Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Biological Unit 1
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)

(-) Description

Title :  TRNA PROCESSING ENZYME COMPLEX 1
 
Authors :  S. Yamashita, D. Takeshita, K. Tomita
Date :  23 Jul 13  (Deposition) - 01 Jan 14  (Release) - 28 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.62
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,E  (1x)
Biol. Unit 2:  B,F  (1x)
Biol. Unit 3:  C,G  (1x)
Biol. Unit 4:  D,H  (1x)
Keywords :  Terminal Nucleotide Transferase, Transferase-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Yamashita, D. Takeshita, K. Tomita
Translocation And Rotation Of Trna During Template-Independent Rna Polymerization By Trna Nucleotidyltransferase
Structure V. 22 315 2014
PubMed-ID: 24389024  |  Reference-DOI: 10.1016/J.STR.2013.12.002

(-) Compounds

Molecule 1 - RNA (73-MER)
    Chains: A, B, C, D
    Engineered: YES
    Organism Scientific: THERMOTOGA MARITIMA MSB8
    Organism Taxid: 243274
    Synthetic: YES
 
Molecule 2 - POLY A POLYMERASE
    Chains: E, F, G, H
    EC Number: 2.7.7.72
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PCNB2
    Organism Scientific: SYNTHETIC CONSTRUCT, AQUIFEX AEOLICUS (STRAIN VF5)
    Organism Taxid: 32630, 224324
    Strain: VF5

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): A   E   
Biological Unit 2 (1x):  B   F  
Biological Unit 3 (1x):   C   G 
Biological Unit 4 (1x):    D   H

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 135)

Asymmetric Unit (1, 135)
No.NameCountTypeFull Name
1UNK135Mod. Amino Acid
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1UNK-1Mod. Amino Acid
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1UNK-1Mod. Amino Acid
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1UNK-1Mod. Amino Acid
Biological Unit 4 (0, 0)
No.NameCountTypeFull Name
1UNK-1Mod. Amino Acid

(-) Sites  (0, 0)

(no "Site" information available for 3WFQ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3WFQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3WFQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3WFQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3WFQ)

(-) Exons   (0, 0)

(no "Exon" information available for 3WFQ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:RNA  Length:73
                                                                                                         
                 3wfq A   1 GGCCAGGUAGCUCAGUUGGUAGAGCACUGGACUGAAAAUCCAGGUGUCGGCGGUUCGAUUCCGCCCCUGGCCA  73
                                    10        20        30        40        50        60        70   


Chain B from PDB  Type:RNA  Length:73
                                                                                                         
                 3wfq B   1 GGCCAGGUAGCUCAGUUGGUAGAGCACUGGACUGAAAAUCCAGGUGUCGGCGGUUCGAUUCCGCCCCUGGCCA  73
                                    10        20        30        40        50        60        70   


Chain C from PDB  Type:RNA  Length:73
                                                                                                         
                 3wfq C   1 GGCCAGGUAGCUCAGUUGGUAGAGCACUGGACUGAAAAUCCAGGUGUCGGCGGUUCGAUUCCGCCCCUGGCCA  73
                                    10        20        30        40        50        60        70   


Chain D from PDB  Type:RNA  Length:73
                                                                                                         
                 3wfq D   1 GGCCAGGUAGCUCAGUUGGUAGAGCACUGGACUGAAAAUCCAGGUGUCGGCGGUUCGAUUCCGCCCCUGGCCA  73
                                    10        20        30        40        50        60        70   


Chain E from PDB  Type:PROTEIN  Length:439
 aligned with O67911_AQUAE | O67911 from UniProtKB/TrEMBL  Length:512

