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(-) Description

Title :  CRYSTAL STRUCTURE OF 7-CYANO-7-DEAZAGUANINE REDUCTASE, QUEF FROM VIBRIO CHOLERAE COMPLEXED WITH NADP AND PREQ
 
Authors :  Y. Kim, M. Zhou, M. Gu, W. F. Anderson, A. Joachimiak, Center For Struc Genomics Of Infectious Diseases (Csgid)
Date :  05 Dec 11  (Deposition) - 28 Dec 11  (Release) - 28 Dec 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.56
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Alpha-Beta Structure, Tunneling Fold, Reductase, Cytosol, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Kim, M. Zhou, M. Gu, W. F. Anderson, A. Joachimiak, Csgid
Crystal Structure Of 7-Cyano-7-Deazaguanine Reductase, Quef From Vibrio Cholerae Complexed With Nadp And Preq
To Be Published 2012
PubMed: search

(-) Compounds

Molecule 1 - NADPH-DEPENDENT 7-CYANO-7-DEAZAGUANINE REDUCTASE
    Chains: A, B, C, D
    EC Number: 1.7.1.13
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21 MAGIC
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: QUEF, VCM66_0859
    Mutation: YES
    Organism Scientific: VIBRIO CHOLERAE O1 BIOVAR EL TOR
    Organism Taxid: 243277
    Strain: N16961
    Synonym: 7-CYANO-7-CARBAGUANINE REDUCTASE, NADPH-DEPENDENT NITRILE OXIDOREDUCTASE, PREQ(0) REDUCTASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 27)

Asymmetric Unit (5, 27)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2GOL5Ligand/IonGLYCEROL
3GUN2Ligand/IonGUANINE
4MSE16Mod. Amino AcidSELENOMETHIONINE
5NAP2Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Biological Unit 1 (5, 13)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2GOL2Ligand/IonGLYCEROL
3GUN1Ligand/IonGUANINE
4MSE8Mod. Amino AcidSELENOMETHIONINE
5NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Biological Unit 2 (5, 14)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2GOL3Ligand/IonGLYCEROL
3GUN1Ligand/IonGUANINE
4MSE8Mod. Amino AcidSELENOMETHIONINE
5NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:188 , SER A:204 , MSE A:284 , ALA A:285 , ARG A:286 , HOH A:311 , HOH A:371 , LEU B:139BINDING SITE FOR RESIDUE EDO A 302
02AC2SOFTWAREGLN A:251 , SER A:252 , SER A:273 , HIS A:274 , SER C:112 , ASP C:114 , HOH C:337BINDING SITE FOR RESIDUE GOL A 303
03AC3SOFTWARESER A:95 , LYS A:96 , LYS A:99 , GLN A:199 , ARG A:262 , GLY A:263 , SER B:95 , LYS B:96 , LYS B:99 , ARG B:262 , GLY B:263 , GUN B:300 , HOH B:325 , HOH B:686 , HOH B:719BINDING SITE FOR RESIDUE NAP B 301
04AC4SOFTWARETRP B:62 , LEU B:92 , ILE B:93 , GLU B:94 , SER B:95 , PHE B:232 , HIS B:233 , GLU B:234 , ILE B:267 , NAP B:301BINDING SITE FOR RESIDUE GUN B 300
05AC5SOFTWAREALA B:126 , CYS B:127 , HOH B:326 , HOH B:414BINDING SITE FOR RESIDUE GOL B 302
06AC6SOFTWARETRP C:62 , LEU C:92 , ILE C:93 , GLU C:94 , SER C:95 , PHE C:232 , HIS C:233 , GLU C:234 , ILE C:267 , NAP D:301BINDING SITE FOR RESIDUE GUN C 300
07AC7SOFTWARESER C:95 , LYS C:96 , LYS C:99 , ARG C:262 , GLY C:263 , LEU C:265 , GUN C:300 , SER D:95 , LYS D:96 , LYS D:99 , ARG D:262 , GLY D:263 , HOH D:332 , HOH D:717 , HOH D:718 , HOH D:824BINDING SITE FOR RESIDUE NAP D 301
08AC8SOFTWARELEU C:139 , HIS D:188 , SER D:204 , MSE D:284 , ALA D:285 , ARG D:286 , HOH D:293 , HOH D:466BINDING SITE FOR RESIDUE EDO D 302
09AC9SOFTWARESER B:112 , TRP B:113 , ASP B:114 , GLN D:251 , SER D:252 , SER D:273 , HIS D:274BINDING SITE FOR RESIDUE GOL D 303
10BC1SOFTWAREASN A:91 , HOH A:289 , HOH A:369 , PRO D:38 , ASN D:91 , HOH D:312 , HOH D:393 , HOH D:471 , HOH D:607BINDING SITE FOR RESIDUE GOL D 304
11BC2SOFTWAREGLU D:82 , GLU D:145 , ASN D:281 , GLN D:282 , HOH D:374 , HOH D:395 , HOH D:443 , HOH D:582BINDING SITE FOR RESIDUE GOL D 305

