3V99 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   S663D STABLE-5-LOX IN COMPLEX WITH ARACHIDONIC ACID

Authors :   N. C. Gilbert, Z. Rui, D. B. Neau, M. Waight, S. G. Bartlett, W. E. Boeglin A. R. Brash, M. E. Newcomer

Date :   23 Dec 11 (Deposition) - 02 May 12 (Release) - 15 Aug 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.25

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Lipoxygenase, Dioxygenase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. C. Gilbert, Z. Rui, D. B. Neau, M. T. Waight, S. G. Bartlett, W. E. Boeglin, A. R. Brash, M. E. Newcomer
Conversion Of Human 5-Lipoxygenase To A 15-Lipoxygenase By Point Mutation To Mimic Phosphorylation At Serine-663.
Faseb J. V. 26 3222 2012
PubMed-ID: 22516296 | Reference-DOI: 10.1096/FJ.12-205286

Molecule 1 - ARACHIDONATE 5-LIPOXYGENASE
	Chains	:	A, B
	EC Number	:	1.13.11.34
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	ALOX5, LOG5
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	5-LO, 5-LIPOXYGENASE

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 3)

No.	Name	Count	Type	Full Name
1	ACD	1	Ligand/Ion	ARACHIDONIC ACID
2	FE2	2	Ligand/Ion	FE (II) ION

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	ACD	1	Ligand/Ion	ARACHIDONIC ACID
2	FE2	1	Ligand/Ion	FE (II) ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	ACD	-1	Ligand/Ion	ARACHIDONIC ACID
2	FE2	1	Ligand/Ion	FE (II) ION

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:367 , HIS A:372 , HIS A:550 , ASN A:554 , HOH A:909 , HOH A:922	BINDING SITE FOR RESIDUE FE2 A 701
2	AC2	SOFTWARE	PHE A:177 , GLN A:363 , LEU A:607 , HOH A:909 , HOH A:922 , HOH A:931 , HOH A:953 , HOH A:977	BINDING SITE FOR RESIDUE ACD A 702
3	AC3	SOFTWARE	HIS B:367 , HIS B:372 , HIS B:550 , ASN B:554 , ILE B:673 , HOH B:967	BINDING SITE FOR RESIDUE FE2 B 701

(no "SS Bond" information available for 3V99)

Asymmetric Unit

No.	Residues
1	Asp B:298	-	Pro B:299
2	Glu B:412	-	Gln B:413

Asymmetric Unit (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_028018	E	254	K	LOX5_HUMAN	Polymorphism	2228065	A/B	E	253	K

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_028018	E	254	K	LOX5_HUMAN	Polymorphism	2228065	A	E	253	K

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_028018	E	254	K	LOX5_HUMAN	Polymorphism	2228065	B	E	253	K

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (4, 7)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PLAT	PS50095	PLAT domain profile.	LOX5_HUMAN	2-118	1	B:5-117
2	LIPOXYGENASE_3	PS51393	Lipoxygenase iron-binding catalytic domain profile.	LOX5_HUMAN	118-674	2	A:117-672 B:117-673
3	LIPOXYGENASE_1	PS00711	Lipoxygenases iron-binding region signature 1.	LOX5_HUMAN	363-377	2	A:362-376 B:362-376
4	LIPOXYGENASE_2	PS00081	Lipoxygenases iron-binding region signature 2.	LOX5_HUMAN	390-400	2	A:389-399 B:389-399

Biological Unit 1 (3, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PLAT	PS50095	PLAT domain profile.	LOX5_HUMAN	2-118	0	-
2	LIPOXYGENASE_3	PS51393	Lipoxygenase iron-binding catalytic domain profile.	LOX5_HUMAN	118-674	1	A:117-672 -
3	LIPOXYGENASE_1	PS00711	Lipoxygenases iron-binding region signature 1.	LOX5_HUMAN	363-377	1	A:362-376 -
4	LIPOXYGENASE_2	PS00081	Lipoxygenases iron-binding region signature 2.	LOX5_HUMAN	390-400	1	A:389-399 -

Biological Unit 2 (4, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PLAT	PS50095	PLAT domain profile.	LOX5_HUMAN	2-118	1	B:5-117
2	LIPOXYGENASE_3	PS51393	Lipoxygenase iron-binding catalytic domain profile.	LOX5_HUMAN	118-674	1	- B:117-673
3	LIPOXYGENASE_1	PS00711	Lipoxygenases iron-binding region signature 1.	LOX5_HUMAN	363-377	1	- B:362-376
4	LIPOXYGENASE_2	PS00081	Lipoxygenases iron-binding region signature 2.	LOX5_HUMAN	390-400	1	- B:389-399

Asymmetric Unit (14, 28)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENST00000374391	1	ENSE00001728506	chr10:45869675-45869877	203	LOX5_HUMAN	1-50	50	2	A:5-49 (gaps) B:-4-49 (gaps)	48 50
1.2	ENST00000374391	2	ENSE00001732747	chr10:45877931-45878129	199	LOX5_HUMAN	51-117	67	2	A:50-116 B:50-116	67 67
1.3	ENST00000374391	3	ENSE00001092824	chr10:45891303-45891384	82	LOX5_HUMAN	117-144	28	2	A:116-143 B:116-143	28 28
1.4	ENST00000374391	4	ENSE00001761731	chr10:45907639-45907761	123	LOX5_HUMAN	144-185	42	2	A:143-184 (gaps) B:143-184 (gaps)	42 42
1.5a	ENST00000374391	5a	ENSE00001604968	chr10:45919489-45919595	107	LOX5_HUMAN	185-221	37	2	A:184-220 (gaps) B:184-220 (gaps)	37 37
1.6	ENST00000374391	6	ENSE00001678208	chr10:45920408-45920580	173	LOX5_HUMAN	221-278	58	2	A:220-277 B:220-277	58 58
1.8	ENST00000374391	8	ENSE00001784698	chr10:45924066-45924212	147	LOX5_HUMAN	279-327	49	2	A:278-326 (gaps) B:278-326	49 49
1.9	ENST00000374391	9	ENSE00001669584	chr10:45935878-45936081	204	LOX5_HUMAN	328-395	68	2	A:327-394 B:327-394	68 68
1.10a	ENST00000374391	10a	ENSE00001092826	chr10:45936792-45936878	87	LOX5_HUMAN	396-424	29	2	A:395-413 B:395-414	19 20
1.11b	ENST00000374391	11b	ENSE00001092812	chr10:45938486-45938664	179	LOX5_HUMAN	425-484	60	2	A:430-483 B:430-483	54 54
1.12c	ENST00000374391	12c	ENSE00001191588	chr10:45938864-45938985	122	LOX5_HUMAN	484-525	42	2	A:483-524 B:483-524	42 42
1.13a	ENST00000374391	13a	ENSE00001703444	chr10:45939176-45939276	101	LOX5_HUMAN	525-558	34	2	A:524-557 B:524-557	34 34
1.13d	ENST00000374391	13d	ENSE00001092816	chr10:45939564-45939734	171	LOX5_HUMAN	559-615	57	2	A:558-614 (gaps) B:558-614	57 57
1.14	ENST00000374391	14	ENSE00001125574	chr10:45940956-45941561	606	LOX5_HUMAN	616-674	59	2	A:615-672 B:615-673	58 59

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:630
 aligned with LOX5_HUMAN | P09917 from UniProtKB/Swiss-Prot  Length:674

    Alignment length:671
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672 
           LOX5_HUMAN     3 SYTVTVATGSQWFAGTDDYIYLSLVGSAGCSEKHLLDKPFYNDFERGAVDSYDVTVDEELGEIQLVRIEKRKYWLNDDWYLKYITLKTPHGDYIEFPCYRWITGDVEVVLRDGRAKLARDDQIHILKQHRRKELETRQKQYRWMEWNPGFPLSIDAKCHKDLPRDIQFDSEKGVDFVLNYSKAMENLFINRFMHMFQSSWNDFADFEKIFVKISNTISERVMNHWQEDLMFGYQFLNGCNPVLIRRCTELPEKLPVTTEMVECSLERQLSLEQEVQQGNIFIVDFELLDGIDANKTDPCTLQFLAAPICLLYKNLANKIVPIAIQLNQIPGDENPIFLPSDAKYDWLLAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQLPAVHPIFKLLVAHVRFTIAINTKAREQLICECGLFDKANATGGGGHVQMVQRAMKDLTYASLCFPEAIKARGMESKEDIPYYFYRDDGLLVWEAIRTFTAEVVDIYYEGDQVVEEDPELQDFVNDVYVYGMRGRKSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTMRAPPPTAKGVVTIEQIVDTLPDRGRSCWHLGAVWALSQFQENELFLGMYPEEHFIEKPVKEAMARFRKNLEAIVSVIAERNKKKQLPYYYLSPDRIPNSVA 673
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..........eeeeeeee.......eee..---.......eeeeee........eeeeeeeee.......eeeeeeeee.....eeeeeeeeee....eeeee.....hhhhh.hhhhhhhhhhhhhhhhhhh.ee........ee...hhhhhhhhhh...-----.hhhhhhhhhhhh--------..hhhhhhhhhhhhh...hhhhhhhhhhh.hhhhhhhhhhhh......ee..........hhhhhh.......hhhhhhhh..eeeee........------.hhhhhh..eeeeee.....eeeeeee..........ee....hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh----------------.hhhhhhhhhhhhh.hhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh....hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhh...hhhhhhhhhhhhhhh.---.............hhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhh..... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) PLAT  PDB: - UniProt: 2-118                                                                                         ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LIPOXYGENASE_1 ------------LIPOXYGENAS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------LIPOXYGENASE_3  PDB: A:117-672 UniProt: 118-674                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              PROSITE (2)
           Transcript 1 (1) Exon 1.1  PDB: A:5-49 (gaps) UniProt: 1-50      Exon 1.2  PDB: A:50-116 UniProt: 51-117                            --------------------------Exon 1.4  PDB: A:143-184 (gaps)           -----------------------------------Exon 1.6  PDB: A:220-277 UniProt: 221-278                 Exon 1.8  PDB: A:278-326 (gaps) UniProt: 279-327 Exon 1.9  PDB: A:327-394 UniProt: 328-395                           Exon 1.10a  PDB: A:395-413   Exon 1.11b  PDB: A:430-483 UniProt: 425-484 [INCOMPLETE]    ----------------------------------------Exon 1.13a  PDB: A:524-557        Exon 1.13d  PDB: A:558-614 (gaps) UniProt: 559-615       Exon 1.14  PDB: A:615-672 UniProt: 616-674 [INCOMPLETE]    Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------------------------------------------------Exon 1.3  PDB: A:116-143    ----------------------------------------Exon 1.5a  PDB: A:184-220 (gaps)     ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.12c  PDB: A:483-524                ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 3v99 A   5 SYTVTVATGSQEHAGTDDYIYLSLVGSAGCSEKHLLDK---GSFERGAVDSYDVTVDEELGEIQLVRIEKRKYGSNDDWYLKYITLKTPHGDYIEFPCYRWITGDVEVVLRDGRAKLARDDQIHILKQHRRKELETRQKQYRWMEWNPGFPLSIDAKCHKDLPRDIQFDS-----FVLNYSKAMENLF--------QSSWNDFADFEKIFVKISNTISERVMNHWQEDLMFGYQFLNGANPVLIRRCTELPEKLPVTTEMVECSLERQLSLEQEVQQGNIFIVDFELLDGID------CTLQFLAAPICLLYKNLANKIVPIAIQLNQIPGDENPIFLPSDAKYDWLLAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQLPAVHPIFKLLVAHVRFTIAINTKAREQ----------------GGHVQMVQRAMKDLTYASLCFPEAIKARGMESKEDIPYYFYRDDGLLVWEAIRTFTAEVVDIYYEGDQVVEEDPELQDFVNDVYVYGMRGRKSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNFGQYDWASWIPNAPPTMRAPPPTAKGVVTIEQIVDTLPDRGRSCWHLGAVWALSQF---ELFLGMYPEEHFIEKPVKEAMARFRKNLEAIVSVIAERNENLQLPYYYLDPDRIPNSVA 672
                                    14        24        34       | - |      51        61        71        81        91       101       111       121       131       141       151       161       171     | 181       | -      |201       211       221       231       241       251       261       271       281       291 |     301       311       321       331       341       351       361       371       381       391       401       411 |       -       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601        |-  |    621       631       641       651       661       671 
                                                                42  43                                                                                                                             171   177         189      198                                                                                            293    300                                                                                                              413              430                                                                                                                                                                                 610 614

Chain B from PDB  Type:PROTEIN  Length:639
 aligned with LOX5_HUMAN | P09917 from UniProtKB/Swiss-Prot  Length:674

