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(-) Description

Title :  TRNA PROCESSING ENZYME COMPLEX 2
 
Authors :  S. Yamashita, D. Takeshita, K. Tomita
Date :  23 Jul 13  (Deposition) - 01 Jan 14  (Release) - 28 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.50
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,E  (1x)
Biol. Unit 2:  B,F  (1x)
Biol. Unit 3:  C,G  (1x)
Biol. Unit 4:  D,H  (1x)
Keywords :  Terminal Nucleotide Transferase, Transferase-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Yamashita, D. Takeshita, K. Tomita
Translocation And Rotation Of Trna During Template-Independent Rna Polymerization By Trna Nucleotidyltransferase
Structure V. 22 315 2014
PubMed-ID: 24389024  |  Reference-DOI: 10.1016/J.STR.2013.12.002

(-) Compounds

Molecule 1 - RNA (74-MER)
    Chains: A, B
    Engineered: YES
    Organism Scientific: THERMOTOGA MARITIMA MSB8
    Organism Taxid: 243274
    Synthetic: YES
 
Molecule 2 - RNA (75-MER)
    Chains: C, D
    Engineered: YES
    Organism Scientific: THERMOTOGA MARITIMA MSB8
    Organism Taxid: 243274
    Synthetic: YES
 
Molecule 3 - POLY A POLYMERASE
    Chains: E, F, G, H
    EC Number: 2.7.7.72
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PCNB2
    Organism Scientific: SYNTHETIC CONSTRUCT, AQUIFEX AEOLICUS (STRAIN VF5)
    Organism Taxid: 32630, 224324
    Strain: VF5

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): A   E   
Biological Unit 2 (1x):  B   F  
Biological Unit 3 (1x):   C   G 
Biological Unit 4 (1x):    D   H

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 168)

Asymmetric Unit (4, 168)
No.NameCountTypeFull Name
1CTP4Ligand/IonCYTIDINE-5'-TRIPHOSPHATE
2MG4Ligand/IonMAGNESIUM ION
3POP4Ligand/IonPYROPHOSPHATE 2-
4UNK156Mod. Amino Acid
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1CTP1Ligand/IonCYTIDINE-5'-TRIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
3POP1Ligand/IonPYROPHOSPHATE 2-
4UNK-1Mod. Amino Acid
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1CTP1Ligand/IonCYTIDINE-5'-TRIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
3POP1Ligand/IonPYROPHOSPHATE 2-
4UNK-1Mod. Amino Acid
Biological Unit 3 (2, 2)
No.NameCountTypeFull Name
1CTP1Ligand/IonCYTIDINE-5'-TRIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
3POP1Ligand/IonPYROPHOSPHATE 2-
4UNK-1Mod. Amino Acid
Biological Unit 4 (2, 2)
No.NameCountTypeFull Name
1CTP1Ligand/IonCYTIDINE-5'-TRIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
3POP1Ligand/IonPYROPHOSPHATE 2-
4UNK-1Mod. Amino Acid

