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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF CLEC-2 IN COMPLEX WITH RHODOCYTIN
Keywords C-TYPE LECTIN FOLD, CARBOHYDRATE BINDING, PODOPLANIN, RHODOC SUGAR BINDING PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3WWK     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   C-TYPE LECTIN DOMAIN FAMILY 1 MEMBER B  C 122 1023 0
2  Protein   SNACLEC RHODOCYTIN SUBUNIT ALPHA  A 133 1092 0
3  Protein   SNACLEC RHODOCYTIN SUBUNIT BETA  B 123 1010 0
4  Protein   SNACLEC RHODOCYTIN SUBUNIT ALPHA  D 133 1092 0
5  Protein   SNACLEC RHODOCYTIN SUBUNIT BETA  E 123 1010 0
6  Protein   C-TYPE LECTIN DOMAIN FAMILY 1 MEMBER B  I 122 1023 0
7  Protein   SNACLEC RHODOCYTIN SUBUNIT ALPHA  G 133 1092 0
8  Protein   SNACLEC RHODOCYTIN SUBUNIT BETA  H 123 1010 0
9  Protein   SNACLEC RHODOCYTIN SUBUNIT ALPHA  J 127 1045 0
10  Protein   SNACLEC RHODOCYTIN SUBUNIT BETA  K 123 1010 0
11  Protein   C-TYPE LECTIN DOMAIN FAMILY 1 MEMBER B  L 122 1023 0
12  Protein   C-TYPE LECTIN DOMAIN FAMILY 1 MEMBER B  F 122 1023 0
total       1506 12453 0
Proteins
Unit 1 SER100 PRO101 CYS102 ASP103 THR104 ASN105 TRP106 ARG107 TYR108 TYR109 GLY110 ASP111 SER112 CYS113 TYR114 GLY115 PHE116 PHE117 ARG118 HIS119 ASN120 LEU121 THR122 TRP123 GLU124 GLU125 SER126 LYS127 GLN128 TYR129 CYS130 THR131 ASP132 MET133 ASN134 ALA135 THR136 LEU137 LEU138 LYS139 ILE140 ASP141 ASN142 ARG143 ASN144 ILE145 VAL146 GLU147 TYR148 ILE149 LYS150 ALA151 ARG152 THR153 HIS154 LEU155 ILE156 ARG157 TRP158 VAL159 GLY160 LEU161 SER162 ARG163 GLN164 LYS165 SER166 ASN167 GLU168 VAL169 TRP170 LYS171 TRP172 GLU173 ASP174 GLY175 SER176 VAL177 ILE178 SER179 GLU180 ASN181 MET182 PHE183 GLU184 PHE185 LEU186 GLU187 ASP188 GLY189 LYS190 GLY191 ASN192 MET193 ASN194 CYS195 ALA196 TYR197 PHE198 HIS199 ASN200 GLY201 LYS202 MET203 HIS204 PRO205 THR206 PHE207 CYS208 GLU209 ASN210 LYS211 HIS212 TYR213 LEU214 MET215 CYS216 GLU217 ARG218 LYS219 ALA220 GLY221
