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(-) Description

Title :  CRYSTAL STRUCTURE OF AUTOTAXIN IN COMPLEX WITH 2BOA
 
Authors :  H. Nishimasu, R. Ishitani, O. Nureki
Date :  09 May 13  (Deposition) - 31 Jul 13  (Release) - 16 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Kawaguchi, T. Okabe, S. Okudaira, H. Nishimasu, R. Ishitani, H. Kojima, O. Nureki, J. Aoki, T. Nagano
Screening And X-Ray Crystal Structure-Based Optimization Of Autotaxin (Enpp2) Inhibitors, Using A Newly Developed Fluorescence Probe
Acs Chem. Biol. V. 8 1713 2013
PubMed-ID: 23688339  |  Reference-DOI: 10.1021/CB400150C

(-) Compounds

Molecule 1 - ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE FAMILY MEMBER 2
    Chains: A
    EC Number: 3.1.4.39
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK293S GNT1-
    Expression System Common: HUMAN
    Expression System Plasmid: PCD-CW
    Expression System Taxid: 9606
    Expression System Vector Type: PLASMID
    Gene: ENPP2
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: ATX, E-NPP 2, AUTOTAXIN, EXTRACELLULAR LYSOPHOSPHOLIPASE D, LYSOPLD

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (11, 37)

Asymmetric/Biological Unit (11, 37)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2CA1Ligand/IonCALCIUM ION
3DWW1Ligand/Ion[2-({4-[(5Z)-5-(3,4-DICHLOROBENZYLIDENE)-4-OXO-4,5-DIHYDRO-1,3-THIAZOL-2-YL]PIPERAZIN-1-YL}METHYL)PHENYL]BORONIC ACID
4EDO16Ligand/Ion1,2-ETHANEDIOL
5K1Ligand/IonPOTASSIUM ION
6MAN4Ligand/IonALPHA-D-MANNOSE
7NA1Ligand/IonSODIUM ION
8NAG6Ligand/IonN-ACETYL-D-GLUCOSAMINE
9SCN3Ligand/IonTHIOCYANATE ION
10SO41Ligand/IonSULFATE ION
11ZN2Ligand/IonZINC ION

(-) Sites  (29, 29)