    Alignment length:678
                                1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
                                |    6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666        
           LOX5_HUMAN     - ----MPSYTVTVATGSQWFAGTDDYIYLSLVGSAGCSEKHLLDKPFYNDFERGAVDSYDVTVDEELGEIQLVRIEKRKYWLNDDWYLKYITLKTPHGDYIEFPCYRWITGDVEVVLRDGRAKLARDDQIHILKQHRRKELETRQKQYRWMEWNPGFPLSIDAKCHKDLPRDIQFDSEKGVDFVLNYSKAMENLFINRFMHMFQSSWNDFADFEKIFVKISNTISERVMNHWQEDLMFGYQFLNGCNPVLIRRCTELPEKLPVTTEMVECSLERQLSLEQEVQQGNIFIVDFELLDGIDANKTDPCTLQFLAAPICLLYKNLANKIVPIAIQLNQIPGDENPIFLPSDAKYDWLLAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQLPAVHPIFKLLVAHVRFTIAINTKAREQLICECGLFDKANATGGGGHVQMVQRAMKDLTYASLCFPEAIKARGMESKEDIPYYFYRDDGLLVWEAIRTFTAEVVDIYYEGDQVVEEDPELQDFVNDVYVYGMRGRKSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTMRAPPPTAKGVVTIEQIVDTLPDRGRSCWHLGAVWALSQFQENELFLGMYPEEHFIEKPVKEAMARFRKNLEAIVSVIAERNKKKQLPYYYLSPDRIPNSVAI 674
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee.eeeeeee..........eeeeeeee.......ee...---.......eeeeee........eeeeeeeee.......eeeeeeeee.....eeeeeeeeee.....eeee.....hhhhh.hhhhhhhhhhhhhhhhhhh.ee........ee...hhhhhhhhhh...-----.hhhhhhhhhhee....----------------.ee...hhhhhhhhhhh.hhhhhhhhhhhh......ee..........hhhhhh.......hhhhhhhh..eeeee.hhhh..........hhhhhh..eeeeee.....eeeeeee..........ee....hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh...---------------.hhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh....hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhh.hhhhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhh...... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) -----PLAT  PDB: B:5-117 UniProt: 2-118                                                                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LIPOXYGENASE_1 ------------LIPOXYGENAS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------LIPOXYGENASE_3  PDB: B:117-673 UniProt: 118-674                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               PROSITE (2)
           Transcript 1 (1) ----Exon 1.1  PDB: B:-4-49 (gaps) UniProt: 1-50       Exon 1.2  PDB: B:50-116 UniProt: 51-117                            --------------------------Exon 1.4  PDB: B:143-184 (gaps)           -----------------------------------Exon 1.6  PDB: B:220-277 UniProt: 221-278                 Exon 1.8  PDB: B:278-326 UniProt: 279-327        Exon 1.9  PDB: B:327-394 UniProt: 328-395                           Exon 1.10a  PDB: B:395-414   Exon 1.11b  PDB: B:430-483 UniProt: 425-484 [INCOMPLETE]    ----------------------------------------Exon 1.13a  PDB: B:524-557        Exon 1.13d  PDB: B:558-614 UniProt: 559-615              Exon 1.14  PDB: B:615-673 UniProt: 616-674                  Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------------------------------------------------------Exon 1.3  PDB: B:116-143    ----------------------------------------Exon 1.5a  PDB: B:184-220 (gaps)     ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.12c  PDB: B:483-524                ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 3v99 B  -8 HHHHHHSYTVTVATGSQEHAGTDDYIYLSLVGSAGCSEKHLLDK---GSFERGAVDSYDVTVDEELGEIQLVRIEKRKYGSNDDWYLKYITLKTPHGDYIEFPCYRWITGDVEVVLRDGRAKLARDDQIHILKQHRRKELETRQKQYRWMEWNPGFPLSIDAKCHKDLPRDIQFDS-----FVLNYSKAMENLFINRF----------------IFVKISNTISERVMNHWQEDLMFGYQFLNGANPVLIRRCTELPEKLPVTTEMVECSLERQLSLEQEVQQGNIFIVDFELLDGIDANKTDPCTLQFLAAPICLLYKNLANKIVPIAIQLNQIPGDENPIFLPSDAKYDWLLAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQLPAVHPIFKLLVAHVRFTIAINTKAREQL---------------GGHVQMVQRAMKDLTYASLCFPEAIKARGMESKEDIPYYFYRDDGLLVWEAIRTFTAEVVDIYYEGDQVVEEDPELQDFVNDVYVYGMRGRKSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNFGQYDWASWIPNAPPTMRAPPPTAKGVVTIEQIVDTLPDRGRSCWHLGAVWALSQFQENELFLGMYPEEHFIEKPVKEAMARFRKNLEAIVSVIAERNENLQLPYYYLDPDRIPNSVAI 673
                                 ||  8        18        28        38   |   |45        55        65        75        85        95       105       115       125       135       145       155       165     |   - |     185       | -         -    |  215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405        |-         -    |  435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645       655       665        
                                -3|                                   42  43                                                                                                                             171   177             193              210                                                                                                                                                                                                         414             430                                                                                                                                                                                                                                                   
                                  5