Unit 2 LEU2 GLU3 ASP4 CYS5 ASP6 PHE7 GLY8 TRP9 SER10 PRO11 TYR12 ASP13 GLN14 HIS15 CYS16 TYR17 GLN18 ALA19 PHE20 ASN21 GLU22 GLN23 LYS24 THR25 TRP26 ASP27 GLU28 ALA29 GLU30 LYS31 PHE32 CYS33 ARG34 ALA35 GLN36 GLU37 ASN38 GLY39 ALA40 HIS41 LEU42 ALA43 SER44 ILE45 GLU46 SER47 ASN48 GLY49 GLU50 ALA51 ASP52 PHE53 VAL54 SER55 TRP56 LEU57 ILE58 SER59 GLN60 LYS61 ASP62 GLU63 LEU64 ALA65 ASP66 GLU67 ASP68 TYR69 VAL70 TRP71 ILE72 GLY73 LEU74 ARG75 ALA76 GLN77 ASN78 LYS79 GLU80 GLN81 GLN82 CYS83 SER84 SER85 GLU86 TRP87 SER88 ASP89 GLY90 SER91 SER92 VAL93 SER94 TYR95 GLU96 ASN97 LEU98 LEU101 HIS102 THR103 LYS104 LYS105 CYS106 GLY107 ALA108 LEU109 GLU110 LYS111 LEU112 THR113 GLY114 PHE115 ARG116 LYS117 TRP118 VAL119 ASN120 TYR121 TYR122 CYS123 GLU124 GLN125 MET126 HIS127 ALA128 PHE129 VAL130 CYS131 LYS132 LEU133 LEU134 PRO135 TYR136
Unit 3 ASP1 CYS2 PRO3 SER4 GLY5 TRP6 SER7 SER8 TYR9 GLU10 GLY11 HIS12 CYS13 TYR14 LYS15 PRO16 PHE17 ASN18 GLU19 PRO20 LYS21 ASN22 TRP23 ALA24 ASP25 ALA26 GLU27 ARG28 PHE29 CYS30 LYS31 LEU32 GLN33 PRO34 LYS35 HIS36 SER37 HIS38 LEU39 VAL40 SER41 PHE42 GLN43 SER44 ALA45 GLU46 GLU47 ALA48 ASP49 PHE50 VAL51 VAL52 LYS53 LEU54 THR55 ARG56 PRO57 ARG58 LEU59 LYS60 ALA61 ASN62 LEU63 VAL64 TRP65 MET66 GLY67 LEU68 SER69 ASN70 ILE71 TRP72 HIS73 GLY74 CYS75 ASN76 TRP77 GLN78 TRP79 SER80 ASP81 GLY82 ALA83 ARG84 LEU85 ASN86 TYR87 LYS88 ASP89 TRP90 GLN91 GLU92 GLN93 SER94 GLU95 CYS96 LEU97 ALA98 PHE99 ARG100 GLY101 VAL102 HIS103 THR104 GLU105 TRP106 LEU107 ASN108 MET109 ASP110 CYS111 SER112 SER113 THR114 CYS115 SER116 PHE117 VAL118 CYS119 LYS120 PHE121 LYS122 ALA123
Unit 4 LEU2 GLU3 ASP4 CYS5 ASP6 PHE7 GLY8 TRP9 SER10 PRO11 TYR12 ASP13 GLN14 HIS15 CYS16 TYR17 GLN18 ALA19 PHE20 ASN21 GLU22 GLN23 LYS24 THR25 TRP26 ASP27 GLU28 ALA29 GLU30 LYS31 PHE32 CYS33 ARG34 ALA35 GLN36 GLU37 ASN38 GLY39 ALA40 HIS41 LEU42 ALA43 SER44 ILE45 GLU46 SER47 ASN48 GLY49 GLU50 ALA51 ASP52 PHE53 VAL54 SER55 TRP56 LEU57 ILE58 SER59 GLN60 LYS61 ASP62 GLU63 LEU64 ALA65 ASP66 GLU67 ASP68 TYR69 VAL70 TRP71 ILE72 GLY73 LEU74 ARG75 ALA76 GLN77 ASN78 LYS79 GLU80 GLN81 GLN82 CYS83 SER84 SER85 GLU86 TRP87 SER88 ASP89 GLY90 SER91 SER92 VAL93 SER94 TYR95 GLU96 ASN97 LEU98 LEU101 HIS102 THR103 LYS104 LYS105 CYS106 GLY107 ALA108 LEU109 GLU110 LYS111 LEU112 THR113 GLY114 PHE115 ARG116 LYS117 TRP118 VAL119 ASN120 TYR121 TYR122 CYS123 GLU124 GLN125 MET126 HIS127 ALA128 PHE129 VAL130 CYS131 LYS132 LEU133 LEU134 PRO135 TYR136
