTFCENKHYLMCERKAG 221
                                   109       119       129       139       149       159       169       179       189       199       209       219  


Chain J from PDB  Type:PROTEIN  Length:127
 aligned with SLYA_CALRH | Q9I841 from UniProtKB/Swiss-Prot  Length:136

    Alignment length:135
                                    11        21        31        41        51        61        71        81        91       101       111       121       131     
           SLYA_CALRH     2 LEDCDFGWSPYDQHCYQAFNEQKTWDEAEKFCRAQENGAHLASIESNGEADFVSWLISQKDELADEDYVWIGLRAQNKEQQCSSEWSDGSSVSYENLIDLHTKKCGALEKLTGFRKWVNYYCEQMHAFVCKLLPY 136
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eee..eeeee.....hhhhhhhhhhhh....ee....hhhhhh.........------.eeeeeeee......................--.....eeeee.......eeee......eeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------C_TYPE_LECTIN_2  PDB: J:12-132 UniProt: 12-132                                                                           ---- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------------------------------------C_TYPE_LECTIN_1           ----- PROSITE (3)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wwk J   2 LEDCDFGWSPYDQHCYQAFNEQKTWDEAEKFCRAQENGAHLASIESNGEADFVSWLISQK------DYVWIGLRAQNKEQQCSSEWSDGSSVSYENL--LHTKKCGALEKLTGFRKWVNYYCEQMHAFVCKLLPY 136
                                    11        21        31        41        51        61      | 71        81        91      |101       111       121       131     
                                                                                      61     68                            98  |                                   
                                                                                                                             101                                   


Chain K from PDB  Type:PROTEIN  Length:123
 aligned with SLYB_CALRH | Q9I840 from UniProtKB/Swiss-Prot  Length:146

    Alignment length:123
                                    33        43        53        63        73        83        93       103       113       123       133       143   
           SLYB_CALRH    24 DCPSGWSSYEGHCYKPFNEPKNWADAERFCKLQPKHSHLVSFQSAEEADFVVKLTRPRLKANLVWMGLSNIWHGCNWQWSDGARLNYKDWQEQSECLAFRGVHTEWLNMDCSSTCSFVCKFKA 146
               SCOP domains --------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eeeeeeeeeehhhhhhhhhhh.....ee....hhhhhhhhhhhhhhhhh..eeeeeee.......eee...............eeeeee.....eeeee....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------C_TYPE_LECTIN_2  PDB: K:9-120 UniProt: 32-143                                                                   --- PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) --------------------------------------------------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) -----------------------------------------------------------------------------------------------C_TYPE_LECTIN_1         ---- PROSITE (5)
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wwk K   1 DCPSGWSSYEGHCYKPFNEPKNWADAERFCKLQPKHSHLVSFQSAEEADFVVKLTRPRLKANLVWMGLSNIWHGCNWQWSDGARLNYKDWQEQSECLAFRGVHTEWLNMDCSSTCSFVCKFKA 123
                                    10        20        30        40        50        60        70        80        90       100       110       120   


Chain L from PDB  Type:PROTEIN  Length:122
 aligned with CLC1B_HUMAN | Q9P126 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:122
                                   109       119       129       139       149       159       169       179       189       199       209       219  
          CLC1B_HUMAN   100 SPCDTNWRYYGDSCYGFFRHNLTWEESKQYCTDMNATLLKIDNRNIVEYIKARTHLIRWVGLSRQKSNEVWKWEDGSVISENMFEFLEDGKGNMNCAYFHNGKMHPTFCENKHYLMCERKAG 221
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee..eeeeeeeeeeehhhhhhhhhhh........hhhhhhhhhhhh...eeeeee................hhhhhhhh........eeeee..ee.......eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ---------C_TYPE_LECTIN_2  PDB: L:109-217 UniProt: 109-217                                                             ---- PROSITE (4)
           Transcript 1 (1) Exon 1.4a  PDB: L:100-146 UniProt: 95-146      -----------------------------------Exon 1.14a  PDB: L:182-221 [INCOMPLETE]  Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------Exon 1.9b  PDB: L:147-182           --------------------------------------- Transcript 1 (2)
                 3wwk L 100 SPCDTNWRYYGDSCYGFFRHNLTWEESKQYCTDMNATLLKIDNRNIVEYIKARTHLIRWVGLSRQKSNEVWKWEDGSVISENMFEFLEDGKGNMNCAYFHNGKMHPTFCENKHYLMCERKAG 221
                                   109       119       129       139       149       159       169       179       189       199       209       219
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3WWK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3WWK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3WWK)

(-) Gene Ontology  (14, 16)

Asymmetric Unit(hide GO term definitions)
Chain A,D,G,J   (SLYA_CALRH | Q9I841)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0060300    regulation of cytokine activity    Any process that modulates the rate, frequency or extent of the activity of a molecule that controls the survival, growth, differentiation and effector function of tissues and cells.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Chain B,E,H,K   (SLYB_CALRH | Q9I840)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Chain C,F,I,L   (CLC1B_HUMAN | Q9P126)
molecular function
    GO:0030246    carbohydrate binding    Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004888    transmembrane signaling receptor activity    Combining with an extracellular or intracellular signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity or state as part of signal transduction.
biological process
    GO:0007166    cell surface receptor signaling pathway    A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription.
    GO:0006952    defense response    Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
    GO:0030168    platelet activation    A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug.
    GO:0030220    platelet formation    The process in which platelets bud from long processes extended by megakaryocytes.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005887    integral component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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  SLYA_CALRH | Q9I841
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  SLYB_CALRH | Q9I840
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CLC1B_HUMAN | Q9P126: 2c6u 3wsr
        SLYA_CALRH | Q9I841: 2vrp 3bx4
        SLYB_CALRH | Q9I840: 2vrp 3bx4

(-) Related Entries Specified in the PDB File

3wsr