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(-) Description

Title :  CARBAZOLE- AND OXYGEN-BOUND COMPLEX BETWEEN OXYGENASE AND FERREDOXIN IN CARBAZOLE 1,9A-DIOXYGENASE
 
Authors :  Y. Ashikawa, H. Nojiri
Date :  12 Dec 11  (Deposition) - 22 Aug 12  (Release) - 22 Aug 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Catalytic Mechanism, Electron Transfer Complex, Rieske Nonheme Iron Oxygenase System, Terminal Oxygenase, Rieske-Type Ferredoxin, Carbazole 1, 9A-Dioxygenase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Ashikawa, Z. Fujimoto, Y. Usami, K. Inoue, H. Noguchi, H. Yamane, H. Nojiri
Structural Insight Into The Substrate- And Dioxygenbinding Manner In The Catalytic Cycle Of Rieske Nonheme Iron Oxygenase System, Carbazole 1, 9Adioxygenase
Bmc Struct. Biol. V. 12 15 2012
PubMed-ID: 22727022  |  Reference-DOI: 10.1186/1472-6807-12-15

(-) Compounds

Molecule 1 - TERMINAL OXYGENASE COMPONENT OF CARBAZOLE
    Chains: A, B, C
    EC Number: 1.14.12.22
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PEJ3AAC
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CARAA
    Organism Scientific: JANTHINOBACTERIUM
    Organism Taxid: 213804
    Strain: J3
 
Molecule 2 - FERREDOXIN COMPONENT OF CARBAZOLE
    Chains: D, E, F
    EC Number: 1.14.12.22
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PECAC1
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CARAC
    Organism Scientific: PSEUDOMONAS RESINOVORANS
    Organism Taxid: 53412
    Strain: CA10
    Synonym: FERREDOXIN COMPONENT OF CARBAZOLE 1,9A-DIOXYGENASE

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 14)

Asymmetric/Biological Unit (4, 14)
No.NameCountTypeFull Name
19CA2Ligand/Ion9H-CARBAZOLE
2FE23Ligand/IonFE (II) ION
3FES6Ligand/IonFE2/S2 (INORGANIC) CLUSTER
4OXY3Ligand/IonOXYGEN MOLECULE

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:183 , HIS A:187 , ASP A:333 , OXY A:601BINDING SITE FOR RESIDUE FE2 A 501
02AC2SOFTWARECYS A:69 , HIS A:71 , ARG A:72 , VAL A:74 , CYS A:90 , TYR A:92 , HIS A:93 , TRP A:95BINDING SITE FOR RESIDUE FES A 401
03AC3SOFTWAREHIS A:183 , HIS A:187 , PHE A:329 , ASN A:330 , ASP A:333 , FE2 A:501BINDING SITE FOR RESIDUE OXY A 601
04AC4SOFTWAREHIS B:183 , HIS B:187 , ASP B:333 , OXY B:602BINDING SITE FOR RESIDUE FE2 B 501
05AC5SOFTWARECYS B:69 , HIS B:71 , ARG B:72 , CYS B:90 , TYR B:92 , HIS B:93 , TRP B:95BINDING SITE FOR RESIDUE FES B 401
06AC6SOFTWAREHIS B:183 , HIS B:187 , PHE B:329 , ASN B:330 , ASP B:333 , HOH B:431 , FE2 B:501 , 9CA B:2001BINDING SITE FOR RESIDUE OXY B 602
07AC7SOFTWAREGLY B:178 , HIS B:183 , ILE B:184 , ILE B:262 , LEU B:270 , VAL B:272 , PHE B:275 , GLN B:282 , GLU B:284 , PHE B:329 , ASN B:330 , OXY B:602BINDING SITE FOR RESIDUE 9CA B 2001
08AC8SOFTWAREHIS C:183 , HIS C:187 , ASP C:333 , OXY C:603BINDING SITE FOR RESIDUE FE2 C 501
09AC9SOFTWARECYS C:69 , HIS C:71 , ARG C:72 , CYS C:90 , TYR C:92 , HIS C:93 , TRP C:95BINDING SITE FOR RESIDUE FES C 401
10BC1SOFTWAREHIS C:183 , HIS C:187 , PHE C:329 , ASP C:333 , FE2 C:501 , 9CA C:2002BINDING SITE FOR RESIDUE OXY C 603
11BC2SOFTWAREGLY C:178 , HIS C:183 , ILE C:184 , ILE C:262 , LEU C:270 , PHE C:275 , GLN C:282 , PHE C:329 , ASN C:330 , OXY C:603BINDING SITE FOR RESIDUE 9CA C 2002
12BC3SOFTWARECYS D:46 , HIS D:48 , GLY D:49 , CYS D:65 , HIS D:68 , GLY D:70BINDING SITE FOR RESIDUE FES D 201
13BC4SOFTWARECYS E:46 , HIS E:48 , GLY E:49 , CYS E:65 , HIS E:68 , GLY E:70BINDING SITE FOR RESIDUE FES E 201
14BC5SOFTWARECYS F:46 , HIS F:48 , GLY F:49 , CYS F:65 , HIS F:68 , GLY F:70BINDING SITE FOR RESIDUE FES F 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3VMI)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric/Biological Unit
No.Residues
1Leu A:266 -Pro A:267
2Asn A:273 -Pro A:274
3Phe A:275 -Pro A:276
4Leu B:266 -Pro B:267
5Asn B:273 -Pro B:274
6Phe B:275 -Pro B:276
7Leu C:266 -Pro C:267
8Asn C:273 -Pro C:274
9Phe C:275 -Pro C:276
10Ser D:82 -Pro D:83
11Ser E:82 -Pro E:83
12Ser F:82 -Pro F:83

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3VMI)

(-) PROSITE Motifs  (1, 3)

Asymmetric/Biological Unit (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RIESKEPS51296 Rieske [2Fe-2S] iron-sulfur domain profile.CARAC_PSERE6-102
 
 		  3D:6-102
E:6-102
F:6-102

(-) Exons   (0, 0)

(no "Exon" information available for 3VMI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:389
 aligned with Q84II6_JANS3 | Q84II6 from UniProtKB/TrEMBL  Length:384

    Alignment length:389
                                                                                                                                                                                                                                                                                                                                                                                                                         384     
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380   |     
         Q84II6_JANS3     1 MANVDEAILKRVKGWAPYVDAKLGFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNRIDGKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTYRWEDGVLCDILTNPTSAQIGRQKLKTYPVQEAKGCVFIYLGDGDPPPLARDTPPNFLDDDMEILGKNQIIKSNWRLAVENGFDPSHIYIHKDSILVKDNDLALPLGFAPGGDRKQQTRVVDDDVVGRKGVYDLIGEHGVPVFEGTIGGEVVREGAYGEKIVANDISIWLPGVLKVNPFPNPDMMQFEWYVPIDENTHYYFQTLGKPCANDEERKKYEQEFESKWKPMALEGFNNDDIWAREAMVDFYADDKGWVNEILFESDEAIVAWRKLASEHNQGIQTQAHVSG-----   -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhh..hhhhhhh......eeeeeee.hhh.....eeeee..eeeeeeee..eeeeee........hhhhhh......eee.....eeee.....eeee...............ee.eeee..eeeeee......hhhhhh........eeeeeeeeee..hhhhhhhhhhhhhhhhhhh.hhhhhhh..ee..eee...hhhh.eeee........eeeehhhhhheee.eeee..eeeee.ee.......eeeee...eeeee.......eeeeeeeeee..eeeeeeeeeee..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhhhhhhh....hhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vmi A   1 MANVDEAILKRVKGWAPYVDAKLGFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNRIDGKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTYRWEDGVLCDILTNPTSAQIGRQKLKTYPVQEAKGCVFIYLGDGDPPPLARDTPPNFLDDDMEILGKNQIIKSNWRLAVENGFDPSHIYIHKDSILVKDNDLALPLGFAPGGDRKQQTRVVDDDVVGRKGVYDLIGEHGVPVFEGTIGGEVVREGAYGEKIVANDISIWLPGVLKVNPFPNPDMMQFEWYVPIDENTHYYFQTLGKPCANDEERKKYEQEFESKWKPMALEGFNNDDIWAREAMVDFYADDKGWVNEILFESDEAIVAWRKLASEHNQGIQTQAHVSGLEHHH 389
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380         


Chain B from PDB  Type:PROTEIN  Length:388
 aligned with Q84II6_JANS3 | Q84II6 from UniProtKB/TrEMBL  Length:384