Unit 5 ASP1 CYS2 PRO3 SER4 GLY5 TRP6 SER7 SER8 TYR9 GLU10 GLY11 HIS12 CYS13 TYR14 LYS15 PRO16 PHE17 ASN18 GLU19 PRO20 LYS21 ASN22 TRP23 ALA24 ASP25 ALA26 GLU27 ARG28 PHE29 CYS30 LYS31 LEU32 GLN33 PRO34 LYS35 HIS36 SER37 HIS38 LEU39 VAL40 SER41 PHE42 GLN43 SER44 ALA45 GLU46 GLU47 ALA48 ASP49 PHE50 VAL51 VAL52 LYS53 LEU54 THR55 ARG56 PRO57 ARG58 LEU59 LYS60 ALA61 ASN62 LEU63 VAL64 TRP65 MET66 GLY67 LEU68 SER69 ASN70 ILE71 TRP72 HIS73 GLY74 CYS75 ASN76 TRP77 GLN78 TRP79 SER80 ASP81 GLY82 ALA83 ARG84 LEU85 ASN86 TYR87 LYS88 ASP89 TRP90 GLN91 GLU92 GLN93 SER94 GLU95 CYS96 LEU97 ALA98 PHE99 ARG100 GLY101 VAL102 HIS103 THR104 GLU105 TRP106 LEU107 ASN108 MET109 ASP110 CYS111 SER112 SER113 THR114 CYS115 SER116 PHE117 VAL118 CYS119 LYS120 PHE121 LYS122 ALA123
Unit 6 SER100 PRO101 CYS102 ASP103 THR104 ASN105 TRP106 ARG107 TYR108 TYR109 GLY110 ASP111 SER112 CYS113 TYR114 GLY115 PHE116 PHE117 ARG118 HIS119 ASN120 LEU121 THR122 TRP123 GLU124 GLU125 SER126 LYS127 GLN128 TYR129 CYS130 THR131 ASP132 MET133 ASN134 ALA135 THR136 LEU137 LEU138 LYS139 ILE140 ASP141 ASN142 ARG143 ASN144 ILE145 VAL146 GLU147 TYR148 ILE149 LYS150 ALA151 ARG152 THR153 HIS154 LEU155 ILE156 ARG157 TRP158 VAL159 GLY160 LEU161 SER162 ARG163 GLN164 LYS165 SER166 ASN167 GLU168 VAL169 TRP170 LYS171 TRP172 GLU173 ASP174 GLY175 SER176 VAL177 ILE178 SER179 GLU180 ASN181 MET182 PHE183 GLU184 PHE185 LEU186 GLU187 ASP188 GLY189 LYS190 GLY191 ASN192 MET193 ASN194 CYS195 ALA196 TYR197 PHE198 HIS199 ASN200 GLY201 LYS202 MET203 HIS204 PRO205 THR206 PHE207 CYS208 GLU209 ASN210 LYS211 HIS212 TYR213 LEU214 MET215 CYS216 GLU217 ARG218 LYS219 ALA220 GLY221
Unit 7 LEU2 GLU3 ASP4 CYS5 ASP6 PHE7 GLY8 TRP9 SER10 PRO11 TYR12 ASP13 GLN14 HIS15 CYS16 TYR17 GLN18 ALA19 PHE20 ASN21 GLU22 GLN23 LYS24 THR25 TRP26 ASP27 GLU28 ALA29 GLU30 LYS31 PHE32 CYS33 ARG34 ALA35 GLN36 GLU37 ASN38 GLY39 ALA40 HIS41 LEU42 ALA43 SER44 ILE45 GLU46 SER47 ASN48 GLY49 GLU50 ALA51 ASP52 PHE53 VAL54 SER55 TRP56 LEU57 ILE58 SER59 GLN60 LYS61 ASP62 GLU63 LEU64 ALA65 ASP66 GLU67 ASP68 TYR69 VAL70 TRP71 ILE72 GLY73 LEU74 ARG75 ALA76 GLN77 ASN78 LYS79 GLU80 GLN81 GLN82 CYS83 SER84 SER85 GLU86 TRP87 SER88 ASP89 GLY90 SER91 SER92 VAL93 SER94 TYR95 GLU96 ASN97 LEU98 LEU101 HIS102 THR103 LYS104 LYS105 CYS106 GLY107 ALA108 LEU109 GLU110 LYS111 LEU112 THR113 GLY114 PHE115 ARG116 LYS117 TRP118 VAL119 ASN120 TYR121 TYR122 CYS123 GLU124 GLN125 MET126 HIS127 ALA128 PHE129 VAL130 CYS131 LYS132 LEU133 LEU134 PRO135 TYR136