Asymmetric Unit (29, 29)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:171 , THR A:209 , ASP A:358 , HIS A:359BINDING SITE FOR RESIDUE ZN A 912
02AC2SOFTWAREASP A:311 , HIS A:315 , HIS A:474 , SO4 A:917BINDING SITE FOR RESIDUE ZN A 913
03AC3SOFTWAREASP A:735 , ASN A:737 , ASN A:739 , LEU A:741 , ASP A:743 , HOH A:1327BINDING SITE FOR RESIDUE CA A 914
04AC4SOFTWAREASN A:797 , SER A:800 , SER A:803 , HOH A:1369 , HOH A:1370 , HOH A:1371BINDING SITE FOR RESIDUE NA A 915
05AC5SOFTWARETYR A:665 , ASP A:668 , MET A:671 , HOH A:1372 , HOH A:1373BINDING SITE FOR RESIDUE K A 916
06AC6SOFTWARETHR A:209 , ASN A:230 , LEU A:243 , ASP A:311 , HIS A:474 , ZN A:913 , HOH A:1265BINDING SITE FOR RESIDUE SO4 A 917
07AC7SOFTWARETHR A:761BINDING SITE FOR RESIDUE SCN A 918
08AC8SOFTWAREARG A:393BINDING SITE FOR RESIDUE SCN A 919
09AC9SOFTWAREGLY A:229 , ARG A:391BINDING SITE FOR RESIDUE SCN A 920
10BC1SOFTWAREARG A:823 , GLU A:826 , ASP A:832 , TYR A:841 , LYS A:848BINDING SITE FOR RESIDUE EDO A 921
11BC2SOFTWAREILE A:151 , CYS A:194 , GLY A:491 , LYS A:495 , TYR A:496 , ARG A:535 , HOH A:1020BINDING SITE FOR RESIDUE EDO A 922
12BC3SOFTWAREGLY A:674 , PHE A:675 , PRO A:678 , PRO A:679 , TYR A:680 , TRP A:708 , GLN A:712BINDING SITE FOR RESIDUE EDO A 923
13BC4SOFTWARETYR A:601 , PHE A:621 , PHE A:734 , ARG A:742 , ASP A:743 , HOH A:1004 , HOH A:1068BINDING SITE FOR RESIDUE EDO A 924
14BC5SOFTWAREARG A:192 , HIS A:197 , LYS A:499BINDING SITE FOR RESIDUE EDO A 925
15BC6SOFTWARETYR A:701 , TYR A:736 , GLN A:750 , VAL A:759 , PRO A:760 , HIS A:793BINDING SITE FOR RESIDUE EDO A 926
16BC7SOFTWARELEU A:446 , VAL A:447 , GLU A:448 , HOH A:1035 , HOH A:1231 , HOH A:1296BINDING SITE FOR RESIDUE EDO A 927
17BC8SOFTWAREILE A:392 , ARG A:393 , TYR A:402 , GLU A:441 , ASP A:442 , LEU A:443BINDING SITE FOR RESIDUE EDO A 928
18BC9SOFTWAREPRO A:520 , ALA A:521 , ASN A:523 , HOH A:1135 , HOH A:1245 , HOH A:1350BINDING SITE FOR RESIDUE EDO A 929
19CC1SOFTWAREILE A:620 , PHE A:621 , GLU A:745 , TYR A:751 , SER A:756 , PRO A:758BINDING SITE FOR RESIDUE EDO A 930
20CC2SOFTWARESER A:785 , VAL A:786 , TYR A:850 , HOH A:1233BINDING SITE FOR RESIDUE EDO A 931
21CC3SOFTWAREARG A:742 , GLY A:830BINDING SITE FOR RESIDUE EDO A 932
22CC4SOFTWAREASN A:374 , LYS A:415BINDING SITE FOR RESIDUE EDO A 933
23CC5SOFTWAREPHE A:704 , PRO A:792 , ARG A:794 , ASP A:796 , ASN A:797 , HOH A:1032BINDING SITE FOR RESIDUE EDO A 934
24CC6SOFTWAREGLU A:799 , LEU A:814 , HOH A:1035 , HOH A:1109 , HOH A:1264BINDING SITE FOR RESIDUE EDO A 935
25CC7SOFTWAREGLY A:226 , ASN A:437 , ARG A:438 , ARG A:439 , MAN A:907 , HOH A:1173BINDING SITE FOR RESIDUE EDO A 936
26CC8SOFTWARESER A:169 , PHE A:210 , LEU A:213 , LEU A:243 , PHE A:273 , PHE A:274 , TRP A:275 , TYR A:306BINDING SITE FOR RESIDUE DWW A 937
27CC9SOFTWAREASN A:53BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 53 RESIDUES 901 TO 902
28DC1SOFTWARELEU A:376 , THR A:377 , ASN A:410 , HOH A:1187 , HOH A:1339BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 410 RESIDUES 910 TO 911
29DC2SOFTWARELEU A:220 , GLU A:223 , SER A:224 , GLY A:255 , ASN A:436 , ASN A:437 , PRO A:522 , ASN A:524 , LEU A:741 , HIS A:827 , EDO A:936 , HOH A:1015 , HOH A:1028 , HOH A:1038 , HOH A:1056 , HOH A:1065 , HOH A:1088 , HOH A:1149 , HOH A:1160 , HOH A:1173 , HOH A:1260 , HOH A:1268 , HOH A:1298BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 524 RESIDUES 903 TO 909

(-) SS Bonds  (15, 15)

Asymmetric/Biological Unit
No.Residues
1A:58 -A:75
2A:62 -A:93
3A:73 -A:86
4A:79 -A:85
5A:102 -A:119
6A:107 -A:137
7A:117 -A:130
8A:123 -A:129
9A:148 -A:194
10A:156 -A:350
11A:366 -A:468
12A:413 -A:801
13A:566 -A:662
14A:568 -A:647
15A:770 -A:780

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Pro A:70 -Pro A:71
2Tyr A:205 -Pro A:206
3Gln A:309 -Pro A:310

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3WAW)

(-) PROSITE Motifs  (2, 4)

Asymmetric/Biological Unit (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SMB_2PS50958 Somatomedin B (SMB) domain profile.ENPP2_MOUSE54-97
98-142		  2A:54-97
A:98-142
2SMB_1PS00524 Somatomedin B domain (SMB) signature.ENPP2_MOUSE73-93
117-137		  2A:73-93
A:117-137

(-) Exons   (0, 0)