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREA A:73 , GLY E:41 , GLY E:42 , ARG E:45 , ASP E:58 , ASP E:60 , ARG E:132 , ASP E:133 , ASN E:137 , ASP E:182 , ARG E:185 , ARG E:188 , ARG E:222 , LYS E:229 , MG E:603BINDING SITE FOR RESIDUE CTP E 601
02AC2SOFTWAREC A:74 , GLY E:42 , ARG E:45 , ASP E:58 , ASN E:137 , ARG E:188 , MG E:603BINDING SITE FOR RESIDUE POP E 602
03AC3SOFTWAREC A:74 , ASP E:58 , ASP E:60 , CTP E:601 , POP E:602BINDING SITE FOR RESIDUE MG E 603
04AC4SOFTWAREA B:73 , GLY F:42 , ARG F:45 , ASP F:58 , ASP F:60 , ARG F:132 , ASP F:133 , ASN F:137 , ASP F:182 , ARG F:185 , ARG F:188 , ARG F:222 , MG F:603BINDING SITE FOR RESIDUE CTP F 601
05AC5SOFTWAREC B:74 , GLY F:42 , ARG F:45 , ASP F:58 , ASP F:60 , ASN F:137 , ARG F:188 , LYS F:229 , MG F:603BINDING SITE FOR RESIDUE POP F 602
06AC6SOFTWAREC B:74 , ASP F:58 , ASP F:60 , CTP F:601 , POP F:602BINDING SITE FOR RESIDUE MG F 603
07AC7SOFTWAREC C:74 , GLY G:41 , GLY G:42 , ARG G:45 , ASP G:58 , ASP G:60 , ARG G:132 , ASP G:133 , ASN G:137 , ASP G:182 , VAL G:184 , ARG G:185 , ARG G:188 , ARG G:191 , MG G:603BINDING SITE FOR RESIDUE CTP G 601
08AC8SOFTWAREC C:75 , GLY G:42 , ARG G:45 , ASP G:58 , ASP G:60 , ARG G:188 , ARG G:191 , MG G:603BINDING SITE FOR RESIDUE POP G 602
09AC9SOFTWAREC C:75 , ASP G:58 , ASP G:60 , CTP G:601 , POP G:602BINDING SITE FOR RESIDUE MG G 603
10BC1SOFTWAREC D:74 , GLY H:41 , GLY H:42 , ARG H:45 , ASP H:58 , ASP H:60 , ARG H:132 , ASP H:133 , ASN H:137 , ASP H:182 , VAL H:184 , ARG H:185 , ARG H:188 , ARG H:191 , ARG H:222 , LYS H:229 , MG H:603BINDING SITE FOR RESIDUE CTP H 601
11BC2SOFTWAREC D:75 , GLY H:42 , ARG H:45 , ASP H:58 , ASN H:137 , ARG H:188 , ARG H:191 , MG H:603BINDING SITE FOR RESIDUE POP H 602
12BC3SOFTWAREC D:75 , ASP H:58 , ASP H:60 , CTP H:601 , POP H:602BINDING SITE FOR RESIDUE MG H 603

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3WFR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3WFR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3WFR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3WFR)

(-) Exons   (0, 0)

(no "Exon" information available for 3WFR)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:RNA  Length:74
                                                                                                          
                 3wfr A   1 GGCCAGGUAGCUCAGUUGGUAGAGCACUGGACUGAAAAUCCAGGUGUCGGCGGUUCGAUUCCGCCCCUGGCCAC  74
                                    10        20        30        40        50        60        70    


Chain B from PDB  Type:RNA  Length:74
                                                                                                          
                 3wfr B   1 GGCCAGGUAGCUCAGUUGGUAGAGCACUGGACUGAAAAUCCAGGUGUCGGCGGUUCGAUUCCGCCCCUGGCCAC  74
                                    10        20        30        40        50        60        70    


Chain C from PDB  Type:RNA  Length:75
                                                                                                           
                 3wfr C   1 GGCCAGGUAGCUCAGUUGGUAGAGCACUGGACUGAAAAUCCAGGUGUCGGCGGUUCGAUUCCGCCCCUGGCCACC  75
                                    10        20        30        40        50        60        70     


Chain D from PDB  Type:RNA  Length:75
                                                                                                           
                 3wfr D   1 GGCCAGGUAGCUCAGUUGGUAGAGCACUGGACUGAAAAUCCAGGUGUCGGCGGUUCGAUUCCGCCCCUGGCCACC  75
                                    10        20        30        40        50        60        70     


Chain E from PDB  Type:PROTEIN  Length:439
 aligned with O67911_AQUAE | O67911 from UniProtKB/TrEMBL  Length:512

