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(-) Description

Title :  CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS BIOTIN PROTEIN LIGASE IN COMPLEX WITH INHIBITOR
 
Authors :  M. Y. Yap, N. R. Pendini
Date :  21 Dec 11  (Deposition) - 26 Dec 12  (Release) - 17 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.61
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Biotin, Metabolism, Biotin Carboxyl Carrier Protein, Ligase-Ligase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. P. Soares Da Costa, W. Tieu, M. Y. Yap, N. R. Pendini, S. W. Polyak, D. Sejer Pedersen, R. Morona, J. D. Turnidge, J. C. Wallace, M. C. Wilce, G. W. Booker, A. D. Abell
Selective Inhibition Of Biotin Protein Ligase From Staphylococcus Aureus.
J. Biol. Chem. V. 287 17823 2012
PubMed-ID: 22437830  |  Reference-DOI: 10.1074/JBC.M112.356576

(-) Compounds

Molecule 1 - BIOTIN LIGASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: SAOG_00031
    Organism Scientific: STAPHYLOCOCCUS AUREUS
    Organism Taxid: 553596
    Strain: A9781

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
132G1Ligand/Ion(3AS,4S,6AR)-4-(5-{1-[4-(6-AMINO-9H-PURIN-9-YL)BUTYL]-1H-1,2,3-TRIAZOL-4-YL}PENTYL)TETRAHYDRO-1H-THIENO[3,4-D]IMIDAZOL-2(3H)-ONE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
132G2Ligand/Ion(3AS,4S,6AR)-4-(5-{1-[4-(6-AMINO-9H-PURIN-9-YL)BUTYL]-1H-1,2,3-TRIAZOL-4-YL}PENTYL)TETRAHYDRO-1H-THIENO[3,4-D]IMIDAZOL-2(3H)-ONE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:93 , THR A:94 , GLN A:95 , GLN A:116 , GLY A:119 , ARG A:120 , GLY A:121 , ARG A:122 , ARG A:125 , HIS A:126 , TRP A:127 , SER A:128 , MET A:137 , ASP A:180 , LYS A:187 , GLY A:190 , ILE A:209 , GLY A:210 , ASN A:212 , ILE A:224 , HOH A:628BINDING SITE FOR RESIDUE 32G A 500

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3V7R)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Lys A:16 -Pro A:17
2Trp A:177 -Pro A:178

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3V7R)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3V7R)

(-) Exons   (0, 0)

(no "Exon" information available for 3V7R)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:322
                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhh..hhhhhhhhhhhhhhh..eeeee...eeeeee.....hhhhhhhhhhh.....eeeeeeee.hhhhhhhhhh......eeeeeeee....hhhhh........eeeeeeee....hhhhhhhhhhhhhhhhhhhhhh.....eeee...eeee..eeeeeeeeeeeee..eeeeeeeeeeee...hhhhh...hhhhh..hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeee..eeeeeeeeee.....eeeee....eeee...eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v7r A   2 SKYSQDVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLKLEGCKIDSVNHKGHLLQQLPDIWYQGIIDQYTKSSALFDFSEVYDSIDSTQLAAKKSLVGNQSSFFILSDEQTKGRGRFNRHWSSSKGQGLWMSVVLRPNVAFSMISKFNLFIALGIRDAIQHFSQDEVKVKWPNDIYIDNGKVCGFLTEMVANNDGIEAIICGIGINLTQQLENFDESIRHRATSIQLHDKNKLDRYQFLERLLQEIEKRYNQFLTLPFSEIREEYIAASNIWNRTLLFTENDKQFKGQAIDLDYDGYLIVRDEAGESHRLISADIDF 323
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3V7R)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3V7R)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3V7R)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3V7R)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 3V7R)

(-) Related Entries Specified in the PDB File

1hxd CRYSTAL STRUCTURE OF E. COLI BIOTIN REPRESSOR WITH BOUND BIOTIN
2cgh CRYSTAL STRUCTURE OF BIOTIN LIGASE FROM MYCOBACTERIUM TUBERCULOSIS
2eay CRYSTAL STRUCTURE OF BIOTIN PROTEIN LIGASE FROM AQUIFEX AEOLICUS
2ewn ECOLI BIOTIN REPRESSOR WITH CO-REPRESSOR ANALOG
3v7c
3v7s
3v8j
3v8k
3v8l