3V58 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE B-PHYCOERYTHRIN FROM THE RED ALGAE PORPHYRIDIUM CRUENTUM AT PH5

Authors :   A. Camara-Artigas

Date :   16 Dec 11 (Deposition) - 03 Oct 12 (Release) - 03 Oct 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.85

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (3x)
Biol. Unit 2: C,D  (3x)

Keywords :   Globin-Like, Globin Fold, Photosynthetic Antenna, Photosynthesis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Camara-Artigas, J. Bacarizo, M. Andujar-Sanchez, E. Ortiz-Salmeron, C. Mesa-Valle, C. Cuadri, J. M. Martin-Garcia, S. Martinez-Rodriguez, T. Mazzuca-Sobczuk, M. J. Ibanez, J. P. Allen
Ph-Dependent Structural Conformations Of B-Phycoerythrin From Porphyridium Cruentum
Febs J. V. 279 3680 2012
PubMed-ID: 22863205 | Reference-DOI: 10.1111/J.1742-4658.2012.08730.X

Molecule 1 - PHYCOERYTHRIN ALPHA SUBUNIT
	Chains	:	A, C
	Organism Common	:	RED ALGA
	Organism Scientific	:	PORPHYRIDIUM PURPUREUM
	Organism Taxid	:	35688

Molecule 2 - PHYCOERYTHRIN BETA SUBUNIT
	Chains	:	B, D
	Organism Common	:	RED ALGA
	Organism Scientific	:	PORPHYRIDIUM PURPUREUM
	Organism Taxid	:	35688

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (3x)	:	A	B
Biological Unit 2 (3x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 13)

No.	Name	Count	Type	Full Name
1	MEN	2	Mod. Amino Acid	N-METHYL ASPARAGINE
2	PEB	10	Ligand/Ion	PHYCOERYTHROBILIN
3	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 21)

No.	Name	Count	Type	Full Name
1	MEN	3	Mod. Amino Acid	N-METHYL ASPARAGINE
2	PEB	15	Ligand/Ion	PHYCOERYTHROBILIN
3	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 18)

No.	Name	Count	Type	Full Name
1	MEN	3	Mod. Amino Acid	N-METHYL ASPARAGINE
2	PEB	15	Ligand/Ion	PHYCOERYTHROBILIN
3	SO4	-1	Ligand/Ion	SULFATE ION

