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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF KLUYVEROMYCES MARXIANUS ATG5
Keywords AUTOPHAGY, E3-LIKE, UBIQUITIN-FOLD, ATG16, ATG12, PRE-AUTOPH STRUCTURE, PROTEIN TURNOVER, PROTEIN TRANSPORT
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3VQI     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ATG5  A 252 1977 0
2  Protein   ATG5  B 257 2027 0
3  Protein   ATG5  C 241 1843 0
4  Protein   ATG5  D 256 1982 0
5  Protein   ATG5  E 256 2015 0
6  Ligand   ATG5  A 4 0 30
7  Ligand   ATG5  B 5 0 35
8  Ligand   ATG5  C 2 0 10
9  Ligand   ATG5  D 2 0 10
10  Ligand   ATG5  E 5 0 35
11 Water     77 0 77
total       1357 9844 197
Proteins
Unit 1 MET1 GLU2 GLU3 LEU4 ARG5 GLU6 ARG7 VAL8 TRP9 ASN10 GLY11 THR12 ILE13 ASN14 VAL15 GLU16 VAL17 VAL18 VAL19 SER20 ASP21 ALA22 ILE23 VAL24 VAL25 PRO26 ASN27 THR28 THR29 LEU30 ALA31 ASP32 LYS33 SER34 CYS35 HIS36 ILE37 VAL38 MET39 LEU40 ARG41 ASP42 ALA43 TYR44 LEU45 GLY46 PHE47 TYR48 LEU49 PRO50 THR51 VAL52 VAL53 ARG54 LYS55 LEU56 ALA57 ASP58 THR59 ILE60 LYS61 VAL62 PRO63 TYR64 GLU65 SER66 ASP67 TYR68 ARG69 ASN70 TRP71 TRP72 PHE73 GLU74 TYR75 ASN76 GLY77 GLU78 GLY79 VAL80 PRO81 TRP82 GLU83 TYR84 PRO85 CYS86 GLY87 VAL88 LEU89 PHE90 ASP91 LEU92 LEU93 ASN94 LYS95 GLN110 MET111 TRP112 GLU113 LEU114 GLN115 LEU116 CYS117 HIS118 GLY119 ASP120 LYS121 TYR122 PRO123 ARG124 GLY125 ILE126 LEU127 PRO128 LEU129 VAL130 ASP131 GLY132 HIS133 SER134 GLN135 ILE136 LYS137 ASP138 TYR139 TRP140 ARG141 HIS142 GLN143 TRP144 LYS145 GLN146 ALA147 CYS148 PHE149 ILE150 LEU151 ASN152 GLY153 SER154 ALA155 LYS156 ARG157 ILE158 MET159 SER160 LEU161 SER162 ILE163 PRO164 ASP165 PHE166 GLU167 ASN168 PHE169 TRP170 VAL171 SER172 ILE173 LEU174 SER175 ARG176 ASN177 ARG178 SER179 ASP180 PHE181 MET182 ALA183 VAL184 ARG185 SER186 LYS187 LEU188 PHE189 SER190 MET191 ASN192 LYS193 ALA194 LYS195 SER196 LEU197 PRO198 VAL199 ARG200 VAL201 TRP202 THR203 SER204 ASN205 TYR206 ALA207 VAL208 LEU209 GLN210 PRO211 THR212 VAL213 PRO214 VAL215 THR216 LEU220 SER221 VAL222 ALA223 GLU224 LEU225 LEU226 ASP227 SER228 ILE229 LYS230 LEU231 SER232 SER233 VAL236 LYS237 SER238 VAL239 ILE240 ILE241 GLN242 GLY243 ILE244 ASP245 VAL246 SER247 ILE248 GLU249 ASP250 ASN251 ILE252 PHE253 GLU254 LEU255 TYR256 ASP257 ILE258 PHE259 ALA260 SER261 ILE262 ASP263 GLY264 PHE265 LEU266 TYR267 LEU268 VAL269 THR270 LYS271