Unit 8 ASP1 CYS2 PRO3 SER4 GLY5 TRP6 SER7 SER8 TYR9 GLU10 GLY11 HIS12 CYS13 TYR14 LYS15 PRO16 PHE17 ASN18 GLU19 PRO20 LYS21 ASN22 TRP23 ALA24 ASP25 ALA26 GLU27 ARG28 PHE29 CYS30 LYS31 LEU32 GLN33 PRO34 LYS35 HIS36 SER37 HIS38 LEU39 VAL40 SER41 PHE42 GLN43 SER44 ALA45 GLU46 GLU47 ALA48 ASP49 PHE50 VAL51 VAL52 LYS53 LEU54 THR55 ARG56 PRO57 ARG58 LEU59 LYS60 ALA61 ASN62 LEU63 VAL64 TRP65 MET66 GLY67 LEU68 SER69 ASN70 ILE71 TRP72 HIS73 GLY74 CYS75 ASN76 TRP77 GLN78 TRP79 SER80 ASP81 GLY82 ALA83 ARG84 LEU85 ASN86 TYR87 LYS88 ASP89 TRP90 GLN91 GLU92 GLN93 SER94 GLU95 CYS96 LEU97 ALA98 PHE99 ARG100 GLY101 VAL102 HIS103 THR104 GLU105 TRP106 LEU107 ASN108 MET109 ASP110 CYS111 SER112 SER113 THR114 CYS115 SER116 PHE117 VAL118 CYS119 LYS120 PHE121 LYS122 ALA123
Unit 9 LEU2 GLU3 ASP4 CYS5 ASP6 PHE7 GLY8 TRP9 SER10 PRO11 TYR12 ASP13 GLN14 HIS15 CYS16 TYR17 GLN18 ALA19 PHE20 ASN21 GLU22 GLN23 LYS24 THR25 TRP26 ASP27 GLU28 ALA29 GLU30 LYS31 PHE32 CYS33 ARG34 ALA35 GLN36 GLU37 ASN38 GLY39 ALA40 HIS41 LEU42 ALA43 SER44 ILE45 GLU46 SER47 ASN48 GLY49 GLU50 ALA51 ASP52 PHE53 VAL54 SER55 TRP56 LEU57 ILE58 SER59 GLN60 LYS61 ASP68 TYR69 VAL70 TRP71 ILE72 GLY73 LEU74 ARG75 ALA76 GLN77 ASN78 LYS79 GLU80 GLN81 GLN82 CYS83 SER84 SER85 GLU86 TRP87 SER88 ASP89 GLY90 SER91 SER92 VAL93 SER94 TYR95 GLU96 ASN97 LEU98 LEU101 HIS102 THR103 LYS104 LYS105 CYS106 GLY107 ALA108 LEU109 GLU110 LYS111 LEU112 THR113 GLY114 PHE115 ARG116 LYS117 TRP118 VAL119 ASN120 TYR121 TYR122 CYS123 GLU124 GLN125 MET126 HIS127 ALA128 PHE129 VAL130 CYS131 LYS132 LEU133 LEU134 PRO135 TYR136
Unit 10 ASP1 CYS2 PRO3 SER4 GLY5 TRP6 SER7 SER8 TYR9 GLU10 GLY11 HIS12 CYS13 TYR14 LYS15 PRO16 PHE17 ASN18 GLU19 PRO20 LYS21 ASN22 TRP23 ALA24 ASP25 ALA26 GLU27 ARG28 PHE29 CYS30 LYS31 LEU32 GLN33 PRO34 LYS35 HIS36 SER37 HIS38 LEU39 VAL40 SER41 PHE42 GLN43 SER44 ALA45 GLU46 GLU47 ALA48 ASP49 PHE50 VAL51 VAL52 LYS53 LEU54 THR55 ARG56 PRO57 ARG58 LEU59 