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(-) Description

Title :  BLAC E166A CDC-1 ACYL-INTERMEDIATE
 
Authors :  J. A. Mire, J. C. Sacchettini, Tb Structural Genomics Consortium (
Date :  09 Jan 12  (Deposition) - 19 Sep 12  (Release) - 19 Sep 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.57
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Beta-Lactamase, Serine Hydrolase, Serine Esterase, Acyl-Intermediate, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Xie, J. A. Mire, Y. Kong, M. Chang, J. C. Sacchettini, J. D. Cirillo, J. Rao
Blac-Specific Fluorogenic Probes For Rapid Tuberculosis Detection
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - BETA-LACTAMASE
    Chains: A, B, C, D
    EC Number: 3.5.2.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BLAA, BLAC, MT2128, MTCY49.07C, RV2068C
    Mutation: YES
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 1773
    Synonym: PENICILLINASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 9)

Asymmetric Unit (2, 9)
No.NameCountTypeFull Name
1CD62Ligand/Ion(2R)-5-METHYLIDENE-2-{(1R)-2-OXO-1-[(PHENYLACETYL)AMINO]ETHYL}-5,6-DIHYDRO-2H-1,3-THIAZINE-4-CARBOXYLICACID
2PO47Ligand/IonPHOSPHATE ION
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1CD6-1Ligand/Ion(2R)-5-METHYLIDENE-2-{(1R)-2-OXO-1-[(PHENYLACETYL)AMINO]ETHYL}-5,6-DIHYDRO-2H-1,3-THIAZINE-4-CARBOXYLICACID
2PO43Ligand/IonPHOSPHATE ION
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1CD61Ligand/Ion(2R)-5-METHYLIDENE-2-{(1R)-2-OXO-1-[(PHENYLACETYL)AMINO]ETHYL}-5,6-DIHYDRO-2H-1,3-THIAZINE-4-CARBOXYLICACID
2PO41Ligand/IonPHOSPHATE ION
Biological Unit 3 (2, 2)
No.NameCountTypeFull Name
1CD61Ligand/Ion(2R)-5-METHYLIDENE-2-{(1R)-2-OXO-1-[(PHENYLACETYL)AMINO]ETHYL}-5,6-DIHYDRO-2H-1,3-THIAZINE-4-CARBOXYLICACID
2PO41Ligand/IonPHOSPHATE ION
Biological Unit 4 (1, 2)
No.NameCountTypeFull Name
1CD6-1Ligand/Ion(2R)-5-METHYLIDENE-2-{(1R)-2-OXO-1-[(PHENYLACETYL)AMINO]ETHYL}-5,6-DIHYDRO-2H-1,3-THIAZINE-4-CARBOXYLICACID
2PO42Ligand/IonPHOSPHATE ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:70 , SER A:130 , THR A:216 , THR A:235 , THR A:237 , GLN B:110 , GLN B:111BINDING SITE FOR RESIDUE PO4 A 301
2AC2SOFTWAREASP A:124 , ARG A:128 , ARG A:213 , HOH A:431BINDING SITE FOR RESIDUE PO4 A 302
3AC3SOFTWAREARG A:171 , ASP A:240 , HOH A:416 , SER B:99 , GLN B:114BINDING SITE FOR RESIDUE PO4 A 303
4AC4SOFTWAREGLN A:111 , CYS B:69 , SER B:70 , SER B:130 , ASN B:170 , ARG B:220 , THR B:235 , GLY B:236 , THR B:237BINDING SITE FOR RESIDUE CD6 B 301
5AC5SOFTWAREASP B:124 , ARG B:128 , ARG B:213BINDING SITE FOR RESIDUE PO4 B 302
6AC6SOFTWARESER C:70 , ILE C:105 , SER C:130 , ASN C:170 , THR C:235 , GLY C:236 , THR C:237 , GLY C:238 , HOH C:403BINDING SITE FOR RESIDUE CD6 C 301
7AC7SOFTWAREASP C:124 , ARG C:128 , ARG C:213BINDING SITE FOR RESIDUE PO4 C 302
8AC8SOFTWAREGLN C:111 , SER D:70 , SER D:130 , THR D:216 , THR D:235 , THR D:237BINDING SITE FOR RESIDUE PO4 D 301
9AC9SOFTWAREASP D:124 , ARG D:128 , ARG D:213BINDING SITE FOR RESIDUE PO4 D 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3VFH)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Ala A:166 -Pro A:167
2Ala B:166 -Pro B:167
3Ala C:166 -Pro C:167
4Ala D:166 -Pro D:167

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3VFH)

(-) PROSITE Motifs  (1, 4)

Asymmetric Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BETA_LACTAMASE_APS00146 Beta-lactamase class-A active site.BLAC_MYCTO80-95
 
 
 		  4A:66-81
B:66-81
C:66-81
D:66-81
BLAC_MYCTU80-95
 
 
 		  4A:66-81
B:66-81
C:66-81
D:66-81
Biological Unit 1 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BETA_LACTAMASE_APS00146 Beta-lactamase class-A active site.BLAC_MYCTO80-95
 
 
 		  1A:66-81
-
-
-
BLAC_MYCTU80-95
 
 
 		  1A:66-81
-
-
-
Biological Unit 2 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BETA_LACTAMASE_APS00146 Beta-lactamase class-A active site.BLAC_MYCTO80-95
 
 
 		  1-
B:66-81
-
-
BLAC_MYCTU80-95
 
 
 		  1-
B:66-81
-
-
Biological Unit 3 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BETA_LACTAMASE_APS00146 Beta-lactamase class-A active site.BLAC_MYCTO80-95
 
 
 		  1-
-
C:66-81
-
BLAC_MYCTU80-95
 
 
 		  1-
-
C:66-81
-
Biological Unit 4 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BETA_LACTAMASE_APS00146 Beta-lactamase class-A active site.BLAC_MYCTO80-95
 
 
 		  1-
-
-
D:66-81
BLAC_MYCTU80-95
 
 
 		  1-
-
-
D:66-81

(-) Exons   (0, 0)

(no "Exon" information available for 3VFH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:265
 aligned with BLAC_MYCTO | P9WKD2 from UniProtKB/Swiss-Prot  Length:307

    Alignment length:265
                                    52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302     
          BLAC_MYCTO     43 DLADRFAELERRYDARLGVYVPATGTTAAIEYRADERFAFCSTFKAPLVAAVLHQNPLTHLDKLITYTSDDIRSISPVAQQHVQTGMTIGQLCDAAIRYSDGTAANLLLADLGGPGGGTAAFTGYLRSLGDTVSRLDAEEPELNRDPPGDERDTTTPHAIALVLQQLVLGNALPPDKRALLTDWMARNTTGAKRIRAGFPADWKVIDKTGTGDYGRANDIAVVWSPTGVPYVVAVMSDRAGGGYDAEPREALLAEAATCVAGVLA  307
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh..eeeeee........eee.....ee....hhhhhhhhhhhh.hhhhhh.ee............hhhhhh...eehhhhhhhhhhh.hhhhhhhhhhh...hhhhhhhhhhhhhh............hhhhh........eehhhhhhhhhhhhhh....hhhhhhhhhhhhhh......hhhhh.....eeeeeeeee...eeeeeeeee.....eeeeeeeeehhhhh.....hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------BETA_LACTAMASE_A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3vfh A   29 DLADRFAELERRYDARLGVYVPATGTTAAIEYRADERFAFCSTFKAPLVAAVLHQNPLTHLDKLITYTSDDIRSISPVAQQHVQTGMTIGQLCDAAIRYSDGTAANLLLADLGGPGGGTAAFTGYLRSLGDTVSRLDAEAPELNRDPPGDERDTTTPHAIALVLQQLVLGNALPPDKRALLTDWMARNTTGAKRIRAGFPADWKVIDKTGTGDYGRANDIAVVWSPTGVPYVVAVMSDRAGGGYDAEPREALLAEAATCVAGVLA  293
                                    38        48        58        68        78    ||  90       100       110       120       130       140     ||146       156       166       176       186       196       206       216       226       236 ||    247    || 258       268       278       288     
                                                                                 83|                                                        145A|||                                                                                          238|         252|                                       
                                                                                  86                                                         145B||                                                                                           240          254                                       
                                                                                                                                              145C|                                                                                                                                                  
                                                                                                                                               145D                                                                                                                                                  