    Alignment length:501
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504 
         O67911_AQUAE     5 EIVSSGKHTLHGLNFYLSYFDDVAKVLPREHYCFIVGGWVRDRILGEPVGYNIDVDFLTTADPVELAKNFAKRIGGHFFVFEKRGFLIKRPTIASVVLHLPPYRYRFDFSPLKGKDLEKALIEDLKERDFTANAIAVNLDDVLSIGAKQTIVYDPTGGIKDLEQGLLRPVSIENLKRDPVRVLRGFRIAIEKNLQLTEDFYEFVKEDPRIVLKSAVERITHELFKIMKEKTAHKVIRELYEYGVLEAIIPEIGRLREVKDQGEHHIYPLDEHTLKTLEYLEQVIEDRAKYLSAELLENFGKKRVLGEFTDVELLKWGALFHDIGKPQTFAVREGKVTFYEHDKVGAQIVREIGERLRWGDEATEFVAKLVRHHLRPFFLREAFKKGELKRRGMANFWRECGDIAPHLFLLSIADAMASGDEEEDIKALMETIAELESFNRNEMKEEIQKPLLNGDEIMEILGIKPGKIVGILKKALLEAQIDGKVETKEEAIEFIKRSTKN 505
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....--------......hhhhhhhhh.....eeeehhhhhhhhhh.....eeeeeeee..hhhhhhhhhhhhhh.eeeee.--------..eeeeeee....eeeeeeee....hhhhhhhhhhh....hhhh.eeehhhhh.-----..ee...hhhhhhhh.ee...hhhhhhhh.hhhhhhhhhhhhh..eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh...-------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhh..........-------..hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh...------------------------.hhhhhhhhhhhhhhh---.hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wfr E   5 xxxx--------LNFYLSYFDDVAKVLPREHYCFIVGGWVRDRILGEPVGYNIDVDFLTTADPVELAKNFAKRIGGHFFVFE--------PTIASVVLHLPPYRYRFDFSPLKGKDLEKALIEDLKERDFTANAIAVNLDDVLS-----TIVYDPTGGIKDLEQGLLRPVSIENLKRDPVRVLRGFRIAIEKNLQLTEDFYEFVKEDPRIVLKSAVERITHELFKIMKEKTAHKVIRELYEYGVLEAIIPEIGRLREVKD-------PLDEHTLKTLEYLEQVIEDRAKYLSAELLENFGKKRVLGEFTDVELLKWGALFHDIGKPQTFA-------FYEHDKVGAQIVREIGERLRWGDEATEFVAKLVRHHLRPFFLREAFKKGELKRRGMANFWRECGDIAPHLFLLSIADAMASGDEEEDIKALMETIAELESFNRNEMK------------------------xxxxxxxxxxxxxxxx---xxxxxxxxxxxxxx 505
                            ||||     -  |     24        34        44        54        64        74        84 |       -|      104       114       124       134       144   |   154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444   |     -         -       474|||||||484||||   494|||||||504|
                            ||||       17                                                                   86       95                                                  148   154                                                                                                           264     272                                                           334     342                                                                                                       448                      473-UNK||482-UNK||   494-UNK||503-UNK
                            5-UNK                                                                                                                                                                                                                                                                                                                                                                                                                                                                              474-UNK||483-UNK|   |495-UNK||504-UNK
                             6-UNK                                                                                                                                                                                                                                                                                                                                                                                                                                                                              475-UNK||484-UNK   ||496-UNK||505-UNK
                              7-UNK                                                                                                                                                                                                                                                                                                                                                                                                                                                                              476-UNK| 485-UNK  || 497-UNK|   
                               8-UNK                                                                                                                                                                                                                                                                                                                                                                                                                                                                              477-UNK  486-UNK ||  498-UNK   
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   478-UNK  487-UNK||   499-UNK  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    479-UNK  488-UNK|    500-UNK 
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     480-UNK     492-UNK  501-UNK
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      481-UNK     493-UNK  502-UNK


Chain F from PDB  Type:PROTEIN  Length:439
 aligned with O67911_AQUAE | O67911 from UniProtKB/TrEMBL  Length:512