LYS60 ALA61 ASN62 LEU63 VAL64 TRP65 MET66 GLY67 LEU68 SER69 ASN70 ILE71 TRP72 HIS73 GLY74 CYS75 ASN76 TRP77 GLN78 TRP79 SER80 ASP81 GLY82 ALA83 ARG84 LEU85 ASN86 TYR87 LYS88 ASP89 TRP90 GLN91 GLU92 GLN93 SER94 GLU95 CYS96 LEU97 ALA98 PHE99 ARG100 GLY101 VAL102 HIS103 THR104 GLU105 TRP106 LEU107 ASN108 MET109 ASP110 CYS111 SER112 SER113 THR114 CYS115 SER116 PHE117 VAL118 CYS119 LYS120 PHE121 LYS122 ALA123
Unit 11 SER100 PRO101 CYS102 ASP103 THR104 ASN105 TRP106 ARG107 TYR108 TYR109 GLY110 ASP111 SER112 CYS113 TYR114 GLY115 PHE116 PHE117 ARG118 HIS119 ASN120 LEU121 THR122 TRP123 GLU124 GLU125 SER126 LYS127 GLN128 TYR129 CYS130 THR131 ASP132 MET133 ASN134 ALA135 THR136 LEU137 LEU138 LYS139 ILE140 ASP141 ASN142 ARG143 ASN144 ILE145 VAL146 GLU147 TYR148 ILE149 LYS150 ALA151 ARG152 THR153 HIS154 LEU155 ILE156 ARG157 TRP158 VAL159 GLY160 LEU161 SER162 ARG163 GLN164 LYS165 SER166 ASN167 GLU168 VAL169 TRP170 LYS171 TRP172 GLU173 ASP174 GLY175 SER176 VAL177 ILE178 SER179 GLU180 ASN181 MET182 PHE183 GLU184 PHE185 LEU186 GLU187 ASP188 GLY189 LYS190 GLY191 ASN192 MET193 ASN194 CYS195 ALA196 TYR197 PHE198 HIS199 ASN200 GLY201 LYS202 MET203 HIS204 PRO205 THR206 PHE207 CYS208 GLU209 ASN210 LYS211 HIS212 TYR213 LEU214 MET215 CYS216 GLU217 ARG218 LYS219 ALA220 GLY221
Unit 12 SER100 PRO101 CYS102 ASP103 THR104 ASN105 TRP106 ARG107 TYR108 TYR109 GLY110 ASP111 SER112 CYS113 TYR114 GLY115 PHE116 PHE117 ARG118 HIS119 ASN120 LEU121 THR122 TRP123 GLU124 GLU125 SER126 LYS127 GLN128 TYR129 CYS130 THR131 ASP132 MET133 ASN134 ALA135 THR136 LEU137 LEU138 LYS139 ILE140 ASP141 ASN142 ARG143 ASN144 ILE145 VAL146 GLU147 TYR148 ILE149 LYS150 ALA151 ARG152 THR153 HIS154 LEU155 ILE156 ARG157 TRP158 VAL159 GLY160 LEU161 SER162 ARG163 GLN164 LYS165 SER166 ASN167 GLU168 VAL169 TRP170 LYS171 TRP172 GLU173 ASP174 GLY175 SER176 VAL177 ILE178 SER179 GLU180 ASN181 MET182 PHE183 GLU184 PHE185 LEU186 GLU187 ASP188 GLY189 LYS190 GLY191 ASN192 MET193 ASN194 CYS195 ALA196 TYR197 PHE198 HIS199 ASN200 GLY201 LYS202 MET203 HIS204 PRO205 THR206 PHE207 CYS208 GLU209 ASN210 LYS211 HIS212 TYR213 LEU214 MET215 CYS216 GLU217 ARG218 LYS219 ALA220 GLY221
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany