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(-)Asym./Biol. Unit
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(-) Description

Title :  CRYSTAL STRUCTURE OF OSPI FROM SHIGELLA FLEXINERI
 
Authors :  T. Sanada, M. Kim, C. Sasakawa, T. Mizushima
Date :  19 Jul 11  (Deposition) - 22 Feb 12  (Release) - 04 Apr 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.01
Chains :  Asym./Biol. Unit :  A
Keywords :  Shigella, Bacterial Protein, Effector, Type 3 Secretion System, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Sanada, M. Kim, H. Mimuro, M. Suzuki, M. Ogawa, A. Oyama, H. Ashida, T. Kobayashi, T. Koyama, S. Nagai, Y. Shibata, J. Gohda, J. I. Inoue, T. Mizushima, C. Sasakawa
The Shigella Flexneri Effector Ospi Deamidates Ubc13 To Dampen The Inflammatory Response
Nature V. 483 623 2012
PubMed-ID: 22407319  |  Reference-DOI: 10.1038/NATURE10894

(-) Compounds

Molecule 1 - ORF169B
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX6P
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: ORF169B
    Organism Scientific: SHIGELLA FLEXNERI
    Organism Taxid: 623
    Strain: 2A
    Synonym: OSPI

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3B21)

(-) Sites  (0, 0)

(no "Site" information available for 3B21)

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:62 -A:65

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3B21)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3B21)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3B21)

(-) Exons   (0, 0)

(no "Exon" information available for 3B21)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:192
 aligned with Q8VSD5_SHIFL | Q8VSD5 from UniProtKB/TrEMBL  Length:212

    Alignment length:192
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210  
         Q8VSD5_SHIFL    21 NVNVKKLLESLNSKSLGDMDKDSELAATLQKMINPSGGDGNCSGCALHACMAMLGYGVREAPVPNEISEYMTGFFHRHLEQIDSEGIVSHPNETYSKFRERIAENILQNTSKGSVVMISIEQATHWIAGFNDGEKIMFLDVQTGKGFNLYDPVEKSPDAFVDENSSVQVIHVSDQEFDHYANSSSWKSKRLC 212
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh........hhhhhhhhhhhh...hhhhhh...ee.....hhhhhhhhhhhhhhhhh....eeeeee....eeeeeee....eeee..........................eeeee..hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3b21 A  21 NVNVKKLLESLNSKSLGDMDKDSELAATLQKMINPSGGDGNCSGCALHACMAMLGYGVREAPVPNEISEYMTGFFHRHLEQIDSEGIVSHPNETYSKFRERIAENILQNTSKGSVVMISIEQATHWIAGFNDGEKIMFLDVQTGKGFNLYDPVEKSPDAFVDENSSVQVIHVSDQEFDHYANSSSWKSKRLC 212
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3B21)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3B21)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3B21)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3B21)

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  Cis Peptide Bonds
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  3b21
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8VSD5_SHIFL | Q8VSD5: 3w30 3w31 4ip3 4xzx

(-) Related Entries Specified in the PDB File

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