Chain A from PDB  Type:PROTEIN  Length:265
 aligned with BLAC_MYCTU | P9WKD3 from UniProtKB/Swiss-Prot  Length:307

    Alignment length:265
                                    52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302     
          BLAC_MYCTU     43 DLADRFAELERRYDARLGVYVPATGTTAAIEYRADERFAFCSTFKAPLVAAVLHQNPLTHLDKLITYTSDDIRSISPVAQQHVQTGMTIGQLCDAAIRYSDGTAANLLLADLGGPGGGTAAFTGYLRSLGDTVSRLDAEEPELNRDPPGDERDTTTPHAIALVLQQLVLGNALPPDKRALLTDWMARNTTGAKRIRAGFPADWKVIDKTGTGDYGRANDIAVVWSPTGVPYVVAVMSDRAGGGYDAEPREALLAEAATCVAGVLA  307
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh..eeeeee........eee.....ee....hhhhhhhhhhhh.hhhhhh.ee............hhhhhh...eehhhhhhhhhhh.hhhhhhhhhhh...hhhhhhhhhhhhhh............hhhhh........eehhhhhhhhhhhhhh....hhhhhhhhhhhhhh......hhhhh.....eeeeeeeee...eeeeeeeee.....eeeeeeeeehhhhh.....hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------BETA_LACTAMASE_A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3vfh A   29 DLADRFAELERRYDARLGVYVPATGTTAAIEYRADERFAFCSTFKAPLVAAVLHQNPLTHLDKLITYTSDDIRSISPVAQQHVQTGMTIGQLCDAAIRYSDGTAANLLLADLGGPGGGTAAFTGYLRSLGDTVSRLDAEAPELNRDPPGDERDTTTPHAIALVLQQLVLGNALPPDKRALLTDWMARNTTGAKRIRAGFPADWKVIDKTGTGDYGRANDIAVVWSPTGVPYVVAVMSDRAGGGYDAEPREALLAEAATCVAGVLA  293
                                    38        48        58        68        78    ||  90       100       110       120       130       140     ||146       156       166       176       186       196       206       216       226       236 ||    247    || 258       268       278       288     
                                                                                 83|                                                        145A|||                                                                                          238|         252|                                       
                                                                                  86                                                         145B||                                                                                           240          254                                       
                                                                                                                                              145C|                                                                                                                                                  
                                                                                                                                               145D                                                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:265
 aligned with BLAC_MYCTO | P9WKD2 from UniProtKB/Swiss-Prot  Length:307