(no "Exon" information available for 3WAW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:779
 aligned with ENPP2_MOUSE | Q9R1E6 from UniProtKB/Swiss-Prot  Length:862

    Alignment length:809
                                    60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850         
          ENPP2_MOUSE    51 WTNTSGSCKGRCFELQEVGPPDCRCDNLCKSYSSCCHDFDELCLKTARGWECTKDRCGEVRNEENACHCSEDCLSRGDCCTNYQVVCKGESHWVDDDCEEIRVPECPAGFVRPPLIIFSVDGFRASYMKKGSKVMPNIEKLRSCGTHAPYMRPVYPTKTFPNLYTLATGLYPESHGIVGNSMYDPVFDATFHLRGREKFNHRWWGGQPLWITATKQGVRAGTFFWSVSIPHERRILTILQWLSLPDNERPSVYAFYSEQPDFSGHKYGPFGPEMTNPLREIDKTVGQLMDGLKQLKLHRCVNVIFVGDHGMEDVTCDRTEFLSNYLTNVDDITLVPGTLGRIRPKIPNNLKYDPKAIIANLTCKKPDQHFKPYMKQHLPKRLHYANNRRIEDLHLLVERRWHVARKPLDVYKKPSGKCFFQGDHGFDNKVNSMQTVFVGYGPTFKYRTKVPPFENIELYNVMCDLLGLKPAPNNGTHGSLNHLLRTNTFRPTLPEEVSRPNYPGIMYLQSDFDLGCTCDDKVEPKNKLEELNKRLHTKGSTEERHLLYGRPAVLYRTSYDILYHTDFESGYSEIFLMPLWTSYTISKQAEVSSIPEHLTNCVRPDVRVSPGFSQNCLAYKNDKQMSYGFLFPPYLSSSPEAKYDAFLVTNMVPMYPAFKRVWTYFQRVLVKKYASERNGVNVISGPIFDYNYNGLRDIEDEIKQYVEGSSIPVPTHYYSIITSCLDFTQPADKCDGPLSVSSFILPHRPDNDESCNSSEDESKWVEELMKMHTARVRDIEHLTGLDFYRKTSRSYSEILTLKTYLHTYE 859
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............................hhhhh....hhhhhhh........hhhhh..............hhhhhh....hhhhhhhh..hhhhh..................eeeeeee..hhhhhhhhhhhhhhhhhhhhhhee...ee.....hhhhhhhhhhhh.hhhhhh.....eee....eee....hhhhhhhhh...hhhhhhhhh.............hhhhhhhhhhhhhh........eeeeeeeeehhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh......eeeeee....ee.....eee.hhh..hhh.eeee...eeeeee........hhhhhhhhhh.......eeeee.hhhhhhhh.........eeeee....eee...----------....ee......hhhhh..eeee.......ee...ee..hhhhhhhhhhh............hhhhh.......................hhhhh.......--------------------.hhhhhh.....ee.....eeeee....eeeee.....eeeeeeee.........hhhhh.........hhhhh.hhhhhhhh...eeee..hhhhh.hhhhhhhhh....eeeehhhhhhhhhhhhhhhhhhhhhhh..eeeeeeee..........hhhhh.............eeeeeeeee.....hhhhh...eeeeeeeee.............hhhhhhhhhhhhheehhhhhhhhhhee.......hhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---SMB_2  PDB: A:54-97 UniProt: 54-97          SMB_2  PDB: A:98-142 UniProt: 98-142         --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ----------------------SMB_1  PDB: A:73-93  -----------------------SMB_1  PDB: A:117-137-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3waw A  51 WTNTSGSCKGRCFELQEVGPPDCRCDNLCKSYSSCCHDFDELCLKTARGWECTKDRCGEVRNEENACHCSEDCLSRGDCCTNYQVVCKGESHWVDDDCEEIRVPECPAGFVRPPLIIFSVDGFRASYMKKGSKVMPNIEKLRSCGTHAPYMRPVYPTKTFPNLYTLATGLYPESHGIVGNSMYDPVFDATFHLRGREKFNHRWWGGQPLWITATKQGVRAGTFFWSVSIPHERRILTILQWLSLPDNERPSVYAFYSEQPDFSGHKYGPFGPEMTNPLREIDKTVGQLMDGLKQLKLHRCVNVIFVGDHGMEDVTCDRTEFLSNYLTNVDDITLVPGTLGRIRPKIPNNLKYDPKAIIANLTCKKPDQHFKPYMKQHLPKRLHYANNRRIEDLHLLVERRWHVARKP----------CFFQGDHGFDNKVNSMQTVFVGYGPTFKYRTKVPPFENIELYNVMCDLLGLKPAPNNGTHGSLNHLLRTNTFRPTLPEEVSRPNYPGIMYLQSDFDLGCTCD--------------------STEERHLLYGRPAVLYRTSYDILYHTDFESGYSEIFLMPLWTSYTISKQAEVSSIPEHLTNCVRPDVRVSPGFSQNCLAYKNDKQMSYGFLFPPYLSSSPEAKYDAFLVTNMVPMYPAFKRVWTYFQRVLVKKYASERNGVNVISGPIFDYNYNGLRDIEDEIKQYVEGSSIPVPTHYYSIITSCLDFTQPADKCDGPLSVSSFILPHRPDNDESCNSSEDESKWVEELMKMHTARVRDIEHLTGLDFYRKTSRSYSEILTLKTYLHTYE 855
                                    60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450      |  -       470       480       490       500       510       520       530       540       550       560        |-         -       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746       756       766       776       786       796       806       816       826       836       846         
                                                                                                                                                                                                                                                                                                                                                                                                                                                457        468                                                                                                  569                  586
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3WAW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3WAW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3WAW)