    Alignment length:500
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504
         O67911_AQUAE     5 EIVSSGKHTLHGLNFYLSYFDDVAKVLPREHYCFIVGGWVRDRILGEPVGYNIDVDFLTTADPVELAKNFAKRIGGHFFVFEKRGFLIKRPTIASVVLHLPPYRYRFDFSPLKGKDLEKALIEDLKERDFTANAIAVNLDDVLSIGAKQTIVYDPTGGIKDLEQGLLRPVSIENLKRDPVRVLRGFRIAIEKNLQLTEDFYEFVKEDPRIVLKSAVERITHELFKIMKEKTAHKVIRELYEYGVLEAIIPEIGRLREVKDQGEHHIYPLDEHTLKTLEYLEQVIEDRAKYLSAELLENFGKKRVLGEFTDVELLKWGALFHDIGKPQTFAVREGKVTFYEHDKVGAQIVREIGERLRWGDEATEFVAKLVRHHLRPFFLREAFKKGELKRRGMANFWRECGDIAPHLFLLSIADAMASGDEEEDIKALMETIAELESFNRNEMKEEIQKPLLNGDEIMEILGIKPGKIVGILKKALLEAQIDGKVETKEEAIEFIKRSTK 504
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...--------.......hhhhhhhhh.....eeeehhhhhhhhhh.....eeeeeeee..hhhhhhhhhhhhhh.eeeee.--------..eeeeeee....eeeeeeee....hhhhhhhhhhh..........eehhhhh------.......hhhhhhhhhee...hhhhhhhh.hhhhhhhhhhhhh..eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh..-------.hhhhhhhhhhhhhhhhhhhhhh.hhhhhh.....ee...eehhhhhhhhhhh..........-------..hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh...-----------------------.hhhhhhhhhhhhhhhh--.hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wfq E   5 xxx--------GLNFYLSYFDDVAKVLPREHYCFIVGGWVRDRILGEPVGYNIDVDFLTTADPVELAKNFAKRIGGHFFVFE--------PTIASVVLHLPPYRYRFDFSPLKGKDLEKALIEDLKERDFTANAIAVNLDDVL------TIVYDPTGGIKDLEQGLLRPVSIENLKRDPVRVLRGFRIAIEKNLQLTEDFYEFVKEDPRIVLKSAVERITHELFKIMKEKTAHKVIRELYEYGVLEAIIPEIGRLREVKD-------PLDEHTLKTLEYLEQVIEDRAKYLSAELLENFGKKRVLGEFTDVELLKWGALFHDIGKPQTFA-------FYEHDKVGAQIVREIGERLRWGDEATEFVAKLVRHHLRPFFLREAFKKGELKRRGMANFWRECGDIAPHLFLLSIADAMASGDEEEDIKALMETIAELESFNRNEMK-----------------------xxxxxxxxxxxxxxxxx--xxxxxxxxxxxxxx 504
                            |||      - |      24        34        44        54        64        74        84 |       -|      104       114       124       134       144  |    154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444   |     -         -       474|||||||484||||  |494|||||||504
                            |||       16                                                                    86       95                                                 147    154                                                                                                           264     272                                                           334     342                                                                                                       448                     472-UNK||481-UNK||| 492-UNK||501-UNK
                            5-UNK                                                                                                                                                                                                                                                                                                                                                                                                                                                                             473-UNK||482-UNK||  493-UNK||502-UNK
                             6-UNK                                                                                                                                                                                                                                                                                                                                                                                                                                                                             474-UNK||483-UNK|  |494-UNK||503-UNK
                              7-UNK                                                                                                                                                                                                                                                                                                                                                                                                                                                                             475-UNK| 484-UNK  | 495-UNK| 504-UNK
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 476-UNK  485-UNK |  496-UNK    
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  477-UNK  486-UNK|   497-UNK   
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   478-UNK  487-UNK    498-UNK  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    479-UNK  488-UNK    499-UNK 
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     480-UNK    491-UNK  500-UNK


Chain F from PDB  Type:PROTEIN  Length:436
 aligned with O67911_AQUAE | O67911 from UniProtKB/TrEMBL  Length:512

