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3V58
Asym. Unit
Info
Asym.Unit (130 KB)
Biol.Unit 1 (183 KB)
Biol.Unit 2 (183 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE B-PHYCOERYTHRIN FROM THE RED ALGAE PORPHYRIDIUM CRUENTUM AT PH5
Authors
:
A. Camara-Artigas
Date
:
16 Dec 11 (Deposition) - 03 Oct 12 (Release) - 03 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (3x)
Biol. Unit 2: C,D (3x)
Keywords
:
Globin-Like, Globin Fold, Photosynthetic Antenna, Photosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Camara-Artigas, J. Bacarizo, M. Andujar-Sanchez, E. Ortiz-Salmeron, C. Mesa-Valle, C. Cuadri, J. M. Martin-Garcia, S. Martinez-Rodriguez, T. Mazzuca-Sobczuk, M. J. Ibanez, J. P. Allen
Ph-Dependent Structural Conformations Of B-Phycoerythrin From Porphyridium Cruentum
Febs J. V. 279 3680 2012
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Hetero Components
(3, 13)
Info
All Hetero Components
1a: N-METHYL ASPARAGINE (MENa)
1b: N-METHYL ASPARAGINE (MENb)
2a: PHYCOERYTHROBILIN (PEBa)
2b: PHYCOERYTHROBILIN (PEBb)
2c: PHYCOERYTHROBILIN (PEBc)
2d: PHYCOERYTHROBILIN (PEBd)
2e: PHYCOERYTHROBILIN (PEBe)
2f: PHYCOERYTHROBILIN (PEBf)
2g: PHYCOERYTHROBILIN (PEBg)
2h: PHYCOERYTHROBILIN (PEBh)
2i: PHYCOERYTHROBILIN (PEBi)
2j: PHYCOERYTHROBILIN (PEBj)
3a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MEN
2
Mod. Amino Acid
N-METHYL ASPARAGINE
2
PEB
10
Ligand/Ion
PHYCOERYTHROBILIN
3
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:60 , ALA A:72 , GLY A:73 , LYS A:78 , LYS A:81 , CYS A:82 , ARG A:84 , ASP A:85 , HIS A:88 , TRP A:108 , TYR A:117 , LEU A:120 , LEU A:122 , PRO A:123 , ALA A:126 , TYR A:127 , HOH A:246 , HOH A:282 , HOH A:517 , ILE B:67 , THR B:75 , ASN B:76 , MET B:79 , HOH B:366
BINDING SITE FOR RESIDUE PEB A 201
02
AC2
SOFTWARE
LYS A:43 , ASN A:47 , ALA A:50 , VAL A:51 , GLU A:54 , ARG A:137 , CYS A:139 , ARG A:142 , ASP A:143 , MET A:144 , HOH A:167 , HOH A:196 , HOH A:200 , HOH A:376 , THR B:143 , GLY B:156 , ASP B:157 , CYS B:158 , THR B:159 , PEB B:204 , HOH B:209
BINDING SITE FOR RESIDUE PEB A 202
03
AC3
SOFTWARE
LEU A:122 , PRO A:123 , THR A:124 , HOH A:170 , PRO C:123 , THR C:124 , HOH C:177
BINDING SITE FOR RESIDUE SO4 A 165
04
AC4
SOFTWARE
MET B:59 , MEN B:72 , CYS B:73 , ARG B:77 , ARG B:78 , ALA B:81 , CYS B:82 , ASP B:85 , ILE B:88 , ARG B:108 , LEU B:113 , LEU B:120 , VAL B:122 , PRO B:123 , SER B:126 , SER B:127 , HOH B:207 , HOH B:280 , HOH B:451
BINDING SITE FOR RESIDUE PEB B 203
05
AC5
SOFTWARE