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	PHE A:60 , ALA A:72 , GLY A:73 , LYS A:78 , LYS A:81 , CYS A:82 , ARG A:84 , ASP A:85 , HIS A:88 , TRP A:108 , TYR A:117 , LEU A:120 , LEU A:122 , PRO A:123 , ALA A:126 , TYR A:127 , HOH A:246 , HOH A:282 , HOH A:517 , ILE B:67 , THR B:75 , ASN B:76 , MET B:79 , HOH B:366	BINDING SITE FOR RESIDUE PEB A 201
02	AC2	SOFTWARE	LYS A:43 , ASN A:47 , ALA A:50 , VAL A:51 , GLU A:54 , ARG A:137 , CYS A:139 , ARG A:142 , ASP A:143 , MET A:144 , HOH A:167 , HOH A:196 , HOH A:200 , HOH A:376 , THR B:143 , GLY B:156 , ASP B:157 , CYS B:158 , THR B:159 , PEB B:204 , HOH B:209	BINDING SITE FOR RESIDUE PEB A 202
03	AC3	SOFTWARE	LEU A:122 , PRO A:123 , THR A:124 , HOH A:170 , PRO C:123 , THR C:124 , HOH C:177	BINDING SITE FOR RESIDUE SO4 A 165
04	AC4	SOFTWARE	MET B:59 , MEN B:72 , CYS B:73 , ARG B:77 , ARG B:78 , ALA B:81 , CYS B:82 , ASP B:85 , ILE B:88 , ARG B:108 , LEU B:113 , LEU B:120 , VAL B:122 , PRO B:123 , SER B:126 , SER B:127 , HOH B:207 , HOH B:280 , HOH B:451	BINDING SITE FOR RESIDUE PEB B 203
05	AC5	SOFTWARE	GLU A:25 , GLN A:28 , PEB A:202 , ASN B:35 , LYS B:36 , LEU B:38 , ASP B:39 , ILE B:142 , ASN B:144 , PHE B:153 , ALA B:154 , ALA B:155 , GLY B:156 , CYS B:158 , HOH B:185 , HOH B:198 , HOH B:234 , HOH B:357 , HOH B:375 , HOH B:380 , HOH B:381 , HOH B:540 , ARG C:33 , GLN C:147	BINDING SITE FOR RESIDUE PEB B 204
06	AC6	SOFTWARE	ASN B:47 , CYS B:50 , ASP B:54 , GLY B:58 , CYS B:61 , GLU B:62 , ARG B:129 , ALA B:136 , GLN B:137 , PHE B:141 , ALA B:146 , THR B:147 , GLU B:148 , ARG B:149 , HOH B:189 , HOH B:199 , HOH B:216 , HOH B:245 , HOH B:414	BINDING SITE FOR RESIDUE PEB B 205
07	AC7	SOFTWARE	PHE C:60 , LEU C:66 , ALA C:72 , GLY C:73 , LYS C:78 , LYS C:81 , CYS C:82 , ARG C:84 , ASP C:85 , HIS C:88 , TYR C:89 , TRP C:108 , TYR C:117 , LEU C:120 , LEU C:122 , PRO C:123 , ALA C:126 , TYR C:127 , HOH C:197 , HOH C:203 , HOH C:254 , HOH C:438 , ILE D:67 , TYR D:74 , THR D:75 , ASN D:76 , MET D:79	BINDING SITE FOR RESIDUE PEB C 206
08	AC8	SOFTWARE	LYS C:43 , ASN C:47 , ALA C:50 , VAL C:51 , GLU C:54 , ARG C:137 , LEU C:138 , CYS C:139 , ARG C:142 , ASP C:143 , HOH C:182 , HOH C:216 , HOH C:231 , THR D:147 , GLU D:148	BINDING SITE FOR RESIDUE PEB C 207
09	AC9	SOFTWARE	MET D:59 , MEN D:72 , CYS D:73 , ARG D:77 , ARG D:78 , ALA D:81 , CYS D:82 , ARG D:84 , ASP D:85 , ILE D:88 , ARG D:108 , LEU D:120 , VAL D:122 , PRO D:123 , SER D:126 , SER D:127 , HOH D:205 , HOH D:292 , HOH D:350 , HOH D:402	BINDING SITE FOR RESIDUE PEB D 208
10	BC1	SOFTWARE	ARG A:33 , GLN A:147 , GLU C:25 , GLN C:28 , ASN D:35 , LYS D:36 , LEU D:38 , ASP D:39 , ILE D:142 , THR D:143 , PHE D:153 , ALA D:154 , ALA D:155 , GLY D:156 , CYS D:158 , HOH D:211 , HOH D:232 , HOH D:313 , HOH D:365 , HOH D:370 , HOH D:400 , HOH D:473 , HOH D:531	BINDING SITE FOR RESIDUE PEB D 209
11	BC2	SOFTWARE	ASN D:47 , CYS D:50 , ASP D:54 , GLY D:58 , CYS D:61 , GLU D:62 , ARG D:129 , ALA D:136 , GLN D:137 , PHE D:141 , ALA D:146 , THR D:147 , GLU D:148 , ARG D:149 , HOH D:179 , HOH D:202 , HOH D:219 , HOH D:260 , HOH D:498	BINDING SITE FOR RESIDUE PEB D 210

(no "SS Bond" information available for 3V58)

Asymmetric Unit

No.	Residues
1	Val A:140	-	Pro A:141
2	Val C:140	-	Pro C:141

(no "SAP(SNP)/Variant" information available for 3V58)

(no "PROSITE Motif" information available for 3V58)

(no "Exon" information available for 3V58)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:164
 aligned with E2IH77_PORPP | E2IH77 from UniProtKB/TrEMBL  Length:164

    Alignment length:164
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160    
         E2IH77_PORPP     1 MKSVITTVVSAADAAGRFPSNSDLESIQGNIQRSAARLEAAEKLAGNHEAVVKEAGDACFAKYAYLKNPGEAGENQEKINKCYRDVDHYMRLVNYCLVVGGTGPLDEWGIAGAREVYRTLNLPTSAYVASIAYTRDRLCVPRDMSAQAGVEFSAYLDYLINALS 164
               SCOP domains d3v58a_ A: automated matches                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhh..hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v58 A   1 MKSVITTVVSAADAAGRFPSNSDLESIQGNIQRSAARLEAAEKLAGNHEAVVKEAGDACFAKYAYLKNPGEAGENQEKINKCYRDVDHYMRLVNYCLVVGGTGPLDEWGIAGAREVYRTLNLPTSAYVASIAYTRDRLCVPRDMSAQAGVEFSAYLDYLINALS 164
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160