    Alignment length:500
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504
         O67911_AQUAE     5 EIVSSGKHTLHGLNFYLSYFDDVAKVLPREHYCFIVGGWVRDRILGEPVGYNIDVDFLTTADPVELAKNFAKRIGGHFFVFEKRGFLIKRPTIASVVLHLPPYRYRFDFSPLKGKDLEKALIEDLKERDFTANAIAVNLDDVLSIGAKQTIVYDPTGGIKDLEQGLLRPVSIENLKRDPVRVLRGFRIAIEKNLQLTEDFYEFVKEDPRIVLKSAVERITHELFKIMKEKTAHKVIRELYEYGVLEAIIPEIGRLREVKDQGEHHIYPLDEHTLKTLEYLEQVIEDRAKYLSAELLENFGKKRVLGEFTDVELLKWGALFHDIGKPQTFAVREGKVTFYEHDKVGAQIVREIGERLRWGDEATEFVAKLVRHHLRPFFLREAFKKGELKRRGMANFWRECGDIAPHLFLLSIADAMASGDEEEDIKALMETIAELESFNRNEMKEEIQKPLLNGDEIMEILGIKPGKIVGILKKALLEAQIDGKVETKEEAIEFIKRSTK 504
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...---------......hhhhhhhhh.....eeeehhhhhhhhh......eeeeeeee..hhhhhhhhhhhhh..eeeee.--------..eeeeeee....eeeeeeee....hhhhhhhhhhhh..hhhhh.eeehhhhh------..ee...hhhhhhhhhee...hhhhhhhh.hhhhhhhhhhhhh..eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh..-------.hhhhhhhhhhhhhhhhhhhhhh.hhhhhh...........hhhhhhhhhhhh..........-------..hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhhh....hhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.-------------------------.hhhhhhhhhhhhh.--.hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wfq F   5 xxx---------LNFYLSYFDDVAKVLPREHYCFIVGGWVRDRILGEPVGYNIDVDFLTTADPVELAKNFAKRIGGHFFVFE--------PTIASVVLHLPPYRYRFDFSPLKGKDLEKALIEDLKERDFTANAIAVNLDDVL------TIVYDPTGGIKDLEQGLLRPVSIENLKRDPVRVLRGFRIAIEKNLQLTEDFYEFVKEDPRIVLKSAVERITHELFKIMKEKTAHKVIRELYEYGVLEAIIPEIGRLREVKD-------PLDEHTLKTLEYLEQVIEDRAKYLSAELLENFGKKRVLGEFTDVELLKWGALFHDIGKPQTFA-------FYEHDKVGAQIVREIGERLRWGDEATEFVAKLVRHHLRPFFLREAFKKGELKRRGMANFWRECGDIAPHLFLLSIADAMASGDEEEDIKALMETIAELESFNRNEMK-------------------------xxxxxxxxxxxxxxx--xxxxxxxxxxxxxx 504
                            |||      -  |     24        34        44        54        64        74        84 |       -|      104       114       124       134       144  |    154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444   |     -         -       474|||||||484||||  |494|||||||504
                            |||        17                                                                   86       95                                                 147    154                                                                                                           264     272                                                           334     342                                                                                                       448                       474-UNK||483-UNK|  |494-UNK||503-UNK
                            5-UNK                                                                                                                                                                                                                                                                                                                                                                                                                                                                               475-UNK||484-UNK  ||495-UNK||504-UNK
                             6-UNK                                                                                                                                                                                                                                                                                                                                                                                                                                                                               476-UNK||485-UNK |||496-UNK||  
                              7-UNK                                                                                                                                                                                                                                                                                                                                                                                                                                                                               477-UNK| 486-UNK||| 497-UNK|  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   478-UNK  487-UNK||  498-UNK  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    479-UNK  488-UNK|   499-UNK 
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     480-UNK    491-UNK  500-UNK
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      481-UNK    492-UNK  501-UNK
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       482-UNK    493-UNK  502-UNK


Chain G from PDB  Type:PROTEIN  Length:439
 aligned with O67911_AQUAE | O67911 from UniProtKB/TrEMBL  Length:512

