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(-) Description

Title :  CRYSTAL STRUCTURE OF CIRCUMSPOROZOITE PROTEIN ATSR DOMAIN, P43212 FORM
 
Authors :  M. B. Doud, A. C. Koksal, L. Z. Mi, G. Song, C. Lu, T. A. Springer
Date :  05 Jan 12  (Deposition) - 09 May 12  (Release) - 30 May 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.04
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  A,B,C  (1x)
Keywords :  Tsr, Atsr, Cell Invasion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. B. Doud, A. C. Koksal, L. Z. Mi, G. Song, C. Lu, T. A. Springer
Unexpected Fold In The Circumsporozoite Protein Target Of Malaria Vaccines.
Proc. Natl. Acad. Sci. Usa V. 109 7817 2012
PubMed-ID: 22547819  |  Reference-DOI: 10.1073/PNAS.1205737109

(-) Compounds

Molecule 1 - CIRCUMSPOROZOITE (CS) PROTEIN
    Chains: A, B, C
    Engineered: YES
    Expression System: PICHIA PASTORIS
    Expression System Strain: GS115
    Expression System Taxid: 644223
    Fragment: ALPHA-TSR DOMAIN (UNP RESIDUES 310-374)
    Gene: PFC0210C
    Organism Scientific: PLASMODIUM FALCIPARUM
    Organism Taxid: 36329
    Strain: 3D7

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C
Biological Unit 4 (1x): ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3VDL)

(-) Sites  (0, 0)

(no "Site" information available for 3VDL)

(-) SS Bonds  (6, 6)

Asymmetric Unit
No.Residues
1A:334 -A:369
2A:338 -A:374
3B:334 -B:369
4B:338 -B:374
5C:334 -C:369
6C:338 -C:374

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3VDL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3VDL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3VDL)

(-) Exons   (0, 0)

(no "Exon" information available for 3VDL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:71
 aligned with Q7K740_PLAF7 | Q7K740 from UniProtKB/TrEMBL  Length:397

    Alignment length:85
                                   301       311       321       331       341       351       361       371     
         Q7K740_PLAF7   292 NVDENANANSAVKNNNNEEPSDKHIKEYLNKIQNSLSTEWSPCSVTCGNGIQVRIKPGSANKPKDELDYANDIEKKICKMEKCSS 376
               SCOP domains ------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....--------------..hhhhhhhhhhhh................eeeeeee.hhhh..hhhhhhhhhheeeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------- Transcript
                 3vdl A 306 YVEF--------------EPSDKHIKEYLNKIQNSLSTEWSPCSVTCGNGIQVRIKPGSANKPKDELDYANDIEKKICKMEKCPH 376
                               |     -       311       321       331       341       351       361       371     
                             309            310                                                                  


Chain B from PDB  Type:PROTEIN  Length:71
 aligned with Q7K740_PLAF7 | Q7K740 from UniProtKB/TrEMBL  Length:397

    Alignment length:85
                                   301       311       321       331       341       351       361       371     
         Q7K740_PLAF7   292 NVDENANANSAVKNNNNEEPSDKHIKEYLNKIQNSLSTEWSPCSVTCGNGIQVRIKPGSANKPKDELDYANDIEKKICKMEKCSS 376
               SCOP domains ------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....--------------..hhhhhhhhhhhh................eeeeeee.hhhh..hhhhhhhhhheeeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------- Transcript
                 3vdl B 306 YVEF--------------EPSDKHIKEYLNKIQNSLSTEWSPCSVTCGNGIQVRIKPGSANKPKDELDYANDIEKKICKMEKCPH 376
                               |     -       311       321       331       341       351       361       371     
                             309            310                                                                  


Chain C from PDB  Type:PROTEIN  Length:71
 aligned with Q7K740_PLAF7 | Q7K740 from UniProtKB/TrEMBL  Length:397

    Alignment length:85
                                   301       311       321       331       341       351       361       371     
         Q7K740_PLAF7   292 NVDENANANSAVKNNNNEEPSDKHIKEYLNKIQNSLSTEWSPCSVTCGNGIQVRIKPGSANKPKDELDYANDIEKKICKMEKCSS 376
               SCOP domains ------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....--------------..hhhhhhhhhhhhh...............eeeeeee.hhhh..hhhhhhhhhheeeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------- Transcript
                 3vdl C 306 YVEF--------------EPSDKHIKEYLNKIQNSLSTEWSPCSVTCGNGIQVRIKPGSANKPKDELDYANDIEKKICKMEKCPH 376
                               |     -       311       321       331       341       351       361       371     
                             309            310
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3VDL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3VDL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3VDL)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (Q7K740_PLAF7 | Q7K740)
molecular function
    GO:0043395    heparan sulfate proteoglycan binding    Interacting selectively and non-covalently with a heparan sulfate proteoglycan, any proteoglycan containing heparan sulfate as the glycosaminoglycan carbohydrate unit.
    GO:0046812    host cell surface binding    Interacting selectively and non-covalently with the surface of a host cell.
biological process
    GO:0030260    entry into host cell    The invasion by an organism of a cell of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
cellular component
    GO:0046658    anchored component of plasma membrane    The component of the plasma membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group, that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.
    GO:0009986    cell surface    The external part of the cell wall and/or plasma membrane.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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  3vdl
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q7K740_PLAF7 | Q7K740: 3vdj 3vdk

(-) Related Entries Specified in the PDB File

3vdj 3vdk