    Alignment length:388
                                                                                                                                                                                                                                                                                                                                                                                                                         384    
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380   |    
         Q84II6_JANS3     1 MANVDEAILKRVKGWAPYVDAKLGFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNRIDGKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTYRWEDGVLCDILTNPTSAQIGRQKLKTYPVQEAKGCVFIYLGDGDPPPLARDTPPNFLDDDMEILGKNQIIKSNWRLAVENGFDPSHIYIHKDSILVKDNDLALPLGFAPGGDRKQQTRVVDDDVVGRKGVYDLIGEHGVPVFEGTIGGEVVREGAYGEKIVANDISIWLPGVLKVNPFPNPDMMQFEWYVPIDENTHYYFQTLGKPCANDEERKKYEQEFESKWKPMALEGFNNDDIWAREAMVDFYADDKGWVNEILFESDEAIVAWRKLASEHNQGIQTQAHVSG----   -
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhh..hhhhhhh......eeeeeee.hhh.....eeeee..eeeeeeee..eeeeee........hhhhhh......eee.....eeee.....eeee..................eeee..eeeeee......hhhhhh........eeeeeeeeee..hhhhhhhhhhhhhhhhhhh.hhhhhhh.eee..eee...hhhhheeee........eeeehhhhhheee.eeee..eeeee.ee..ee...eeeee...eeeee.......eeeeeeeeee..eeeeeeeeeee..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhhhhhhh....hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vmi B   1 MANVDEAILKRVKGWAPYVDAKLGFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNRIDGKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTYRWEDGVLCDILTNPTSAQIGRQKLKTYPVQEAKGCVFIYLGDGDPPPLARDTPPNFLDDDMEILGKNQIIKSNWRLAVENGFDPSHIYIHKDSILVKDNDLALPLGFAPGGDRKQQTRVVDDDVVGRKGVYDLIGEHGVPVFEGTIGGEVVREGAYGEKIVANDISIWLPGVLKVNPFPNPDMMQFEWYVPIDENTHYYFQTLGKPCANDEERKKYEQEFESKWKPMALEGFNNDDIWAREAMVDFYADDKGWVNEILFESDEAIVAWRKLASEHNQGIQTQAHVSGLEHH 388
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380        


Chain C from PDB  Type:PROTEIN  Length:389
 aligned with Q84II6_JANS3 | Q84II6 from UniProtKB/TrEMBL  Length:384

    Alignment length:389
                                                                                                                                                                                                                                                                                                                                                                                                                         384     
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380   |     
         Q84II6_JANS3     1 MANVDEAILKRVKGWAPYVDAKLGFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNRIDGKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTYRWEDGVLCDILTNPTSAQIGRQKLKTYPVQEAKGCVFIYLGDGDPPPLARDTPPNFLDDDMEILGKNQIIKSNWRLAVENGFDPSHIYIHKDSILVKDNDLALPLGFAPGGDRKQQTRVVDDDVVGRKGVYDLIGEHGVPVFEGTIGGEVVREGAYGEKIVANDISIWLPGVLKVNPFPNPDMMQFEWYVPIDENTHYYFQTLGKPCANDEERKKYEQEFESKWKPMALEGFNNDDIWAREAMVDFYADDKGWVNEILFESDEAIVAWRKLASEHNQGIQTQAHVSG-----   -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhh..hhhhhhh......eeeeeee.hhh.....eeeee..eeeeeeee..eeeeee........hhhhhh......eee.....eeee.....eeee..................eeee..eeeeee......hhhhhh........eeeeeeeeee..hhhhhhhhhh..hhhhhhh.hhhhhhh.eee..eee...hhhhheeee........eeeehhhhhheee.eeee..eeeee.ee..ee...eeeee...eeeee.......eeeeeeee.....eeeeeeeeee..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhhhhhhh....hhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vmi C   1 MANVDEAILKRVKGWAPYVDAKLGFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNRIDGKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTYRWEDGVLCDILTNPTSAQIGRQKLKTYPVQEAKGCVFIYLGDGDPPPLARDTPPNFLDDDMEILGKNQIIKSNWRLAVENGFDPSHIYIHKDSILVKDNDLALPLGFAPGGDRKQQTRVVDDDVVGRKGVYDLIGEHGVPVFEGTIGGEVVREGAYGEKIVANDISIWLPGVLKVNPFPNPDMMQFEWYVPIDENTHYYFQTLGKPCANDEERKKYEQEFESKWKPMALEGFNNDDIWAREAMVDFYADDKGWVNEILFESDEAIVAWRKLASEHNQGIQTQAHVSGLEHHH 389
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380         