    Alignment length:265
                                    52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302     
          BLAC_MYCTO     43 DLADRFAELERRYDARLGVYVPATGTTAAIEYRADERFAFCSTFKAPLVAAVLHQNPLTHLDKLITYTSDDIRSISPVAQQHVQTGMTIGQLCDAAIRYSDGTAANLLLADLGGPGGGTAAFTGYLRSLGDTVSRLDAEEPELNRDPPGDERDTTTPHAIALVLQQLVLGNALPPDKRALLTDWMARNTTGAKRIRAGFPADWKVIDKTGTGDYGRANDIAVVWSPTGVPYVVAVMSDRAGGGYDAEPREALLAEAATCVAGVLA  307
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh.eeeeee........eee.....ee....hhhhhhhhhhhh.hhhhhh.ee..hhhhh.....hhhhh....eehhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh........................eehhhhhhhhhhhhhh....hhhhhhhhhhhhhh......hhhhhh....eeeeeeee.....eeeeeeee.....eeeeeeeeehhhhh.....hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------BETA_LACTAMASE_A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3vfh B   29 DLADRFAELERRYDARLGVYVPATGTTAAIEYRADERFAFCSTFKAPLVAAVLHQNPLTHLDKLITYTSDDIRSISPVAQQHVQTGMTIGQLCDAAIRYSDGTAANLLLADLGGPGGGTAAFTGYLRSLGDTVSRLDAEAPELNRDPPGDERDTTTPHAIALVLQQLVLGNALPPDKRALLTDWMARNTTGAKRIRAGFPADWKVIDKTGTGDYGRANDIAVVWSPTGVPYVVAVMSDRAGGGYDAEPREALLAEAATCVAGVLA  293
                                    38        48        58        68        78    ||  90       100       110       120       130       140     ||146       156       166       176       186       196       206       216       226       236 ||    247    || 258       268       278       288     
                                                                                 83|                                                        145A|||                                                                                          238|         252|                                       
                                                                                  86                                                         145B||                                                                                           240          254                                       
                                                                                                                                              145C|                                                                                                                                                  
                                                                                                                                               145D                                                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:265
 aligned with BLAC_MYCTU | P9WKD3 from UniProtKB/Swiss-Prot  Length:307

    Alignment length:265
                                    52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302     
          BLAC_MYCTU     43 DLADRFAELERRYDARLGVYVPATGTTAAIEYRADERFAFCSTFKAPLVAAVLHQNPLTHLDKLITYTSDDIRSISPVAQQHVQTGMTIGQLCDAAIRYSDGTAANLLLADLGGPGGGTAAFTGYLRSLGDTVSRLDAEEPELNRDPPGDERDTTTPHAIALVLQQLVLGNALPPDKRALLTDWMARNTTGAKRIRAGFPADWKVIDKTGTGDYGRANDIAVVWSPTGVPYVVAVMSDRAGGGYDAEPREALLAEAATCVAGVLA  307
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh.eeeeee........eee.....ee....hhhhhhhhhhhh.hhhhhh.ee..hhhhh.....hhhhh....eehhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh........................eehhhhhhhhhhhhhh....hhhhhhhhhhhhhh......hhhhhh....eeeeeeee.....eeeeeeee.....eeeeeeeeehhhhh.....hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------BETA_LACTAMASE_A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3vfh B   29 DLADRFAELERRYDARLGVYVPATGTTAAIEYRADERFAFCSTFKAPLVAAVLHQNPLTHLDKLITYTSDDIRSISPVAQQHVQTGMTIGQLCDAAIRYSDGTAANLLLADLGGPGGGTAAFTGYLRSLGDTVSRLDAEAPELNRDPPGDERDTTTPHAIALVLQQLVLGNALPPDKRALLTDWMARNTTGAKRIRAGFPADWKVIDKTGTGDYGRANDIAVVWSPTGVPYVVAVMSDRAGGGYDAEPREALLAEAATCVAGVLA  293
                                    38        48        58        68        78    ||  90       100       110       120       130       140     ||146       156       166       176       186       196       206       216       226       236 ||    247    || 258       268       278       288     
                                                                                 83|                                                        145A|||                                                                                          238|         252|                                       
                                                                                  86                                                         145B||                                                                                           240          254                                       
                                                                                                                                              145C|                                                                                                                                                  
                                                                                                                                               145D                                                                                                                                                  


Chain C from PDB  Type:PROTEIN  Length:265
 aligned with BLAC_MYCTO | P9WKD2 from UniProtKB/Swiss-Prot  Length:307

