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3V99
Asym. Unit
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Asym.Unit (444 KB)
Biol.Unit 1 (219 KB)
Biol.Unit 2 (220 KB)
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(1)
Title
:
S663D STABLE-5-LOX IN COMPLEX WITH ARACHIDONIC ACID
Authors
:
N. C. Gilbert, Z. Rui, D. B. Neau, M. Waight, S. G. Bartlett, W. E. Boeglin A. R. Brash, M. E. Newcomer
Date
:
23 Dec 11 (Deposition) - 02 May 12 (Release) - 15 Aug 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Lipoxygenase, Dioxygenase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. C. Gilbert, Z. Rui, D. B. Neau, M. T. Waight, S. G. Bartlett, W. E. Boeglin, A. R. Brash, M. E. Newcomer
Conversion Of Human 5-Lipoxygenase To A 15-Lipoxygenase By Point Mutation To Mimic Phosphorylation At Serine-663.
Faseb J. V. 26 3222 2012
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: ARACHIDONIC ACID (ACDa)
2a: FE (II) ION (FE2a)
2b: FE (II) ION (FE2b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACD
1
Ligand/Ion
ARACHIDONIC ACID
2
FE2
2
Ligand/Ion
FE (II) ION
[
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:367 , HIS A:372 , HIS A:550 , ASN A:554 , HOH A:909 , HOH A:922
BINDING SITE FOR RESIDUE FE2 A 701
2
AC2
SOFTWARE
PHE A:177 , GLN A:363 , LEU A:607 , HOH A:909 , HOH A:922 , HOH A:931 , HOH A:953 , HOH A:977
BINDING SITE FOR RESIDUE ACD A 702
3
AC3
SOFTWARE
HIS B:367 , HIS B:372 , HIS B:550 , ASN B:554 , ILE B:673 , HOH B:967
BINDING SITE FOR RESIDUE FE2 B 701
[
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_028018 (E253K, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_028018
E
254
K
LOX5_HUMAN
Polymorphism
2228065
A/B
E
253
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(4, 7)
Info
All PROSITE Patterns/Profiles
1: PLAT (B:5-117)
2: LIPOXYGENASE_3 (A:117-672,B:117-673)
3: LIPOXYGENASE_1 (A:362-376,B:362-376)
4: LIPOXYGENASE_2 (A:389-399,B:389-399)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PLAT
PS50095
PLAT domain profile.
LOX5_HUMAN
2-118
1
B:5-117
2
LIPOXYGENASE_3
PS51393
Lipoxygenase iron-binding catalytic domain profile.
LOX5_HUMAN
118-674
2
A:117-672
B:117-673
3
LIPOXYGENASE_1
PS00711
Lipoxygenases iron-binding region signature 1.
LOX5_HUMAN
363-377
2
A:362-376
B:362-376
4
LIPOXYGENASE_2
PS00081
Lipoxygenases iron-binding region signature 2.
LOX5_HUMAN
390-400
2
A:389-399
B:389-399
[
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Exons
(14, 28)
Info
All Exons
Exon 1.1 (A:5-49 (gaps) | B:-4-49 (gaps))
Exon 1.2 (A:50-116 | B:50-116)
Exon 1.3 (A:116-143 | B:116-143)
Exon 1.4 (A:143-184 (gaps) | B:143-184 (gaps...)
Exon 1.5a (A:184-220 (gaps) | B:184-220 (gaps...)
Exon 1.6 (A:220-277 | B:220-277)
Exon 1.8 (A:278-326 (gaps) | B:278-326)
Exon 1.9 (A:327-394 | B:327-394)
Exon 1.10a (A:395-413 | B:395-414)
Exon 1.11b (A:430-483 | B:430-483)
Exon 1.12c (A:483-524 | B:483-524)
Exon 1.13a (A:524-557 | B:524-557)
Exon 1.13d (A:558-614 (gaps) | B:558-614)
Exon 1.14 (A:615-672 | B:615-673)
View:
Select:
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All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5a
06: Boundary 1.5a/1.6
07: Boundary 1.6/1.8
08: Boundary 1.8/1.9
09: Boundary 1.9/1.10a
10: Boundary 1.10a/1.11b
11: Boundary 1.11b/1.12c
12: Boundary 1.12c/1.13a
13: Boundary 1.13a/1.13d
14: Boundary 1.13d/1.14
15: Boundary 1.14/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000374391
1
ENSE00001728506
chr10:
45869675-45869877
203
LOX5_HUMAN
1-50
50
2
A:5-49 (gaps)
B:-4-49 (gaps)
48
50
1.2
ENST00000374391
2
ENSE00001732747
chr10:
45877931-45878129
199
LOX5_HUMAN
51-117
67
2
A:50-116
B:50-116
67
67
1.3
ENST00000374391
3
ENSE00001092824
chr10:
45891303-45891384
82
LOX5_HUMAN
117-144
28
2
A:116-143
B:116-143
28
28
1.4
ENST00000374391
4
ENSE00001761731
chr10:
45907639-45907761
123
LOX5_HUMAN
144-185
42
2
A:143-184 (gaps)
B:143-184 (gaps)
42
42
1.5a
ENST00000374391
5a
ENSE00001604968
chr10:
45919489-45919595
107
LOX5_HUMAN
185-221
37
2
A:184-220 (gaps)
B:184-220 (gaps)
37
37
1.6
ENST00000374391
6
ENSE00001678208
chr10:
45920408-45920580
173
LOX5_HUMAN
221-278
58
2
A:220-277
B:220-277
58
58
1.8
ENST00000374391
8
ENSE00001784698
chr10:
45924066-45924212
147
LOX5_HUMAN
279-327
49
2
A:278-326 (gaps)
B:278-326
49
49
1.9
ENST00000374391
9
ENSE00001669584
chr10:
45935878-45936081
204
LOX5_HUMAN
328-395
68
2
A:327-394
B:327-394
68
68
1.10a
ENST00000374391
10a
ENSE00001092826
chr10:
45936792-45936878
87
LOX5_HUMAN
396-424
29
2
A:395-413
B:395-414
19
20
1.11b
ENST00000374391
11b
ENSE00001092812
chr10:
45938486-45938664
179
LOX5_HUMAN
425-484
60
2
A:430-483
B:430-483
54
54
1.12c
ENST00000374391
12c
ENSE00001191588
chr10:
45938864-45938985
122
LOX5_HUMAN
484-525
42
2
A:483-524
B:483-524
42
42
1.13a
ENST00000374391
13a
ENSE00001703444
chr10:
45939176-45939276
101
LOX5_HUMAN
525-558
34
2
A:524-557
B:524-557
34
34
1.13d
ENST00000374391
13d
ENSE00001092816
chr10:
45939564-45939734
171
LOX5_HUMAN
559-615
57
2
A:558-614 (gaps)
B:558-614
57
57
1.14
ENST00000374391
14
ENSE00001125574
chr10:
45940956-45941561
606
LOX5_HUMAN
616-674
59
2
A:615-672
B:615-673
58
59
[
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SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
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all CATH domains
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (444 KB)
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