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(-) Description

Title :  CRYSTAL STRUCTURE OF KLUYVEROMYCES MARXIANUS ATG5
 
Authors :  M. Yamaguchi, N. N. Noda, H. Yamamoto, T. Shima, H. Kumeta, Y. Kobashiga R. Akada, Y. Ohsumi, F. Inagaki
Date :  24 Mar 12  (Deposition) - 01 Aug 12  (Release) - 01 Aug 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D,E
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Keywords :  Autophagy, E3-Like, Ubiquitin-Fold, Atg16, Atg12, Pre-Autophagosomal Structure, Protein Turnover, Protein Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. Yamaguchi, N. N. Noda, H. Yamamoto, T. Shima, H. Kumeta, Y. Kobashigawa, R. Akada, Y. Ohsumi, F. Inagaki
Structural Insights Into Atg10-Mediated Formation Of The Autophagy-Essential Atg12-Atg5 Conjugate
Structure V. 20 1244 2012
PubMed-ID: 22682742  |  Reference-DOI: 10.1016/J.STR.2012.04.018

(-) Compounds

Molecule 1 - ATG5
    ChainsA, B, C, D, E
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPGEX6P
    Expression System StrainBL21(DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    Organism ScientificKLUYVEROMYCES MARXIANUS
    Organism Taxid4911

 Structural Features

(-) Chains, Units

  12345
Asymmetric Unit ABCDE
Biological Unit 1 (1x)A    
Biological Unit 2 (1x) B   
Biological Unit 3 (1x)  C  
Biological Unit 4 (1x)   D 
Biological Unit 5 (1x)    E

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 18)

Asymmetric Unit (2, 18)
No.NameCountTypeFull Name
1EPE3Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2SO415Ligand/IonSULFATE ION
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2SO43Ligand/IonSULFATE ION
Biological Unit 2 (2, 5)
No.NameCountTypeFull Name
1EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2SO44Ligand/IonSULFATE ION
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1EPE-1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2SO42Ligand/IonSULFATE ION
Biological Unit 4 (1, 2)
No.NameCountTypeFull Name
1EPE-1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2SO42Ligand/IonSULFATE ION
Biological Unit 5 (2, 5)
No.NameCountTypeFull Name
1EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2SO44Ligand/IonSULFATE ION

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELEU A:45 , GLY A:46 , TRP A:82 , GLU A:83 , GLN A:135 , TYR A:139 , HOH A:402 , HOH A:410 , LEU D:209BINDING SITE FOR RESIDUE EPE A 301
02AC2SOFTWARECYS A:35 , HIS A:36BINDING SITE FOR RESIDUE SO4 A 302
03AC3SOFTWARELYS A:121 , PRO E:26 , ASN E:27BINDING SITE FOR RESIDUE SO4 A 303
04AC4SOFTWARELYS A:121 , ARG A:124 , HOH A:414 , HOH E:411BINDING SITE FOR RESIDUE SO4 A 304
05AC5SOFTWARELEU B:45 , GLY B:46 , TRP B:82 , GLN B:135 , ILE B:136 , TYR B:139 , LEU E:209BINDING SITE FOR RESIDUE EPE B 301
06AC6SOFTWAREARG A:54 , LYS A:55 , SER B:179BINDING SITE FOR RESIDUE SO4 B 302
07AC7SOFTWARESER B:34 , CYS B:35 , HIS B:36BINDING SITE FOR RESIDUE SO4 B 303
08AC8SOFTWAREARG B:141 , HIS B:142 , LYS B:145BINDING SITE FOR RESIDUE SO4 B 304
09AC9SOFTWARELYS B:121 , ASP D:21 , PRO D:26 , ASN D:27 , HOH D:404BINDING SITE FOR RESIDUE SO4 B 305
10BC1SOFTWARESER B:108 , CYS C:35 , HIS C:36BINDING SITE FOR RESIDUE SO4 C 301
11BC2SOFTWAREPRO C:63 , TYR C:64 , GLU C:65 , ASN C:70 , HIS C:118BINDING SITE FOR RESIDUE SO4 C 302
12BC3SOFTWARECYS D:35 , HIS D:36BINDING SITE FOR RESIDUE SO4 D 301
13BC4SOFTWARETHR A:212 , ARG D:141 , HIS D:142 , LYS D:145BINDING SITE FOR RESIDUE SO4 D 302
14BC5SOFTWARELEU B:209 , TYR E:44 , LEU E:45 , GLY E:46 , TRP E:82 , GLU E:83 , GLN E:135 , TYR E:139 , HOH E:414BINDING SITE FOR RESIDUE EPE E 301
15BC6SOFTWAREARG E:54 , LYS E:55 , SER E:179BINDING SITE FOR RESIDUE SO4 E 302
16BC7SOFTWARESER E:34 , CYS E:35 , HIS E:36BINDING SITE FOR RESIDUE SO4 E 303
17BC8SOFTWAREARG E:141 , HIS E:142 , LYS E:145BINDING SITE FOR RESIDUE SO4 E 304
18BC9SOFTWAREGLY E:235 , LYS E:237 , SER E:238BINDING SITE FOR RESIDUE SO4 E 305