    Alignment length:500
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504
         O67911_AQUAE     5 EIVSSGKHTLHGLNFYLSYFDDVAKVLPREHYCFIVGGWVRDRILGEPVGYNIDVDFLTTADPVELAKNFAKRIGGHFFVFEKRGFLIKRPTIASVVLHLPPYRYRFDFSPLKGKDLEKALIEDLKERDFTANAIAVNLDDVLSIGAKQTIVYDPTGGIKDLEQGLLRPVSIENLKRDPVRVLRGFRIAIEKNLQLTEDFYEFVKEDPRIVLKSAVERITHELFKIMKEKTAHKVIRELYEYGVLEAIIPEIGRLREVKDQGEHHIYPLDEHTLKTLEYLEQVIEDRAKYLSAELLENFGKKRVLGEFTDVELLKWGALFHDIGKPQTFAVREGKVTFYEHDKVGAQIVREIGERLRWGDEATEFVAKLVRHHLRPFFLREAFKKGELKRRGMANFWRECGDIAPHLFLLSIADAMASGDEEEDIKALMETIAELESFNRNEMKEEIQKPLLNGDEIMEILGIKPGKIVGILKKALLEAQIDGKVETKEEAIEFIKRSTK 504
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...---------......hhhhhhhhh.....eeeehhhhhhhhhh.....eeeeeeee..hhhhhhhhhhhhhh.eeeee.--------..eeeeeee....eeeeeeee....hhhhhhhhhhh...hhhhh.eeehhhhh.-----..ee...hhhhhhhh.ee...hhhhhhhh.hhhhhhhhhhhhh..eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh......-------.hhhhhhhhhhhhhhhhhh.....hhhhhhh..........hhhhhhhhhhhh..........-------..hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh...-----------------------..hhhhhhhhhhhhhhh--.hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wfq G   5 xxx---------LNFYLSYFDDVAKVLPREHYCFIVGGWVRDRILGEPVGYNIDVDFLTTADPVELAKNFAKRIGGHFFVFE--------PTIASVVLHLPPYRYRFDFSPLKGKDLEKALIEDLKERDFTANAIAVNLDDVLS-----TIVYDPTGGIKDLEQGLLRPVSIENLKRDPVRVLRGFRIAIEKNLQLTEDFYEFVKEDPRIVLKSAVERITHELFKIMKEKTAHKVIRELYEYGVLEAIIPEIGRLREVKD-------PLDEHTLKTLEYLEQVIEDRAKYLSAELLENFGKKRVLGEFTDVELLKWGALFHDIGKPQTFA-------FYEHDKVGAQIVREIGERLRWGDEATEFVAKLVRHHLRPFFLREAFKKGELKRRGMANFWRECGDIAPHLFLLSIADAMASGDEEEDIKALMETIAELESFNRNEMK-----------------------xxxxxxxxxxxxxxxxx--xxxxxxxxxxxxxx 504
                            |||      -  |     24        34        44        54        64        74        84 |       -|      104       114       124       134       144   |   154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444   |     -         -       474|||||||484||||  |494|||||||504
                            |||        17                                                                   86       95                                                  148   154                                                                                                           264     272                                                           334     342                                                                                                       448                     472-UNK||481-UNK||| 492-UNK||501-UNK
                            5-UNK                                                                                                                                                                                                                                                                                                                                                                                                                                                                             473-UNK||482-UNK||  493-UNK||502-UNK
                             6-UNK                                                                                                                                                                                                                                                                                                                                                                                                                                                                             474-UNK||483-UNK|  |494-UNK||503-UNK
                              7-UNK                                                                                                                                                                                                                                                                                                                                                                                                                                                                             475-UNK| 484-UNK  | 495-UNK| 504-UNK
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 476-UNK  485-UNK |  496-UNK    
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  477-UNK  486-UNK|   497-UNK   
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   478-UNK  487-UNK    498-UNK  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    479-UNK  488-UNK    499-UNK 
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     480-UNK    491-UNK  500-UNK


Chain H from PDB  Type:PROTEIN  Length:441
 aligned with O67911_AQUAE | O67911 from UniProtKB/TrEMBL  Length:512