    Alignment length:265
                                    52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302     
          BLAC_MYCTO     43 DLADRFAELERRYDARLGVYVPATGTTAAIEYRADERFAFCSTFKAPLVAAVLHQNPLTHLDKLITYTSDDIRSISPVAQQHVQTGMTIGQLCDAAIRYSDGTAANLLLADLGGPGGGTAAFTGYLRSLGDTVSRLDAEEPELNRDPPGDERDTTTPHAIALVLQQLVLGNALPPDKRALLTDWMARNTTGAKRIRAGFPADWKVIDKTGTGDYGRANDIAVVWSPTGVPYVVAVMSDRAGGGYDAEPREALLAEAATCVAGVLA  307
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh.eeeeee........eee.....ee.hhhhhhhhhhhhhhhhhhhhhh.ee..hhhhh.....hhhhh....eehhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhh.......eehhhhhhhhhhhhhh....hhhhhhhhhhhhhh................eeeeeeeee...eeeeeeeee.....eeeeeeeeehhhhh.....hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------BETA_LACTAMASE_A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3vfh C   29 DLADRFAELERRYDARLGVYVPATGTTAAIEYRADERFAFCSTFKAPLVAAVLHQNPLTHLDKLITYTSDDIRSISPVAQQHVQTGMTIGQLCDAAIRYSDGTAANLLLADLGGPGGGTAAFTGYLRSLGDTVSRLDAEAPELNRDPPGDERDTTTPHAIALVLQQLVLGNALPPDKRALLTDWMARNTTGAKRIRAGFPADWKVIDKTGTGDYGRANDIAVVWSPTGVPYVVAVMSDRAGGGYDAEPREALLAEAATCVAGVLA  293
                                    38        48        58        68        78    ||  90       100       110       120       130       140     ||146       156       166       176       186       196       206       216       226       236 ||    247    || 258       268       278       288     
                                                                                 83|                                                        145A|||                                                                                          238|         252|                                       
                                                                                  86                                                         145B||                                                                                           240          254                                       
                                                                                                                                              145C|                                                                                                                                                  
                                                                                                                                               145D                                                                                                                                                  


Chain C from PDB  Type:PROTEIN  Length:265
 aligned with BLAC_MYCTU | P9WKD3 from UniProtKB/Swiss-Prot  Length:307

    Alignment length:265
                                    52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302     
          BLAC_MYCTU     43 DLADRFAELERRYDARLGVYVPATGTTAAIEYRADERFAFCSTFKAPLVAAVLHQNPLTHLDKLITYTSDDIRSISPVAQQHVQTGMTIGQLCDAAIRYSDGTAANLLLADLGGPGGGTAAFTGYLRSLGDTVSRLDAEEPELNRDPPGDERDTTTPHAIALVLQQLVLGNALPPDKRALLTDWMARNTTGAKRIRAGFPADWKVIDKTGTGDYGRANDIAVVWSPTGVPYVVAVMSDRAGGGYDAEPREALLAEAATCVAGVLA  307
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh.eeeeee........eee.....ee.hhhhhhhhhhhhhhhhhhhhhh.ee..hhhhh.....hhhhh....eehhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhh.......eehhhhhhhhhhhhhh....hhhhhhhhhhhhhh................eeeeeeeee...eeeeeeeee.....eeeeeeeeehhhhh.....hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------BETA_LACTAMASE_A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3vfh C   29 DLADRFAELERRYDARLGVYVPATGTTAAIEYRADERFAFCSTFKAPLVAAVLHQNPLTHLDKLITYTSDDIRSISPVAQQHVQTGMTIGQLCDAAIRYSDGTAANLLLADLGGPGGGTAAFTGYLRSLGDTVSRLDAEAPELNRDPPGDERDTTTPHAIALVLQQLVLGNALPPDKRALLTDWMARNTTGAKRIRAGFPADWKVIDKTGTGDYGRANDIAVVWSPTGVPYVVAVMSDRAGGGYDAEPREALLAEAATCVAGVLA  293
                                    38        48        58        68        78    ||  90       100       110       120       130       140     ||146       156       166       176       186       196       206       216       226       236 ||    247    || 258       268       278       288     
                                                                                 83|                                                        145A|||                                                                                          238|         252|                                       
                                                                                  86                                                         145B||                                                                                           240          254                                       
                                                                                                                                              145C|                                                                                                                                                  
                                                                                                                                               145D                                                                                                                                                  