    Alignment length:501
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504 
         O67911_AQUAE     5 EIVSSGKHTLHGLNFYLSYFDDVAKVLPREHYCFIVGGWVRDRILGEPVGYNIDVDFLTTADPVELAKNFAKRIGGHFFVFEKRGFLIKRPTIASVVLHLPPYRYRFDFSPLKGKDLEKALIEDLKERDFTANAIAVNLDDVLSIGAKQTIVYDPTGGIKDLEQGLLRPVSIENLKRDPVRVLRGFRIAIEKNLQLTEDFYEFVKEDPRIVLKSAVERITHELFKIMKEKTAHKVIRELYEYGVLEAIIPEIGRLREVKDQGEHHIYPLDEHTLKTLEYLEQVIEDRAKYLSAELLENFGKKRVLGEFTDVELLKWGALFHDIGKPQTFAVREGKVTFYEHDKVGAQIVREIGERLRWGDEATEFVAKLVRHHLRPFFLREAFKKGELKRRGMANFWRECGDIAPHLFLLSIADAMASGDEEEDIKALMETIAELESFNRNEMKEEIQKPLLNGDEIMEILGIKPGKIVGILKKALLEAQIDGKVETKEEAIEFIKRSTKN 505
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...---------......hhhhhhhhh.....eeeehhhhhhhhhh.....eeeeeeee..hhhhhhhhhhhhhh.eeeee.--------..eeeeeee....eeeeeeee....hhhhhhhhhhhh........eeehhhhh------.......hhhhhhh..ee...hhhhhhhh.hhhhhhhhhhhhh..eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh....-------.hhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhh..........-----....hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh...------------------------..hhhhhhhhhhhhhh---.hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wfr F   5 xxx---------LNFYLSYFDDVAKVLPREHYCFIVGGWVRDRILGEPVGYNIDVDFLTTADPVELAKNFAKRIGGHFFVFE--------PTIASVVLHLPPYRYRFDFSPLKGKDLEKALIEDLKERDFTANAIAVNLDDVL------TIVYDPTGGIKDLEQGLLRPVSIENLKRDPVRVLRGFRIAIEKNLQLTEDFYEFVKEDPRIVLKSAVERITHELFKIMKEKTAHKVIRELYEYGVLEAIIPEIGRLREVKD-------PLDEHTLKTLEYLEQVIEDRAKYLSAELLENFGKKRVLGEFTDVELLKWGALFHDIGKPQTFA-----VTFYEHDKVGAQIVREIGERLRWGDEATEFVAKLVRHHLRPFFLREAFKKGELKRRGMANFWRECGDIAPHLFLLSIADAMASGDEEEDIKALMETIAELESFNRNEMK------------------------xxxxxxxxxxxxxxxx---xxxxxxxxxxxxxx 505
                            |||      -  |     24        34        44        54        64        74        84 |       -|      104       114       124       134       144  |    154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334     | 344       354       364       374       384       394       404       414       424       434       444   |     -         -       474|||||||484||||   494|||||||504|
                            |||        17                                                                   86       95                                                 147    154                                                                                                           264     272                                                           334   340                                                                                                         448                      473-UNK||482-UNK||   494-UNK||503-UNK
                            5-UNK                                                                                                                                                                                                                                                                                                                                                                                                                                                                              474-UNK||483-UNK|   |495-UNK||504-UNK
                             6-UNK                                                                                                                                                                                                                                                                                                                                                                                                                                                                              475-UNK||484-UNK   ||496-UNK||505-UNK
                              7-UNK                                                                                                                                                                                                                                                                                                                                                                                                                                                                              476-UNK| 485-UNK  || 497-UNK|   
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  477-UNK  486-UNK ||  498-UNK   
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   478-UNK  487-UNK||   499-UNK  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    479-UNK  488-UNK|    500-UNK 
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     480-UNK     492-UNK  501-UNK
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      481-UNK     493-UNK  502-UNK


Chain G from PDB  Type:PROTEIN  Length:461
 aligned with O67911_AQUAE | O67911 from UniProtKB/TrEMBL  Length:512

