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(-) Description

Title :  STRUCTUAL BASIS FOR THE RECOGNITION OF UBC13 BY THE SHIGELLA FLEXNERI EFFECTOR OSPI
 
Authors :  A. Nishide, M. Kim, K. Takagi, C. Sasakawa, T. Mizushima
Date :  07 Dec 12  (Deposition) - 27 Mar 13  (Release) - 17 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.99
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Type 3 Secretion System, Effector, Deamidation, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Nishide, M. Kim, K. Takagi, A. Himeno, T. Sanada, C. Sasakawa, T. Mizushima
Structural Basis For The Recognition Of Ubc13 By The Shigella Flexneri Effector Ospi.
J. Mol. Biol. V. 425 2623 2013
PubMed-ID: 23542009  |  Reference-DOI: 10.1016/J.JMB.2013.02.037

(-) Compounds

Molecule 1 - ORF169B
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ORF169B, CP0209
    Mutation: YES
    Organism Scientific: SHIGELLA FLEXNERI
    Organism Taxid: 623

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3W30)

(-) Sites  (0, 0)

(no "Site" information available for 3W30)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3W30)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3W30)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3W30)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3W30)

(-) Exons   (0, 0)

(no "Exon" information available for 3W30)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:192
 aligned with Q8VSD5_SHIFL | Q8VSD5 from UniProtKB/TrEMBL  Length:212

    Alignment length:192
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210  
         Q8VSD5_SHIFL    21 NVNVKKLLESLNSKSLGDMDKDSELAATLQKMINPSGGDGNCSGCALHACMAMLGYGVREAPVPNEISEYMTGFFHRHLEQIDSEGIVSHPNETYSKFRERIAENILQNTSKGSVVMISIEQATHWIAGFNDGEKIMFLDVQTGKGFNLYDPVEKSPDAFVDENSSVQVIHVSDQEFDHYANSSSWKSKRLC 212
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh........hhhhh..hhhhhhhhhhhhhh...ee.....hhhhhhhhhhhhhhhhh....eeeeee....eeeeeee....eeee..........................eeeee..hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3w30 A  21 NVNVKKLLESLNSKSLGDMDKDSELAATLQKMINPSGGDGNASGCALHACMAMLGYGVREAPVPNEISEYMTGFFHRHLEQIDSEGIVSHPNETYSKFRERIAENILQNTSKGSVVMISIEQATHWIAGFNDGEKIMFLDVQTGKGFNLYDPVEKSPDAFVDENSSVQVIHVSDQEFDHYANSSSWKSKRLC 212
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210  


Chain B from PDB  Type:PROTEIN  Length:192
 aligned with Q8VSD5_SHIFL | Q8VSD5 from UniProtKB/TrEMBL  Length:212

    Alignment length:192
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210  
         Q8VSD5_SHIFL    21 NVNVKKLLESLNSKSLGDMDKDSELAATLQKMINPSGGDGNCSGCALHACMAMLGYGVREAPVPNEISEYMTGFFHRHLEQIDSEGIVSHPNETYSKFRERIAENILQNTSKGSVVMISIEQATHWIAGFNDGEKIMFLDVQTGKGFNLYDPVEKSPDAFVDENSSVQVIHVSDQEFDHYANSSSWKSKRLC 212
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh........hhhhh..hhhhhhhhhhhhhhh..ee.....hhhhhhhhhhhhhhh......eeeeee....eeeeeee....eeee..........................eeeee..hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3w30 B  21 NVNVKKLLESLNSKSLGDMDKDSELAATLQKMINPSGGDGNASGCALHACMAMLGYGVREAPVPNEISEYMTGFFHRHLEQIDSEGIVSHPNETYSKFRERIAENILQNTSKGSVVMISIEQATHWIAGFNDGEKIMFLDVQTGKGFNLYDPVEKSPDAFVDENSSVQVIHVSDQEFDHYANSSSWKSKRLC 212
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3W30)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3W30)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3W30)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8VSD5_SHIFL | Q8VSD5: 3b21 3w31 4ip3 4xzx

(-) Related Entries Specified in the PDB File

3w31