Unit 2 MET1 GLU2 GLU3 LEU4 ARG5 GLU6 ARG7 VAL8 TRP9 ASN10 GLY11 THR12 ILE13 ASN14 VAL15 GLU16 VAL17 VAL18 VAL19 SER20 ASP21 ALA22 ILE23 VAL24 VAL25 PRO26 ASN27 THR28 THR29 LEU30 ALA31 ASP32 LYS33 SER34 CYS35 HIS36 ILE37 VAL38 MET39 LEU40 ARG41 ASP42 ALA43 TYR44 LEU45 GLY46 PHE47 TYR48 LEU49 PRO50 THR51 VAL52 VAL53 ARG54 LYS55 LEU56 ALA57 ASP58 THR59 ILE60 LYS61 VAL62 PRO63 TYR64 GLU65 SER66 ASP67 TYR68 ARG69 ASN70 TRP71 TRP72 PHE73 GLU74 TYR75 ASN76 GLY77 GLU78 GLY79 VAL80 PRO81 TRP82 GLU83 TYR84 PRO85 CYS86 GLY87 VAL88 LEU89 PHE90 ASP91 LEU92 LEU93 ASN94 LYS95 THR107 SER108 LEU109 GLN110 MET111 TRP112 GLU113 LEU114 GLN115 LEU116 CYS117 HIS118 GLY119 ASP120 LYS121 TYR122 PRO123 ARG124 GLY125 ILE126 LEU127 PRO128 LEU129 VAL130 ASP131 GLY132 HIS133 SER134 GLN135 ILE136 LYS137 ASP138 TYR139 TRP140 ARG141 HIS142 GLN143 TRP144 LYS145 GLN146 ALA147 CYS148 PHE149 ILE150 LEU151 ASN152 GLY153 SER154 ALA155 LYS156 ARG157 ILE158 MET159 SER160 LEU161 SER162 ILE163 PRO164 ASP165 PHE166 GLU167 ASN168 PHE169 TRP170 VAL171 SER172 ILE173 LEU174 SER175 ARG176 ASN177 ARG178 SER179 ASP180 PHE181 MET182 ALA183 VAL184 ARG185 SER186 LYS187 LEU188 PHE189 SER190 MET191 ASN192 LYS193 ALA194 LYS195 SER196 LEU197 PRO198 VAL199 ARG200 VAL201 TRP202 THR203 SER204 ASN205 TYR206 ALA207 VAL208 LEU209 GLN210 PRO211 THR212 VAL213 PRO214 VAL215 GLU219 LEU220 SER221 VAL222 ALA223 GLU224 LEU225 LEU226 ASP227 SER228 ILE229 LYS230 LEU231 SER232 SER233 ASP234 GLY235 VAL236 LYS237 SER238 VAL239 ILE240 ILE241 GLN242 GLY243 ILE244 ASP245 VAL246 SER247 ILE248 GLU249 ASP250 ASN251 ILE252 PHE253 GLU254 LEU255 TYR256 ASP257 ILE258 PHE259 ALA260 SER261 ILE262 ASP263 GLY264 PHE265 LEU266 TYR267 LEU268 VAL269 THR270 LYS271
Unit 3 MET1 GLU2 GLU3 LEU4 ARG5 GLU6 ARG7 VAL8 TRP9 ASN10 GLY11 THR12 ILE13 ASN14 VAL15 GLU16 VAL17 VAL18 VAL19 SER20 ASP21 ALA22 ILE23 VAL24 VAL25 PRO26 ASN27 THR28 THR29 LEU30 ALA31 ASP32 LYS33 SER34 CYS35 HIS36 ILE37 VAL38 MET39 LEU40 ARG41 ASP42 ALA43 TYR44 LEU45 GLY46 PHE47 TYR48 LEU49 PRO50 THR51 VAL52 VAL53 ARG54 LYS55 LEU56 ALA57 ASP58 THR59 ILE60 LYS61 VAL62 PRO63 TYR64 GLU65 SER66 ASP67 TYR68 ARG69 ASN70 TRP71 TRP72 PHE73 GLU74 TYR75 ASN76 GLY77 GLU78 GLY79 VAL80 PRO81 TRP82 GLU83 TYR84 PRO85 CYS86 GLY87 VAL88 LEU89 PHE90 ASP91 LEU92 LEU93 ASN94 