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3VQI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3VQI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3VQI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3VQI)

(-) Exons   (0, 0)

(no "Exon" information available for 3VQI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:252
 aligned with J3QW33_KLUMA | J3QW33 from UniProtKB/TrEMBL  Length:274

    Alignment length:271
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273 
         J3QW33_KLUMA     4 MEELRERVWNGTINVEVVVSDAIVVPNTTLADKSCHIVMLRDAYLGFYLPTVVRKLADTIKVPYESDYRNWWFEYNGEGVPWEYPCGVLFDLLNKKRKKQGNELDDTSLQMWELQLCHGDKYPRGILPLVDGHSQIKDYWRHQWKQACFILNGSAKRIMSLSIPDFENFWVSILSRNRSDFMAVRSKLFSMNKAKSLPVRVWTSNYAVLQPTVPVTDKELSVAELLDSIKLSSDGVKSVIIQGIDVSIEDNIFELYDIFASIDGFLYLVTK 274
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.eeeeeeee..........hhh.eeeeeee...hhhhhhhhhhhhhhhhh..........eeeee..ee.....hhhhhhhhhh.--------------.eeeeeeee............hhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh....eeee.....ee.......---.hhhhhhhh.....--..eeee..eeee...hhhhhhhhhh.....eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vqi A   1 MEELRERVWNGTINVEVVVSDAIVVPNTTLADKSCHIVMLRDAYLGFYLPTVVRKLADTIKVPYESDYRNWWFEYNGEGVPWEYPCGVLFDLLNK--------------QMWELQLCHGDKYPRGILPLVDGHSQIKDYWRHQWKQACFILNGSAKRIMSLSIPDFENFWVSILSRNRSDFMAVRSKLFSMNKAKSLPVRVWTSNYAVLQPTVPVT---LSVAELLDSIKLSS--VKSVIIQGIDVSIEDNIFELYDIFASIDGFLYLVTK 271
                                    10        20        30        40        50        60        70        80        90    |    -       110       120       130       140       150       160       170       180       190       200       210     | 220       230  |  | 240       250       260       270 
                                                                                                                         95            110                                                                                                       216 220          233  |                                   
                                                                                                                                                                                                                                                                     236                                   

Chain B from PDB  Type:PROTEIN  Length:257
 aligned with J3QW33_KLUMA | J3QW33 from UniProtKB/TrEMBL  Length:274