    Alignment length:501
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504 
         O67911_AQUAE     5 EIVSSGKHTLHGLNFYLSYFDDVAKVLPREHYCFIVGGWVRDRILGEPVGYNIDVDFLTTADPVELAKNFAKRIGGHFFVFEKRGFLIKRPTIASVVLHLPPYRYRFDFSPLKGKDLEKALIEDLKERDFTANAIAVNLDDVLSIGAKQTIVYDPTGGIKDLEQGLLRPVSIENLKRDPVRVLRGFRIAIEKNLQLTEDFYEFVKEDPRIVLKSAVERITHELFKIMKEKTAHKVIRELYEYGVLEAIIPEIGRLREVKDQGEHHIYPLDEHTLKTLEYLEQVIEDRAKYLSAELLENFGKKRVLGEFTDVELLKWGALFHDIGKPQTFAVREGKVTFYEHDKVGAQIVREIGERLRWGDEATEFVAKLVRHHLRPFFLREAFKKGELKRRGMANFWRECGDIAPHLFLLSIADAMASGDEEEDIKALMETIAELESFNRNEMKEEIQKPLLNGDEIMEILGIKPGKIVGILKKALLEAQIDGKVETKEEAIEFIKRSTKN 505
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....--------....hhhhhhhhh.......eeeehhhhhhhhhh.....eeeeeeee..hhhhhhhhhhhhhh.eeee.............eeeeee....eeeeeeee....hhhhhhhhhhh.........eeehhhhhh.----..ee...hhhhhhhh.ee...hhhhhhhh.hhhhhhhhhhhhh..eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh..-------.hhhhhhhhhhhhhhhhhhhhhh.hhhhhhh..........hhhhhhhhhhhh..........------...hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.....----------.hhhhhhhh---.hhhhhhhhhhhhhhh--.hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wfr G   5 xxxx--------LNFYLSYFDDVAKVLPREHYCFIVGGWVRDRILGEPVGYNIDVDFLTTADPVELAKNFAKRIGGHFFVFEKRGFLIKRPTIASVVLHLPPYRYRFDFSPLKGKDLEKALIEDLKERDFTANAIAVNLDDVLSI----TIVYDPTGGIKDLEQGLLRPVSIENLKRDPVRVLRGFRIAIEKNLQLTEDFYEFVKEDPRIVLKSAVERITHELFKIMKEKTAHKVIRELYEYGVLEAIIPEIGRLREVKD-------PLDEHTLKTLEYLEQVIEDRAKYLSAELLENFGKKRVLGEFTDVELLKWGALFHDIGKPQTFA------TFYEHDKVGAQIVREIGERLRWGDEATEFVAKLVRHHLRPFFLREAFKKGELKRRGMANFWRECGDIAPHLFLLSIADAMASGDEEEDIKALMETIAELESFNRNEMKEE----------xxxxxxxxx---xxxxxxxxxxxxxxxx--xxxxxxxxxxxxxxx 505
                            ||||     -  |     24        34        44        54        64        74        84        94       104       114       124       134       144    |  154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334      |344       354       364       374       384       394       404       414       424       434       444     |   -      |464|||||  474|||||||484||||  |494|||||||504|
                            ||||       17                                                                                                                                 149  154                                                                                                           264     272                                                           334    341                                                                                                          450        461-UNK||||  474-UNK||483-UNK|  |494-UNK||503-UNK
                            5-UNK                                                                                                                                                                                                                                                                                                                                                                                                                                                                  462-UNK|||   475-UNK||484-UNK  ||495-UNK||504-UNK
                             6-UNK                                                                                                                                                                                                                                                                                                                                                                                                                                                                  463-UNK||   |476-UNK||485-UNK |||496-UNK||505-UNK
                              7-UNK                                                                                                                                                                                                                                                                                                                                                                                                                                                                  464-UNK|   | 477-UNK| 486-UNK||| 497-UNK|   
                               8-UNK                                                                                                                                                                                                                                                                                                                                                                                                                                                                  465-UNK   |  478-UNK  487-UNK||  498-UNK   
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       466-UNK  |   479-UNK  488-UNK|   499-UNK  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        467-UNK |    480-UNK    491-UNK  500-UNK 
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         468-UNK|     481-UNK    492-UNK  501-UNK
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          469-UNK      482-UNK    493-UNK  502-UNK