LYS95 THR107 SER108 LEU109 GLN110 MET111 TRP112 GLU113 LEU114 GLN115 LEU116 CYS117 HIS118 GLY119 ASP120 LYS121 TYR122 PRO123 ARG124 GLY125 ILE126 LEU127 PRO128 LEU129 VAL130 ASP131 GLY132 HIS133 SER134 GLN135 ILE136 LYS137 ASP138 TYR139 TRP140 ARG141 HIS142 GLN143 TRP144 LYS145 GLN146 ALA147 CYS148 PHE149 ILE150 LEU151 SER160 LEU161 SER162 ILE163 PRO164 ASP165 PHE166 GLU167 ASN168 PHE169 TRP170 VAL171 SER172 ILE173 LEU174 SER175 ARG176 ASN177 ARG178 SER179 ASP180 PHE181 MET182 ALA183 VAL184 SER190 MET191 ASN192 LYS193 ALA194 LYS195 SER196 LEU197 PRO198 VAL199 ARG200 VAL201 TRP202 THR203 SER204 ASN205 TYR206 ALA207 VAL208 LEU209 GLN210 PRO211 THR212 VAL213 PRO214 VAL215 THR216 LEU220 SER221 VAL222 ALA223 GLU224 LEU225 LEU226 ASP227 SER228 ILE229 LYS230 LEU231 SER232 SER233 VAL236 LYS237 SER238 VAL239 ILE240 ILE241 GLN242 GLY243 ILE244 ASP245 VAL246 SER247 ILE248 GLU249 ASP250 ASN251 ILE252 PHE253 GLU254 LEU255 TYR256 ASP257 ILE258 PHE259 ALA260 SER261 ILE262 ASP263 GLY264 PHE265 LEU266 TYR267 LEU268 VAL269 THR270
Unit 4 MET1 GLU2 GLU3 LEU4 ARG5 GLU6 ARG7 VAL8 TRP9 ASN10 GLY11 THR12 ILE13 ASN14 VAL15 GLU16 VAL17 VAL18 VAL19 SER20 ASP21 ALA22 ILE23 VAL24 VAL25 PRO26 ASN27 THR28 THR29 LEU30 ALA31 ASP32 LYS33 SER34 CYS35 HIS36 ILE37 VAL38 MET39 LEU40 ARG41 ASP42 ALA43 TYR44 LEU45 GLY46 PHE47 TYR48 LEU49 PRO50 THR51 VAL52 VAL53 ARG54 LYS55 LEU56 ALA57 ASP58 THR59 ILE60 LYS61 VAL62 PRO63 TYR64 GLU65 SER66 ASP67 TYR68 ARG69 ASN70 TRP71 TRP72 PHE73 GLU74 TYR75 ASN76 GLY77 GLU78 GLY79 VAL80 PRO81 TRP82 GLU83 TYR84 PRO85 CYS86 GLY87 VAL88 LEU89 PHE90 ASP91 LEU92 LEU93 ASN94 LYS95 LEU109 GLN110 MET111 TRP112 GLU113 LEU114 GLN115 LEU116 CYS117 HIS118 GLY119 ASP120 LYS121 TYR122 PRO123 ARG124 GLY125 ILE126 LEU127 PRO128 LEU129 VAL130 ASP131 GLY132 HIS133 SER134 GLN135 ILE136 LYS137 ASP138 TYR139 TRP140 ARG141 HIS142 GLN143 TRP144 LYS145 GLN146 ALA147 CYS148 PHE149 ILE150 LEU151 ASN152 GLY153 SER154 ALA155 LYS156 ARG157 ILE158 MET159 SER160 LEU161 SER162 ILE163 PRO164 ASP165 PHE166 GLU167 ASN168 PHE169 TRP170 VAL171 SER172 ILE173 LEU174 SER175 ARG176 ASN177 ARG178 SER179 ASP180 PHE181 MET182 ALA183 VAL184 ARG185 SER186 LYS187 LEU188 PHE189 SER190 MET191 ASN192 LYS193 ALA194 LYS195 SER196 LEU197 PRO198 VAL199 ARG200 VAL201 TRP202 THR203 SER204 ASN205 TYR206 ALA207 VAL208 LEU209 GLN210 PRO211 THR212 