(-) Gene Ontology  (29, 29)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (ENPP2_MOUSE | Q9R1E6)
molecular function
    GO:0047391    alkylglycerophosphoethanolamine phosphodiesterase activity    Catalysis of the reaction: H2O + 1-alkyl-sn-glycero-3-phosphoethanolamine = ethanolamine + 1-alkyl-sn-glycerol 3-phosphate.
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0004622    lysophospholipase activity    Catalysis of the reaction: 2-lysophosphatidylcholine + H2O = glycerophosphocholine + a carboxylate.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.
    GO:0004551    nucleotide diphosphatase activity    Catalysis of the reaction: a dinucleotide + H2O = 2 mononucleotides.
    GO:0004528    phosphodiesterase I activity    Catalysis of the sequential hydrolytic removal of 5'-nucleotides from the 3'-hydroxy termini of 3'-hydroxy-terminated oligonucleotides.
    GO:0030247    polysaccharide binding    Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically.
    GO:0005044    scavenger receptor activity    Combining with any modified low-density lipoprotein (LDL) or other polyanionic ligand and delivering the ligand into the cell via endocytosis. Ligands include acetylated and oxidized LDL, Gram-positive and Gram-negative bacteria, apoptotic cells, amyloid-beta fibrils, and advanced glycation end products (AGEs).
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0006935    chemotaxis    The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis).
    GO:0006955    immune response    Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.
    GO:0016042    lipid catabolic process    The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
    GO:0006629    lipid metabolic process    The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0090305    nucleic acid phosphodiester bond hydrolysis    The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.
    GO:0034638    phosphatidylcholine catabolic process    The chemical reactions and pathways resulting in the breakdown of phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline.
    GO:0009395    phospholipid catabolic process    The chemical reactions and pathways resulting in the breakdown of phospholipids, any lipid containing phosphoric acid as a mono- or diester.
    GO:0010634    positive regulation of epithelial cell migration    Any process that activates or increases the frequency, rate or extent of epithelial cell migration.
    GO:2000394    positive regulation of lamellipodium morphogenesis    Any process that activates or increases the frequency, rate or extent of lamellipodium morphogenesis.
    GO:0050731    positive regulation of peptidyl-tyrosine phosphorylation    Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine.
    GO:0006898    receptor-mediated endocytosis    An endocytosis process in which cell surface receptors ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles.
    GO:0045765    regulation of angiogenesis    Any process that modulates the frequency, rate or extent of angiogenesis.
    GO:0030334    regulation of cell migration    Any process that modulates the frequency, rate or extent of cell migration.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0005887    integral component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.

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  3.1.4.39
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ENPP2_MOUSE | Q9R1E6: 3nkm 3nkn 3nko 3nkp 3nkq 3nkr 3wav 3wax 3way 4gtw 4gtx 4gty 4gtz 5hrt 5inh 5jvg 5lia

(-) Related Entries Specified in the PDB File

3wav 3wax 3way