Chain D from PDB  Type:PROTEIN  Length:265
 aligned with BLAC_MYCTO | P9WKD2 from UniProtKB/Swiss-Prot  Length:307

    Alignment length:265
                                    52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302     
          BLAC_MYCTO     43 DLADRFAELERRYDARLGVYVPATGTTAAIEYRADERFAFCSTFKAPLVAAVLHQNPLTHLDKLITYTSDDIRSISPVAQQHVQTGMTIGQLCDAAIRYSDGTAANLLLADLGGPGGGTAAFTGYLRSLGDTVSRLDAEEPELNRDPPGDERDTTTPHAIALVLQQLVLGNALPPDKRALLTDWMARNTTGAKRIRAGFPADWKVIDKTGTGDYGRANDIAVVWSPTGVPYVVAVMSDRAGGGYDAEPREALLAEAATCVAGVLA  307
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh...eeeeee........eee.....ee.hhhhhhhhhhhhhhh.hhhhhh.ee..hhhhh.....hhhhhh...eehhhhhhhhhhh.hhhhhhhhhhh..hhhhhhhhhhhhhhh............hhhhh........eehhhhhhhhhhhhhh....hhhhhhhhhhhhhh......hhhhhh....eeeeeeeee...eeeeeeeee.....eeeeeeeeehhhhhhhh..hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------BETA_LACTAMASE_A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3vfh D   29 DLADRFAELERRYDARLGVYVPATGTTAAIEYRADERFAFCSTFKAPLVAAVLHQNPLTHLDKLITYTSDDIRSISPVAQQHVQTGMTIGQLCDAAIRYSDGTAANLLLADLGGPGGGTAAFTGYLRSLGDTVSRLDAEAPELNRDPPGDERDTTTPHAIALVLQQLVLGNALPPDKRALLTDWMARNTTGAKRIRAGFPADWKVIDKTGTGDYGRANDIAVVWSPTGVPYVVAVMSDRAGGGYDAEPREALLAEAATCVAGVLA  293
                                    38        48        58        68        78    ||  90       100       110       120       130       140     ||146       156       166       176       186       196       206       216       226       236 ||    247    || 258       268       278       288     
                                                                                 83|                                                        145A|||                                                                                          238|         252|                                       
                                                                                  86                                                         145B||                                                                                           240          254                                       
                                                                                                                                              145C|                                                                                                                                                  
                                                                                                                                               145D                                                                                                                                                  


Chain D from PDB  Type:PROTEIN  Length:265
 aligned with BLAC_MYCTU | P9WKD3 from UniProtKB/Swiss-Prot  Length:307

    Alignment length:265
                                    52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302     
          BLAC_MYCTU     43 DLADRFAELERRYDARLGVYVPATGTTAAIEYRADERFAFCSTFKAPLVAAVLHQNPLTHLDKLITYTSDDIRSISPVAQQHVQTGMTIGQLCDAAIRYSDGTAANLLLADLGGPGGGTAAFTGYLRSLGDTVSRLDAEEPELNRDPPGDERDTTTPHAIALVLQQLVLGNALPPDKRALLTDWMARNTTGAKRIRAGFPADWKVIDKTGTGDYGRANDIAVVWSPTGVPYVVAVMSDRAGGGYDAEPREALLAEAATCVAGVLA  307
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh...eeeeee........eee.....ee.hhhhhhhhhhhhhhh.hhhhhh.ee..hhhhh.....hhhhhh...eehhhhhhhhhhh.hhhhhhhhhhh..hhhhhhhhhhhhhhh............hhhhh........eehhhhhhhhhhhhhh....hhhhhhhhhhhhhh......hhhhhh....eeeeeeeee...eeeeeeeee.....eeeeeeeeehhhhhhhh..hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------BETA_LACTAMASE_A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3vfh D   29 DLADRFAELERRYDARLGVYVPATGTTAAIEYRADERFAFCSTFKAPLVAAVLHQNPLTHLDKLITYTSDDIRSISPVAQQHVQTGMTIGQLCDAAIRYSDGTAANLLLADLGGPGGGTAAFTGYLRSLGDTVSRLDAEAPELNRDPPGDERDTTTPHAIALVLQQLVLGNALPPDKRALLTDWMARNTTGAKRIRAGFPADWKVIDKTGTGDYGRANDIAVVWSPTGVPYVVAVMSDRAGGGYDAEPREALLAEAATCVAGVLA  293
                                    38        48        58        68        78    ||  90       100       110       120       130       140     ||146       156       166       176       186       196       206       216       226       236 ||    247    || 258       268       278       288     
                                                                                 83|                                                        145A|||                                                                                          238|         252|                                       
                                                                                  86                                                         145B||                                                                                           240          254                                       
                                                                                                                                              145C|                                                                                                                                                  
                                                                                                                                               145D
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3VFH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3VFH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3VFH)