GLU A:25 , GLN A:28 , PEB A:202 , ASN B:35 , LYS B:36 , LEU B:38 , ASP B:39 , ILE B:142 , ASN B:144 , PHE B:153 , ALA B:154 , ALA B:155 , GLY B:156 , CYS B:158 , HOH B:185 , HOH B:198 , HOH B:234 , HOH B:357 , HOH B:375 , HOH B:380 , HOH B:381 , HOH B:540 , ARG C:33 , GLN C:147
BINDING SITE FOR RESIDUE PEB B 204
06
AC6
SOFTWARE
ASN B:47 , CYS B:50 , ASP B:54 , GLY B:58 , CYS B:61 , GLU B:62 , ARG B:129 , ALA B:136 , GLN B:137 , PHE B:141 , ALA B:146 , THR B:147 , GLU B:148 , ARG B:149 , HOH B:189 , HOH B:199 , HOH B:216 , HOH B:245 , HOH B:414
BINDING SITE FOR RESIDUE PEB B 205
07
AC7
SOFTWARE
PHE C:60 , LEU C:66 , ALA C:72 , GLY C:73 , LYS C:78 , LYS C:81 , CYS C:82 , ARG C:84 , ASP C:85 , HIS C:88 , TYR C:89 , TRP C:108 , TYR C:117 , LEU C:120 , LEU C:122 , PRO C:123 , ALA C:126 , TYR C:127 , HOH C:197 , HOH C:203 , HOH C:254 , HOH C:438 , ILE D:67 , TYR D:74 , THR D:75 , ASN D:76 , MET D:79
BINDING SITE FOR RESIDUE PEB C 206
08
AC8
SOFTWARE
LYS C:43 , ASN C:47 , ALA C:50 , VAL C:51 , GLU C:54 , ARG C:137 , LEU C:138 , CYS C:139 , ARG C:142 , ASP C:143 , HOH C:182 , HOH C:216 , HOH C:231 , THR D:147 , GLU D:148
BINDING SITE FOR RESIDUE PEB C 207
09
AC9
SOFTWARE
MET D:59 , MEN D:72 , CYS D:73 , ARG D:77 , ARG D:78 , ALA D:81 , CYS D:82 , ARG D:84 , ASP D:85 , ILE D:88 , ARG D:108 , LEU D:120 , VAL D:122 , PRO D:123 , SER D:126 , SER D:127 , HOH D:205 , HOH D:292 , HOH D:350 , HOH D:402
BINDING SITE FOR RESIDUE PEB D 208
10
BC1
SOFTWARE
ARG A:33 , GLN A:147 , GLU C:25 , GLN C:28 , ASN D:35 , LYS D:36 , LEU D:38 , ASP D:39 , ILE D:142 , THR D:143 , PHE D:153 , ALA D:154 , ALA D:155 , GLY D:156 , CYS D:158 , HOH D:211 , HOH D:232 , HOH D:313 , HOH D:365 , HOH D:370 , HOH D:400 , HOH D:473 , HOH D:531
BINDING SITE FOR RESIDUE PEB D 209
11
BC2
SOFTWARE
ASN D:47 , CYS D:50 , ASP D:54 , GLY D:58 , CYS D:61 , GLU D:62 , ARG D:129 , ALA D:136 , GLN D:137 , PHE D:141 , ALA D:146 , THR D:147 , GLU D:148 , ARG D:149 , HOH D:179 , HOH D:202 , HOH D:219 , HOH D:260 , HOH D:498
BINDING SITE FOR RESIDUE PEB D 210
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3v58a_ (A:)
1b: SCOP_d3v58b_ (B:)
1c: SCOP_d3v58c_ (C:)
1d: SCOP_d3v58d_ (D:)
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Class
:
All alpha proteins
(14657)
Fold
:
Globin-like
(1351)
Superfamily
:
Globin-like
(1308)
Family
:
Phycocyanin-like phycobilisome proteins
(65)
Protein domain
:
automated matches
(19)
Red alga (Porphyridium purpureum) [TaxId: 35688]
(2)
1a
d3v58a_
A:
1b
d3v58b_
B:
1c
d3v58c_
C:
1d
d3v58d_
D:
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CATH Domains
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Pfam Domains
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (130 KB)
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