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3V99)

(no "CATH Domain" information available for 3V99)

(no "Pfam Domain" information available for 3V99)

Asymmetric Unit(hide GO term definitions)

Chain A,B (LOX5_HUMAN | P09917)

molecular function
	GO:0004051	arachidonate 5-lipoxygenase activity	Catalysis of the reaction: arachidonate + O2 = (6E,8Z,11Z,14Z)-(5S)-5-hydroperoxycosa-6,8,11,14-tetraenoate.
	GO:0051213	dioxygenase activity	Catalysis of an oxidation-reduction (redox) reaction in which both atoms of oxygen from one molecule of O2 are incorporated into the (reduced) product(s) of the reaction. The two atoms of oxygen may be distributed between two different products.
	GO:0005506	iron ion binding	Interacting selectively and non-covalently with iron (Fe) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0002526	acute inflammatory response	Inflammation which comprises a rapid, short-lived, relatively uniform response to acute injury or antigenic challenge and is characterized by accumulations of fluid, plasma proteins, and granulocytic leukocytes. An acute inflammatory response occurs within a matter of minutes or hours, and either resolves within a few days or becomes a chronic inflammatory response.
	GO:0019369	arachidonic acid metabolic process	The chemical reactions and pathways involving arachidonic acid, a straight chain fatty acid with 20 carbon atoms and four double bonds per molecule. Arachidonic acid is the all-Z-(5,8,11,14)-isomer.
	GO:0006954	inflammatory response	The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages.
	GO:0019370	leukotriene biosynthetic process	The chemical reactions and pathways resulting in the formation of leukotriene, a pharmacologically active substance derived from a polyunsaturated fatty acid, such as arachidonic acid.
	GO:0006691	leukotriene metabolic process	The chemical reactions and pathways involving leukotriene, a pharmacologically active substance derived from a polyunsaturated fatty acid, such as arachidonic acid.
	GO:0002540	leukotriene production involved in inflammatory response	The synthesis or release of any leukotriene following a stimulus as part of an inflammatory response, resulting in an increase in its intracellular or extracellular levels.
	GO:2001300	lipoxin metabolic process	The chemical reactions and pathways involving a lipoxin. A lipoxin is a non-classic eicosanoid and signalling molecule that has four conjugated double bonds and is derived from arachidonic acid.
	GO:0019372	lipoxygenase pathway	The chemical reactions and pathways by which an unsaturated fatty acid (such as arachidonic acid or linolenic acid) is converted to other compounds, and in which the first step is hydroperoxide formation catalyzed by lipoxygenase.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0045907	positive regulation of vasoconstriction	Any process that activates or increases the frequency, rate or extent of vasoconstriction.
	GO:0055093	response to hyperoxia	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating increased oxygen tension.
	GO:0007584	response to nutrient	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus.
	GO:0019233	sensory perception of pain	The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances. This is a neurological process.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0030425	dendrite	A neuron projection that has a short, tapering, often branched, morphology, receives and integrates signals from other neurons or from sensory stimuli, and conducts a nerve impulse towards the axon or the cell body. In most neurons, the impulse is conveyed from dendrites to axon via the cell body, but in some types of unipolar neuron, the impulse does not travel via the cell body.
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005635	nuclear envelope	The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space).
	GO:0005641	nuclear envelope lumen	The region between the two lipid bilayers of the nuclear envelope; 20-40 nm wide.
	GO:0016363	nuclear matrix	The dense fibrillar network lying on the inner side of the nuclear membrane.
	GO:0031965	nuclear membrane	Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0042383	sarcolemma	The outer membrane of a muscle cell, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers.

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	LOX5_HUMAN \| P09917	:	2abv 3o8y 3v92 3v98

Description

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