(-) Gene Ontology  (10, 16)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (BLAC_MYCTU | P9WKD3)
molecular function
    GO:0008800    beta-lactamase activity    Catalysis of the reaction: a beta-lactam + H2O = a substituted beta-amino acid.
    GO:0033251    cephalosporinase activity    Catalysis of the reaction: a cephalosporin + H2O = a substituted beta-amino acid derivative of the cephalosporin.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0033250    penicillinase activity    Catalysis of the reaction: a penicillin + H2O = a substituted beta-amino acid derivative of the penicillin.
biological process
    GO:0030655    beta-lactam antibiotic catabolic process    The chemical reactions and pathways resulting in the breakdown of a beta-lactam antibiotic, any member of a class of natural or semisynthetic antibiotics whose characteristic feature is a strained, four-membered beta-lactam ring. They include the penicillins and many of the cephalosporins.
    GO:0046677    response to antibiotic    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0042597    periplasmic space    The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain A,B,C,D   (BLAC_MYCTO | P9WKD2)
molecular function
    GO:0008800    beta-lactamase activity    Catalysis of the reaction: a beta-lactam + H2O = a substituted beta-amino acid.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
biological process
    GO:0030655    beta-lactam antibiotic catabolic process    The chemical reactions and pathways resulting in the breakdown of a beta-lactam antibiotic, any member of a class of natural or semisynthetic antibiotics whose characteristic feature is a strained, four-membered beta-lactam ring. They include the penicillins and many of the cephalosporins.
    GO:0046677    response to antibiotic    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0042597    periplasmic space    The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

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  3vfh
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BLAC_MYCTO | P9WKD2: 2gdn 3cg5 3dwz 3iqa 3m6b 3m6h 3n6i 3n7w 3n8l 3n8r 3n8s 3nbl 3nc8 3nck 3nde 3ndg 3ny4 3vff 3zhh 4df6 4ebl 4ebn 4ebp 4jlf
        BLAC_MYCTU | P9WKD3: 2gdn 3cg5 3dwz 3iqa 3m6b 3m6h 3n6i 3n7w 3n8l 3n8r 3n8s 3nbl 3nc8 3nck 3nde 3ndg 3ny4 3vff 3zhh 4df6 4ebl 4ebn 4ebp 4jlf 4q8i 4qb8 4qhc 4x6t

(-) Related Entries Specified in the PDB File

3vff BLAC E166A CDC-OME ACYL-INTERMEDIATE COMPLEX
4ebi BLAC TEBIPENEM ACYL-INTERMEDIATE COMPLEX
4ebl BLAC E166A FAROPENEM ACYL-INTERMEDIATE COMPLEX
4ebm BLAC BIAPENEM ACYL-INTERMEDIATE COMPLEX
4ebn BLAC E166A AMOXICILLIN ACYL-INTERMEDIATE COMPLEX
4ebo BLAC E166A CEFOPERAZONE ACYL-INTERMEDIATE COMPLEX
4ebp BLAC E166A CEFOTAXIME ACYL-INTERMEDIATE COMPLEX RELATED ID: TB-RV2068C RELATED DB: TARGETTRACK