    Alignment length:271
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273 
         J3QW33_KLUMA     4 MEELRERVWNGTINVEVVVSDAIVVPNTTLADKSCHIVMLRDAYLGFYLPTVVRKLADTIKVPYESDYRNWWFEYNGEGVPWEYPCGVLFDLLNKKRKKQGNELDDTSLQMWELQLCHGDKYPRGILPLVDGHSQIKDYWRHQWKQACFILNGSAKRIMSLSIPDFENFWVSILSRNRSDFMAVRSKLFSMNKAKSLPVRVWTSNYAVLQPTVPVTDKELSVAELLDSIKLSSDGVKSVIIQGIDVSIEDNIFELYDIFASIDGFLYLVTK 274
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.eeeeeeee.........hhhhheeeeeee...hhhhhhhhhhhhhhhhh..........eeeee..ee.....hhhhhhhhhh.-----------.....eeeeeee............hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeee.....ee......---..hhhhhhhh.........eeee..eeee...hhhhhhhhhh.....eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vqi B   1 MEELRERVWNGTINVEVVVSDAIVVPNTTLADKSCHIVMLRDAYLGFYLPTVVRKLADTIKVPYESDYRNWWFEYNGEGVPWEYPCGVLFDLLNK-----------TSLQMWELQLCHGDKYPRGILPLVDGHSQIKDYWRHQWKQACFILNGSAKRIMSLSIPDFENFWVSILSRNRSDFMAVRSKLFSMNKAKSLPVRVWTSNYAVLQPTVPV---ELSVAELLDSIKLSSDGVKSVIIQGIDVSIEDNIFELYDIFASIDGFLYLVTK 271
                                    10        20        30        40        50        60        70        80        90    |    -      |110       120       130       140       150       160       170       180       190       200       210    |  220       230       240       250       260       270 
                                                                                                                         95         107                                                                                                         215 219                                                    

Chain C from PDB  Type:PROTEIN  Length:241
 aligned with J3QW33_KLUMA | J3QW33 from UniProtKB/TrEMBL  Length:274

    Alignment length:270
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273
         J3QW33_KLUMA     4 MEELRERVWNGTINVEVVVSDAIVVPNTTLADKSCHIVMLRDAYLGFYLPTVVRKLADTIKVPYESDYRNWWFEYNGEGVPWEYPCGVLFDLLNKKRKKQGNELDDTSLQMWELQLCHGDKYPRGILPLVDGHSQIKDYWRHQWKQACFILNGSAKRIMSLSIPDFENFWVSILSRNRSDFMAVRSKLFSMNKAKSLPVRVWTSNYAVLQPTVPVTDKELSVAELLDSIKLSSDGVKSVIIQGIDVSIEDNIFELYDIFASIDGFLYLVT 273
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhh.eeeeeeee..............eeeeeee...hhhhhhhhhhhhhhhhh..........eeeee..ee.....hhhhhhhhhh.-----------.....eeeeeee............hhhhhhhhhhhhhhhhhhhhh--------..hhhhhhhhhhhhhh..hhhhhhh-----......eeeeeee.....ee..eee..---.hhhhhhhhh....--..eeee..eeee...hhhhhhhhhh.....eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3vqi C   1 MEELRERVWNGTINVEVVVSDAIVVPNTTLADKSCHIVMLRDAYLGFYLPTVVRKLADTIKVPYESDYRNWWFEYNGEGVPWEYPCGVLFDLLNK-----------TSLQMWELQLCHGDKYPRGILPLVDGHSQIKDYWRHQWKQACFIL--------SLSIPDFENFWVSILSRNRSDFMAV-----SMNKAKSLPVRVWTSNYAVLQPTVPVT---LSVAELLDSIKLSS--VKSVIIQGIDVSIEDNIFELYDIFASIDGFLYLVT 270
                                    10        20        30        40        50        60        70        80        90    |    -      |110       120       130       140       150|      160       170       180   |   190       200       210     | 220       230  |  | 240       250       260       270
                                                                                                                         95         107                                         151      160                     184   190                       216 220          233  |                                  
                                                                                                                                                                                                                                                                     236                                  

Chain D from PDB  Type:PROTEIN  Length:256
 aligned with J3QW33_KLUMA | J3QW33 from UniProtKB/TrEMBL  Length:274