    Alignment length:500
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504
         O67911_AQUAE     5 EIVSSGKHTLHGLNFYLSYFDDVAKVLPREHYCFIVGGWVRDRILGEPVGYNIDVDFLTTADPVELAKNFAKRIGGHFFVFEKRGFLIKRPTIASVVLHLPPYRYRFDFSPLKGKDLEKALIEDLKERDFTANAIAVNLDDVLSIGAKQTIVYDPTGGIKDLEQGLLRPVSIENLKRDPVRVLRGFRIAIEKNLQLTEDFYEFVKEDPRIVLKSAVERITHELFKIMKEKTAHKVIRELYEYGVLEAIIPEIGRLREVKDQGEHHIYPLDEHTLKTLEYLEQVIEDRAKYLSAELLENFGKKRVLGEFTDVELLKWGALFHDIGKPQTFAVREGKVTFYEHDKVGAQIVREIGERLRWGDEATEFVAKLVRHHLRPFFLREAFKKGELKRRGMANFWRECGDIAPHLFLLSIADAMASGDEEEDIKALMETIAELESFNRNEMKEEIQKPLLNGDEIMEILGIKPGKIVGILKKALLEAQIDGKVETKEEAIEFIKRSTK 504
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....-------.......hhhhhhh.......eeeehhhhhhhhhh.....eeeeeeee..hhhhhhhhhhhhhh.eeeee.--------..eeeeeee....eeeeeeee....hhhhhhhhhhhh..hhhhh.eeehhhhh-----...ee...hhhhhhhhhee...hhhhhhhh.hhhhhhhhhhhhh..eehhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh......-------.hhhhhhhhhhhhhhhhhhhhhh.hhhhhh...........hhhhhhhhhhhh..........-------..hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh...----------------------.hhhhhhhhhhhhhhhh---.hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wfq H   5 xxxx-------GLNFYLSYFDDVAKVLPREHYCFIVGGWVRDRILGEPVGYNIDVDFLTTADPVELAKNFAKRIGGHFFVFE--------PTIASVVLHLPPYRYRFDFSPLKGKDLEKALIEDLKERDFTANAIAVNLDDVL-----QTIVYDPTGGIKDLEQGLLRPVSIENLKRDPVRVLRGFRIAIEKNLQLTEDFYEFVKEDPRIVLKSAVERITHELFKIMKEKTAHKVIRELYEYGVLEAIIPEIGRLREVKD-------PLDEHTLKTLEYLEQVIEDRAKYLSAELLENFGKKRVLGEFTDVELLKWGALFHDIGKPQTFA-------FYEHDKVGAQIVREIGERLRWGDEATEFVAKLVRHHLRPFFLREAFKKGELKRRGMANFWRECGDIAPHLFLLSIADAMASGDEEEDIKALMETIAELESFNRNEMK----------------------xxxxxxxxxxxxxxxxx---xxxxxxxxxxxxxx 504
                            ||||     - |      24        34        44        54        64        74        84 |       -|      104       114       124       134       144  |    154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444   |     -         -      |474|||||||484|||   |494|||||||504
                            ||||      16                                                                    86       95                                                 147   153                                                                                                            264     272                                                           334     342                                                                                                       448                    471-UNK||480-UNK|||  492-UNK||501-UNK
                            5-UNK                                                                                                                                                                                                                                                                                                                                                                                                                                                                            472-UNK||481-UNK||   493-UNK||502-UNK
                             6-UNK                                                                                                                                                                                                                                                                                                                                                                                                                                                                            473-UNK||482-UNK|   |494-UNK||503-UNK
                              7-UNK                                                                                                                                                                                                                                                                                                                                                                                                                                                                            474-UNK| 483-UNK   | 495-UNK| 504-UNK
                               8-UNK                                                                                                                                                                                                                                                                                                                                                                                                                                                                            475-UNK  484-UNK  |  496-UNK    
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 476-UNK  485-UNK |   497-UNK   
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  477-UNK  486-UNK|    498-UNK  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   478-UNK  487-UNK     499-UNK 
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    479-UNK     491-UNK  500-UNK
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3WFQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3WFQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3WFQ)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain E,F,G,H   (O67911_AQUAE | O67911)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016779    nucleotidyltransferase activity    Catalysis of the transfer of a nucleotidyl group to a reactant.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0006396    RNA processing    Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    UNK  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
(no "Sites" information available for 3wfq)
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3wfq)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Biol. Unit 1 PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format | Biol. Unit 4 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3wfq
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  O67911_AQUAE | O67911
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  2.7.7.72
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  O67911_AQUAE | O67911
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        O67911_AQUAE | O67911: 3wfo 3wfp 3wfr 3wfs

(-) Related Entries Specified in the PDB File

3wfo 3wfp 3wfr 3wfs