Chain H from PDB  Type:PROTEIN  Length:463
 aligned with O67911_AQUAE | O67911 from UniProtKB/TrEMBL  Length:512

    Alignment length:501
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504 
         O67911_AQUAE     5 EIVSSGKHTLHGLNFYLSYFDDVAKVLPREHYCFIVGGWVRDRILGEPVGYNIDVDFLTTADPVELAKNFAKRIGGHFFVFEKRGFLIKRPTIASVVLHLPPYRYRFDFSPLKGKDLEKALIEDLKERDFTANAIAVNLDDVLSIGAKQTIVYDPTGGIKDLEQGLLRPVSIENLKRDPVRVLRGFRIAIEKNLQLTEDFYEFVKEDPRIVLKSAVERITHELFKIMKEKTAHKVIRELYEYGVLEAIIPEIGRLREVKDQGEHHIYPLDEHTLKTLEYLEQVIEDRAKYLSAELLENFGKKRVLGEFTDVELLKWGALFHDIGKPQTFAVREGKVTFYEHDKVGAQIVREIGERLRWGDEATEFVAKLVRHHLRPFFLREAFKKGELKRRGMANFWRECGDIAPHLFLLSIADAMASGDEEEDIKALMETIAELESFNRNEMKEEIQKPLLNGDEIMEILGIKPGKIVGILKKALLEAQIDGKVETKEEAIEFIKRSTKN 505
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...---------.....hhhhhhhhhh.....eeeehhhhhhhhhh.....eeeeeeee..hhhhhhhhhhhhhh.ee..ee.........eeeeeeee....eeeeeeee....hhhhhhhhhhh...hhhhh.eeehhhhh.-----.......hhhhhhhh.ee...hhhhhhhh.hhhhhhhhhhhhh..eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh...-------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhh..........-------..hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.hhhhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhhh-------.hhhhhhhh-...hhhhhhhhhhhhh..--.hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wfr H   5 xxx---------LNFYLSYFDDVAKVLPREHYCFIVGGWVRDRILGEPVGYNIDVDFLTTADPVELAKNFAKRIGGHFFVFEKRGFLIKRPTIASVVLHLPPYRYRFDFSPLKGKDLEKALIEDLKERDFTANAIAVNLDDVLS-----TIVYDPTGGIKDLEQGLLRPVSIENLKRDPVRVLRGFRIAIEKNLQLTEDFYEFVKEDPRIVLKSAVERITHELFKIMKEKTAHKVIRELYEYGVLEAIIPEIGRLREVKD-------PLDEHTLKTLEYLEQVIEDRAKYLSAELLENFGKKRVLGEFTDVELLKWGALFHDIGKPQTFA-------FYEHDKVGAQIVREIGERLRWGDEATEFVAKLVRHHLRPFFLREAFKKGELKRRGMANFWRECGDIAPHLFLLSIADAMASGDEEEDIKALMETIAELESFNRNEMKEEIQK-------xxxxxxxxx-xxxxxxxxxxxxxxxxxx--xxxxxxxxxxxxxxx 505
                            |||      -  |     24        34        44        54        64        74        84        94       104       114       124       134       144   |   154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444        |-      |464||||| |474|||||||484||||  |494|||||||504|
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3WFR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3WFR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3WFR)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain E,F,G,H   (O67911_AQUAE | O67911)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016779    nucleotidyltransferase activity    Catalysis of the transfer of a nucleotidyl group to a reactant.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0006396    RNA processing    Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.

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  3wfr
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  O67911_AQUAE | O67911
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  2.7.7.72
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        O67911_AQUAE | O67911: 3wfo 3wfp 3wfq 3wfs

(-) Related Entries Specified in the PDB File

3wfo 3wfp 3wfq 3wfs