Chain A from PDB  Type:PROTEIN  Length:164
 aligned with PHEA_PORPP | P11392 from UniProtKB/Swiss-Prot  Length:164

    Alignment length:164
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160    
           PHEA_PORPP     1 MKSVITTVVSAADAAGRFPSNSDLESIQGNIQRSAARLEAAEKLAGNHEAVVKEAGDACFAKYAYLKNPGEAGENQEKINKCYRDVDHYMRLVNYDLVVGGTGPLDEWGIAGAREVYRTLNLPTSAYVASIAYTRDRLCVPRDMSAQAGVEFSAYLDYLINALS 164
               SCOP domains d3v58a_ A: automated matches                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhh..hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v58 A   1 MKSVITTVVSAADAAGRFPSNSDLESIQGNIQRSAARLEAAEKLAGNHEAVVKEAGDACFAKYAYLKNPGEAGENQEKINKCYRDVDHYMRLVNYCLVVGGTGPLDEWGIAGAREVYRTLNLPTSAYVASIAYTRDRLCVPRDMSAQAGVEFSAYLDYLINALS 164
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160

Chain B from PDB  Type:PROTEIN  Length:177
 aligned with E2IH76_PORPP | E2IH76 from UniProtKB/TrEMBL  Length:177

    Alignment length:177
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       
         E2IH76_PORPP     1 MLDAFSRVVVNSDAKAAYVGGSDLQALKSFIADGNKRLDAVNSIVSNASCMVSDAVSGMICENPGLISPGGNCYTNRRMAACLRDGEIILRYVSYALLAGDASVLEDRCLNGLKETYIALGVPTNSSIRAVSIMKAQAVAFITNTATERKMSFAAGDCTSLASEVASYFDRVGAAIS 177
               SCOP domains d3v58b_ B: automated matches                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v58 B   1 MLDAFSRVVVNSDAKAAYVGGSDLQALKSFIADGNKRLDAVNSIVSNASCMVSDAVSGMICENPGLISPGGnCYTNRRMAACLRDGEIILRYVSYALLAGDASVLEDRCLNGLKETYIALGVPTNSSIRAVSIMKAQAVAFITNTATERKMSFAAGDCTSLASEVASYFDRVGAAIS 177
                                    10        20        30        40        50        60        70 |      80        90       100       110       120       130       140       150       160       170       
                                                                                                  72-MEN

Chain B from PDB  Type:PROTEIN  Length:177
 aligned with PHEB_PORPP | P11393 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:177
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       
           PHEB_PORPP     1 MLDAFSRVVVNSDAKAAYVGGSDLQALKSFIADGNKRLDAVNSIVSNASCMVSDAVSGMICENPGLISPGGNCYTNRRMAACLRDGEIILRYVSYALLAGDASVLEDRCLNGLKETYIALGVPTNSSIRAVSIMKAQAVAFITNTATERKMSFAAGDCTSLASEVASYFDRVGAAIS 177
               SCOP domains d3v58b_ B: automated matches                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v58 B   1 MLDAFSRVVVNSDAKAAYVGGSDLQALKSFIADGNKRLDAVNSIVSNASCMVSDAVSGMICENPGLISPGGnCYTNRRMAACLRDGEIILRYVSYALLAGDASVLEDRCLNGLKETYIALGVPTNSSIRAVSIMKAQAVAFITNTATERKMSFAAGDCTSLASEVASYFDRVGAAIS 177
                                    10        20        30        40        50        60        70 |      80        90       100       110       120       130       140       150       160       170       
                                                                                                  72-MEN

Chain C from PDB  Type:PROTEIN  Length:164
 aligned with E2IH77_PORPP | E2IH77 from UniProtKB/TrEMBL  Length:164

    Alignment length:164
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160    
         E2IH77_PORPP     1 MKSVITTVVSAADAAGRFPSNSDLESIQGNIQRSAARLEAAEKLAGNHEAVVKEAGDACFAKYAYLKNPGEAGENQEKINKCYRDVDHYMRLVNYCLVVGGTGPLDEWGIAGAREVYRTLNLPTSAYVASIAYTRDRLCVPRDMSAQAGVEFSAYLDYLINALS 164
               SCOP domains d3v58c_ C: automated matches                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhh..hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v58 C   1 MKSVITTVVSAADAAGRFPSNSDLESIQGNIQRSAARLEAAEKLAGNHEAVVKEAGDACFAKYAYLKNPGEAGENQEKINKCYRDVDHYMRLVNYCLVVGGTGPLDEWGIAGAREVYRTLNLPTSAYVASIAYTRDRLCVPRDMSAQAGVEFSAYLDYLINALS 164
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160

Chain C from PDB  Type:PROTEIN  Length:164
 aligned with PHEA_PORPP | P11392 from UniProtKB/Swiss-Prot  Length:164

    Alignment length:164
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160    
           PHEA_PORPP     1 MKSVITTVVSAADAAGRFPSNSDLESIQGNIQRSAARLEAAEKLAGNHEAVVKEAGDACFAKYAYLKNPGEAGENQEKINKCYRDVDHYMRLVNYDLVVGGTGPLDEWGIAGAREVYRTLNLPTSAYVASIAYTRDRLCVPRDMSAQAGVEFSAYLDYLINALS 164
               SCOP domains d3v58c_ C: automated matches                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhh..hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v58 C   1 MKSVITTVVSAADAAGRFPSNSDLESIQGNIQRSAARLEAAEKLAGNHEAVVKEAGDACFAKYAYLKNPGEAGENQEKINKCYRDVDHYMRLVNYCLVVGGTGPLDEWGIAGAREVYRTLNLPTSAYVASIAYTRDRLCVPRDMSAQAGVEFSAYLDYLINALS 164
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160

Chain D from PDB  Type:PROTEIN  Length:177
 aligned with E2IH76_PORPP | E2IH76 from UniProtKB/TrEMBL  Length:177

    Alignment length:177
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       
         E2IH76_PORPP     1 MLDAFSRVVVNSDAKAAYVGGSDLQALKSFIADGNKRLDAVNSIVSNASCMVSDAVSGMICENPGLISPGGNCYTNRRMAACLRDGEIILRYVSYALLAGDASVLEDRCLNGLKETYIALGVPTNSSIRAVSIMKAQAVAFITNTATERKMSFAAGDCTSLASEVASYFDRVGAAIS 177
               SCOP domains d3v58d_ D: automated matches                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v58 D   1 MLDAFSRVVVNSDAKAAYVGGSDLQALKSFIADGNKRLDAVNSIVSNASCMVSDAVSGMICENPGLISPGGnCYTNRRMAACLRDGEIILRYVSYALLAGDASVLEDRCLNGLKETYIALGVPTNSSIRAVSIMKAQAVAFITNTATERKMSFAAGDCTSLASEVASYFDRVGAAIS 177
                                    10        20        30        40        50        60        70 |      80        90       100       110       120       130       140       150       160       170       
                                                                                                  72-MEN

Chain D from PDB  Type:PROTEIN  Length:177
 aligned with PHEB_PORPP | P11393 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:177
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       
           PHEB_PORPP     1 MLDAFSRVVVNSDAKAAYVGGSDLQALKSFIADGNKRLDAVNSIVSNASCMVSDAVSGMICENPGLISPGGNCYTNRRMAACLRDGEIILRYVSYALLAGDASVLEDRCLNGLKETYIALGVPTNSSIRAVSIMKAQAVAFITNTATERKMSFAAGDCTSLASEVASYFDRVGAAIS 177
               SCOP domains d3v58d_ D: automated matches                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v58 D   1 MLDAFSRVVVNSDAKAAYVGGSDLQALKSFIADGNKRLDAVNSIVSNASCMVSDAVSGMICENPGLISPGGnCYTNRRMAACLRDGEIILRYVSYALLAGDASVLEDRCLNGLKETYIALGVPTNSSIRAVSIMKAQAVAFITNTATERKMSFAAGDCTSLASEVASYFDRVGAAIS 177
                                    10        20        30        40        50        60        70 |      80        90       100       110       120       130       140       150       160       170       
                                                                                                  72-MEN

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Globin-like (1351)

Superfamily: Globin-like (1308)

Family: Phycocyanin-like phycobilisome proteins (65)

Protein domain: automated matches (19)

Red alga (Porphyridium purpureum) [TaxId: 35688] (2)

1a	d3v58a_	A:
1b	d3v58b_	B:
1c	d3v58c_	C:
1d	d3v58d_	D:

(no "CATH Domain" information available for 3V58)

(no "Pfam Domain" information available for 3V58)

Asymmetric Unit(hide GO term definitions)

Chain A,C (E2IH77_PORPP | E2IH77)

biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0015979	photosynthesis	The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
	GO:0018298	protein-chromophore linkage	The covalent or noncovalent attachment of a chromophore to a protein.
cellular component
	GO:0009507	chloroplast	A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
	GO:0030089	phycobilisome	Any of the granules, approximately 32 nm x 48 nm and consisting of highly aggregated phycobiliproteins, that are attached in arrays to the external face of a thylakoid membrane in algae of the phyla Cyanophyta and Rhodophyta, where they function as light-harvesting devices in photosynthesis. Excitation energy in the phycobilisome flows in the sequence: phycoerythrin, phycocyanin, allophycocyanin before passing to the antenna chlorophyll of photosystem II.
	GO:0009536	plastid	Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.

Chain A,C (PHEA_PORPP | P11392)

biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0015979	photosynthesis	The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
	GO:0018298	protein-chromophore linkage	The covalent or noncovalent attachment of a chromophore to a protein.
cellular component
	GO:0009507	chloroplast	A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
	GO:0009535	chloroplast thylakoid membrane	The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0030089	phycobilisome	Any of the granules, approximately 32 nm x 48 nm and consisting of highly aggregated phycobiliproteins, that are attached in arrays to the external face of a thylakoid membrane in algae of the phyla Cyanophyta and Rhodophyta, where they function as light-harvesting devices in photosynthesis. Excitation energy in the phycobilisome flows in the sequence: phycoerythrin, phycocyanin, allophycocyanin before passing to the antenna chlorophyll of photosystem II.
	GO:0009536	plastid	Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.
	GO:0009579	thylakoid	A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation.

Chain B,D (E2IH76_PORPP | E2IH76)

biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0015979	photosynthesis	The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
	GO:0018298	protein-chromophore linkage	The covalent or noncovalent attachment of a chromophore to a protein.
cellular component
	GO:0009507	chloroplast	A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
	GO:0030089	phycobilisome	Any of the granules, approximately 32 nm x 48 nm and consisting of highly aggregated phycobiliproteins, that are attached in arrays to the external face of a thylakoid membrane in algae of the phyla Cyanophyta and Rhodophyta, where they function as light-harvesting devices in photosynthesis. Excitation energy in the phycobilisome flows in the sequence: phycoerythrin, phycocyanin, allophycocyanin before passing to the antenna chlorophyll of photosystem II.
	GO:0009536	plastid	Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.

Chain B,D (PHEB_PORPP | P11393)

biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0015979	photosynthesis	The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
	GO:0018298	protein-chromophore linkage	The covalent or noncovalent attachment of a chromophore to a protein.
cellular component
	GO:0009507	chloroplast	A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
	GO:0009535	chloroplast thylakoid membrane	The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0030089	phycobilisome	Any of the granules, approximately 32 nm x 48 nm and consisting of highly aggregated phycobiliproteins, that are attached in arrays to the external face of a thylakoid membrane in algae of the phyla Cyanophyta and Rhodophyta, where they function as light-harvesting devices in photosynthesis. Excitation energy in the phycobilisome flows in the sequence: phycoerythrin, phycocyanin, allophycocyanin before passing to the antenna chlorophyll of photosystem II.
	GO:0009536	plastid	Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.
	GO:0009579	thylakoid	A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation.

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	Cis Peptide Bonds
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		Val C:140 - Pro C:141	[ RasMol ]

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	3v58
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Access by UniProt ID/Accession number
	E2IH76_PORPP \| E2IH76
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	E2IH77_PORPP \| E2IH77
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	PHEA_PORPP \| P11392
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		Protein-protein Interaction	:	DIP
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	PHEB_PORPP \| P11393
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	E2IH76_PORPP \| E2IH76
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	PHEA_PORPP \| P11392
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	PHEB_PORPP \| P11393
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UniProtKB/Swiss-Prot
	E2IH76_PORPP \| E2IH76	:	3v57
	E2IH77_PORPP \| E2IH77	:	3v57
	PHEA_PORPP \| P11392	:	3v57
	PHEB_PORPP \| P11393	:	3v57

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 13)

Sites (11, 11)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 4)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (9, 30)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File