    Alignment length:271
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273 
         J3QW33_KLUMA     4 MEELRERVWNGTINVEVVVSDAIVVPNTTLADKSCHIVMLRDAYLGFYLPTVVRKLADTIKVPYESDYRNWWFEYNGEGVPWEYPCGVLFDLLNKKRKKQGNELDDTSLQMWELQLCHGDKYPRGILPLVDGHSQIKDYWRHQWKQACFILNGSAKRIMSLSIPDFENFWVSILSRNRSDFMAVRSKLFSMNKAKSLPVRVWTSNYAVLQPTVPVTDKELSVAELLDSIKLSSDGVKSVIIQGIDVSIEDNIFELYDIFASIDGFLYLVTK 274
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.eeeeeeee..........hhh.eeeeeee...hhhhhhhhhhhhhhhhh..........eeeee..ee.....hhhhhhhhhh.-------------...eeeeeee............hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.....ee..eee..--..hhhhhhhhh........eeee..eeee...hhhhhhhhhh.....eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vqi D   1 MEELRERVWNGTINVEVVVSDAIVVPNTTLADKSCHIVMLRDAYLGFYLPTVVRKLADTIKVPYESDYRNWWFEYNGEGVPWEYPCGVLFDLLNK-------------LQMWELQLCHGDKYPRGILPLVDGHSQIKDYWRHQWKQACFILNGSAKRIMSLSIPDFENFWVSILSRNRSDFMAVRSKLFSMNKAKSLPVRVWTSNYAVLQPTVPVT--ELSVAELLDSIKLSSDGVKSVIIQGIDVSIEDNIFELYDIFASIDGFLYLVTK 271
                                    10        20        30        40        50        60        70        80        90    |    -       110       120       130       140       150       160       170       180       190       200       210     | 220       230       240       250       260       270 
                                                                                                                         95           109                                                                                                        216  |                                                    
                                                                                                                                                                                                                                                    219                                                    

Chain E from PDB  Type:PROTEIN  Length:256
 aligned with J3QW33_KLUMA | J3QW33 from UniProtKB/TrEMBL  Length:274

    Alignment length:271
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273 
         J3QW33_KLUMA     4 MEELRERVWNGTINVEVVVSDAIVVPNTTLADKSCHIVMLRDAYLGFYLPTVVRKLADTIKVPYESDYRNWWFEYNGEGVPWEYPCGVLFDLLNKKRKKQGNELDDTSLQMWELQLCHGDKYPRGILPLVDGHSQIKDYWRHQWKQACFILNGSAKRIMSLSIPDFENFWVSILSRNRSDFMAVRSKLFSMNKAKSLPVRVWTSNYAVLQPTVPVTDKELSVAELLDSIKLSSDGVKSVIIQGIDVSIEDNIFELYDIFASIDGFLYLVTK 274
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhh.eeeeeeee..........hhh.eeeeeee...hhhhhhhhhhhhhhhhh..........eeeee..ee.....hhhhhhhhhh.-------------...eeeeeee.............hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.ee.eeee.....ee...ee..--..hhhhhhhhh........eeee..eeee...hhhhhhhhhh.....eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vqi E   1 MEELRERVWNGTINVEVVVSDAIVVPNTTLADKSCHIVMLRDAYLGFYLPTVVRKLADTIKVPYESDYRNWWFEYNGEGVPWEYPCGVLFDLLNK-------------LQMWELQLCHGDKYPRGILPLVDGHSQIKDYWRHQWKQACFILNGSAKRIMSLSIPDFENFWVSILSRNRSDFMAVRSKLFSMNKAKSLPVRVWTSNYAVLQPTVPVT--ELSVAELLDSIKLSSDGVKSVIIQGIDVSIEDNIFELYDIFASIDGFLYLVTK 271
                                    10        20        30        40        50        60        70        80        90    |    -       110       120       130       140       150       160       170       180       190       200       210     | 220       230       240       250       260       270 
                                                                                                                         95           109                                                                                                        216  |                                                    
                                                                                                                                                                                                                                                    219                                                    

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3VQI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3VQI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3VQI)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E   (J3QW33_KLUMA | J3QW33)
biological process
    GO:0006914    autophagy    The process in which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0034045    pre-autophagosomal structure membrane    A cellular membrane associated with the pre-autophagosomal structure.

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