VAL213 PRO214 VAL215 THR216 GLU219 LEU220 SER221 VAL222 ALA223 GLU224 LEU225 LEU226 ASP227 SER228 ILE229 LYS230 LEU231 SER232 SER233 ASP234 GLY235 VAL236 LYS237 SER238 VAL239 ILE240 ILE241 GLN242 GLY243 ILE244 ASP245 VAL246 SER247 ILE248 GLU249 ASP250 ASN251 ILE252 PHE253 GLU254 LEU255 TYR256 ASP257 ILE258 PHE259 ALA260 SER261 ILE262 ASP263 GLY264 PHE265 LEU266 TYR267 LEU268 VAL269 THR270 LYS271
Unit 5 MET1 GLU2 GLU3 LEU4 ARG5 GLU6 ARG7 VAL8 TRP9 ASN10 GLY11 THR12 ILE13 ASN14 VAL15 GLU16 VAL17 VAL18 VAL19 SER20 ASP21 ALA22 ILE23 VAL24 VAL25 PRO26 ASN27 THR28 THR29 LEU30 ALA31 ASP32 LYS33 SER34 CYS35 HIS36 ILE37 VAL38 MET39 LEU40 ARG41 ASP42 ALA43 TYR44 LEU45 GLY46 PHE47 TYR48 LEU49 PRO50 THR51 VAL52 VAL53 ARG54 LYS55 LEU56 ALA57 ASP58 THR59 ILE60 LYS61 VAL62 PRO63 TYR64 GLU65 SER66 ASP67 TYR68 ARG69 ASN70 TRP71 TRP72 PHE73 GLU74 TYR75 ASN76 GLY77 GLU78 GLY79 VAL80 PRO81 TRP82 GLU83 TYR84 PRO85 CYS86 GLY87 VAL88 LEU89 PHE90 ASP91 LEU92 LEU93 ASN94 LYS95 LEU109 GLN110 MET111 TRP112 GLU113 LEU114 GLN115 LEU116 CYS117 HIS118 GLY119 ASP120 LYS121 TYR122 PRO123 ARG124 GLY125 ILE126 LEU127 PRO128 LEU129 VAL130 ASP131 GLY132 HIS133 SER134 GLN135 ILE136 LYS137 ASP138 TYR139 TRP140 ARG141 HIS142 GLN143 TRP144 LYS145 GLN146 ALA147 CYS148 PHE149 ILE150 LEU151 ASN152 GLY153 SER154 ALA155 LYS156 ARG157 ILE158 MET159 SER160 LEU161 SER162 ILE163 PRO164 ASP165 PHE166 GLU167 ASN168 PHE169 TRP170 VAL171 SER172 ILE173 LEU174 SER175 ARG176 ASN177 ARG178 SER179 ASP180 PHE181 MET182 ALA183 VAL184 ARG185 SER186 LYS187 LEU188 PHE189 SER190 MET191 ASN192 LYS193 ALA194 LYS195 SER196 LEU197 PRO198 VAL199 ARG200 VAL201 TRP202 THR203 SER204 ASN205 TYR206 ALA207 VAL208 LEU209 GLN210 PRO211 THR212 VAL213 PRO214 VAL215 THR216 GLU219 LEU220 SER221 VAL222 ALA223 GLU224 LEU225 LEU226 ASP227 SER228 ILE229 LYS230 LEU231 SER232 SER233 ASP234 GLY235 VAL236 LYS237 SER238 VAL239 ILE240 ILE241 GLN242 GLY243 ILE244 ASP245 VAL246 SER247 ILE248 GLU249 ASP250 ASN251 ILE252 PHE253 GLU254 LEU255 TYR256 ASP257 ILE258 PHE259 ALA260 SER261 ILE262 ASP263 GLY264 PHE265 LEU266 TYR267 LEU268 VAL269 THR270 LYS271
Ligands
Unit 6 EPE301 SO4302 SO4303 SO4304
Unit 7 EPE301 SO4302 SO4303 SO4304 SO4305
Unit 8 SO4301 SO4302
Unit 9 SO4301 SO4302
Unit 10 EPE301 SO4302 SO4303 SO4304 SO4305
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany