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(-) Description

Title :  STAPHYLOCOCCUS AUREUS FTSZ WITH PC190723
 
Authors :  J. Yamane, T. Matsui, N. Mogi, H. Yamaguchi, H. Takemoto, M. Yao, I. Tana
Date :  20 Jan 12  (Deposition) - 29 Aug 12  (Release) - 14 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Ftsz, Gtp-Binding, Tubulin Homolog, Polymerization, Gtpase, Cell Division, Cell Cycle-Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Matsui, J. Yamane, N. Mogi, H. Yamaguchi, H. Takemoto, M. Yao, I. Tanaka
Structural Reorganization Of The Bacterial Cell-Division Protein Ftsz From Staphylococcus Aureus
Acta Crystallogr. , Sect. D V. 68 1175 2012
PubMed-ID: 22948918  |  Reference-DOI: 10.1107/S0907444912022640

(-) Compounds

Molecule 1 - CELL DIVISION PROTEIN FTSZ
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 12-316
    Gene: FTSZ
    Organism Scientific: STAPHYLOCOCCUS AUREUS
    Organism Taxid: 158878
    Strain: MU50

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
19PC1Ligand/Ion3-[(6-CHLORO[1,3]THIAZOLO[5,4-B]PYRIDIN-2-YL)METHOXY]-2,6-DIFLUOROBENZAMIDE
2CA1Ligand/IonCALCIUM ION
3GDP1Ligand/IonGUANOSINE-5'-DIPHOSPHATE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:200 , VAL A:203 , ASN A:208 , LEU A:209 , 9PC A:403BINDING SITE FOR RESIDUE CA A 401
2AC2SOFTWAREGLY A:20 , GLY A:21 , GLY A:22 , ARG A:29 , GLY A:104 , MET A:105 , GLY A:107 , GLY A:108 , THR A:109 , GLY A:110 , PRO A:135 , GLU A:139 , ARG A:143 , ASN A:166 , PHE A:183 , HOH A:501 , HOH A:509 , HOH A:510 , HOH A:525BINDING SITE FOR RESIDUE GDP A 402
3AC3SOFTWAREGLN A:192 , GLY A:193 , GLY A:196 , LEU A:200 , VAL A:203 , GLY A:205 , VAL A:207 , ASN A:208 , LEU A:209 , GLY A:227 , ASN A:263 , THR A:296 , VAL A:297 , THR A:309 , VAL A:310 , ILE A:311 , CA A:401BINDING SITE FOR RESIDUE 9PC A 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3VOB)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3VOB)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3VOB)

(-) PROSITE Motifs  (2, 2)

Asymmetric/Biological Unit (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FTSZ_1PS01134 FtsZ protein signature 1.FTSZ_STAAM44-78  1A:44-78
2FTSZ_2PS01135 FtsZ protein signature 2.FTSZ_STAAM97-118  1A:97-118

(-) Exons   (0, 0)

(no "Exon" information available for 3VOB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:304
 aligned with FTSZ_STAAM | P0A029 from UniProtKB/Swiss-Prot  Length:390

    Alignment length:304
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311    
           FTSZ_STAAM    12 ATLKVIGVGGGGNNAVNRMIDHGMNNVEFIAINTDGQALNLSKAESKIQIGEKLTRGLGAGANPEIGKKAAEESREQIEDAIQGADMVFVTSGMGGGTGTGAAPVVAKIAKEMGALTVGVVTRPFSFEGRKRQTQAAAGVEAMKAAVDTLIVIPNDRLLDIVDKSTPMMEAFKEADNVLRQGVQGISDLIAVSGEVNLDFADVKTIMSNQGSALMGIGVSSGENRAVEAAKKAISSPLLETSIVGAQGVLMNITGGESLSLFEAQEAADIVQDAADEDVNMIFGTVINPELQDEIVVTVIATGF 315
               SCOP domains d3voba1 A:12-208 Cell-division protein FtsZ                                                                                                                                                          d3voba2 A:209-315 Cell-division protein FtsZ                                                                SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeehhhhhhhhhhhhhhh...eeeeeee.hhhhhh.....eeee.hhhhhh......hhhhhhhhhhhhhhhhhhhhh...eeeeeee....hhhhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh..ee.eeeeeee...hhhhhhhhhhhh............eeeeeeee....hhhhhhhhhhhhhhhhh...eeeeeeee.......eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------FTSZ_1  PDB: A:44-78 UniProt: 44-78------------------FTSZ_2  PDB: A:97-118 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vob A  12 ATLKVIGVGGGGNNAVNRMIDHGMNNVEFIAINTDGQALNLSKAESKIQIGEKLTRGLGAGANPEIGKKAAEESREQIEDAIQGADMVFVTSGMGGGTGTGAAPVVAKIAKEMGALTVGVVTRPFSFEGRKRQTQAAAGVEAMKAAVDTLIVIPNDRLLDIVDKSTPMMEAFKEADNVLRQGVQGISDLIAVSGEVNLDFADVKTIMSNQGSALMGIGVSSGENRAVEAAKKAISSPLLETSIVGAQGVLMNITGGESLSLFEAQEAADIVQDAADEDVNMIFGTVINPELQDEIVVTVIATGF 315
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3VOB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3VOB)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (FTSZ_STAAM | P0A029)
molecular function
    GO:0005525    GTP binding    Interacting selectively and non-covalently with GTP, guanosine triphosphate.
    GO:0003924    GTPase activity    Catalysis of the reaction: GTP + H2O = GDP + phosphate.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0043093    FtsZ-dependent cytokinesis    A cytokinesis process that involves a set of conserved proteins including FtsZ, and results in the formation of two similarly sized and shaped cells.
    GO:0007049    cell cycle    The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
    GO:0051301    cell division    The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
    GO:0051258    protein polymerization    The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein.
cellular component
    GO:0032153    cell division site    The eventual plane of cell division (also known as cell cleavage or cytokinesis) in a dividing cell. In Eukaryotes, the cleavage apparatus, composed of septin structures and the actomyosin contractile ring, forms along this plane, and the mitotic, or meiotic, spindle is aligned perpendicular to the division plane. In bacteria, the cell division site is generally located at mid-cell and is the site at which the cytoskeletal structure, the Z-ring, assembles.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FTSZ_STAAM | P0A029: 3vo8 3vo9 3voa 3vpa 3wgj 3wgk 3wgl 3wgm 3wgn

(-) Related Entries Specified in the PDB File

3vo8 3vo9 3voa