Chain D from PDB  Type:PROTEIN  Length:104
 aligned with CARAC_PSERE | Q8GI16 from UniProtKB/Swiss-Prot  Length:107

    Alignment length:104
                                    13        23        33        43        53        63        73        83        93       103    
          CARAC_PSERE     4 IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK 107
               SCOP domains -------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.hhh.....eee.......eeeeee..eeeeee........hhhhheee..eee......eee.....eee........eeeeee...eeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --RIESKE  PDB: D:6-102 UniProt: 6-102                                                              ----- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 3vmi D   4 IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK 107
                                    13        23        33        43        53        63        73        83        93       103    


Chain E from PDB  Type:PROTEIN  Length:107
 aligned with CARAC_PSERE | Q8GI16 from UniProtKB/Swiss-Prot  Length:107

    Alignment length:107
                                                                                                                                  107  
                                    12        22        32        42        52        62        72        82        92       102    |  
          CARAC_PSERE     3 QIWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK--   -
               SCOP domains ----------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.hhh.....eeeee..eeeeeeeee..eeeeee........hhhhheee..eee......eee.....eee...........eeee..eeeee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---RIESKE  PDB: E:6-102 UniProt: 6-102                                                              ------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 3vmi E   3 QIWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKKLE 109
                                    12        22        32        42        52        62        72        82        92       102       


Chain F from PDB  Type:PROTEIN  Length:104
 aligned with CARAC_PSERE | Q8GI16 from UniProtKB/Swiss-Prot  Length:107

    Alignment length:104
                                    13        23        33        43        53        63        73        83        93       103    
          CARAC_PSERE     4 IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK 107
               SCOP domains -------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.hhh....eeeeee..eeeeeeeee..eeeeee........hhhhheee..eee......eee.....eee........ee.eeee..eeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --RIESKE  PDB: F:6-102 UniProt: 6-102                                                              ----- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 3vmi F   4 IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK 107
                                    13        23        33        43        53        63        73        83        93       103
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3VMI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3VMI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3VMI)

(-) Gene Ontology  (8, 13)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C   (Q84II6_JANS3 | Q84II6)
molecular function
    GO:0051537    2 iron, 2 sulfur cluster binding    Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Chain D,E,F   (CARAC_PSERE | Q8GI16)
molecular function
    GO:0051537    2 iron, 2 sulfur cluster binding    Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands.
    GO:0051213    dioxygenase activity    Catalysis of an oxidation-reduction (redox) reaction in which both atoms of oxygen from one molecule of O2 are incorporated into the (reduced) product(s) of the reaction. The two atoms of oxygen may be distributed between two different products.
    GO:0008901    ferredoxin hydrogenase activity    Catalysis of the reaction: 2 reduced ferredoxin + 2 H+ = 2 oxidized ferredoxin + H2.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0046232    carbazole catabolic process    The chemical reactions and pathways resulting in the breakdown of carbazole, a heterocyclic aromatic compound containing a dibenzopyrrole system that is produced during coal gasification and is present in cigarette smoke. Coal tar produced at high temperature contains an average of 1.5% carbazole. It is used widely in synthesis of dyes, pharmaceuticals, and plastics and is a suspected carcinogen.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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    Ser D:82 - Pro D:83   [ RasMol ]  
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    Ser F:82 - Pro F:83   [ RasMol ]  
 

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  Q84II6_JANS3 | Q84II6
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  1.14.12.22
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CARAC_PSERE | Q8GI16: 1vck 2de5 2de6 2de7 3vmg 3vmh 4nb8 4nb9 4nba 4nbb 4nbc 4nbd 4nbe 4nbf 4nbg 4nbh
UniProtKB/TrEMBL
        Q84II6_JANS3 | Q84II6: 1ww9 2de5 2de6 2de7 3vmg 3vmh 4nb8 4nb9 4nba 4nbb 4nbc 4nbd 4nbe 4nbf 4nbg 4nbh

(-) Related Entries Specified in the PDB File

3vmg 3vmh