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3UXV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3UXV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3UXV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3UXV)

(-) Exons   (0, 0)

(no "Exon" information available for 3UXV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:254
 aligned with C3LTF1_VIBCM | C3LTF1 from UniProtKB/TrEMBL  Length:287

    Alignment length:259
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278         
         C3LTF1_VIBCM    29 NQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVAIGEVSIPATSANLIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTMQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSHLLKSNCLITNQPDWGSVEIAYHGAKMNREALLRYLVSFREHNEFHEQCVERIFTDIMRYCQPQSLTVYARYTRRGGLDINPFRSSHQSAPNHNQRMARQ 287
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh.eeehhhhhhhhh.......eeeeeeeeeeeeee.....eeeeeeeeeee....eeehhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh...eeeeehhhhhh.........ee.............hhhhhh..eeeeeeeeeeeeeeeee.-----..eeeeeeeeeeeeeehhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh..eeeeeeee.....eeeeeeee............... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3uxv A  29 NQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVAIGEVSIPATSANLIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTmQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSHLLKSN-----QPDWGSVEIAYHGAKmNREALLRYLVSFREHNEFHEQCVERIFTDImRYCQPQSLTVYARYTRRGGLDINPFRSSHQSAPNHNQRmARQ 287
                                    38        48        58        68        78        88        98       108       118       128       138       148 |     158       168       178       188    |    -|      208     | 218       228       238      |248       258       268       278     |   
                                                                                                                                                   150-MSE                                    193   199            214-MSE                        245-MSE                                284-MSE


Chain A from PDB  Type:PROTEIN  Length:254
 aligned with QUEF_VIBCH | Q9KTK0 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:259
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272         
           QUEF_VIBCH    23 NQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVAIGEVSIPATSANLIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTMQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSHLLKSNCLITNQPDWGSVEIAYHGAKMNREALLRYLVSFREHNEFHEQCVERIFTDIMRYCQPQSLTVYARYTRRGGLDINPFRSSHQSAPNHNQRMARQ 281
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh.eeehhhhhhhhh.......eeeeeeeeeeeeee.....eeeeeeeeeee....eeehhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh...eeeeehhhhhh.........ee.............hhhhhh..eeeeeeeeeeeeeeeee.-----..eeeeeeeeeeeeeehhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh..eeeeeeee.....eeeeeeee............... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3uxv A  29 NQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVAIGEVSIPATSANLIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTmQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSHLLKSN-----QPDWGSVEIAYHGAKmNREALLRYLVSFREHNEFHEQCVERIFTDImRYCQPQSLTVYARYTRRGGLDINPFRSSHQSAPNHNQRmARQ 287
                                    38        48        58        68        78        88        98       108       118       128       138       148 |     158       168       178       188    |    -|      208     | 218       228       238      |248       258       268       278     |   
                                                                                                                                                   150-MSE                                    193   199            214-MSE                        245-MSE                                284-MSE


Chain B from PDB  Type:PROTEIN  Length:259
 aligned with C3LTF1_VIBCM | C3LTF1 from UniProtKB/TrEMBL  Length:287

    Alignment length:259
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278         
         C3LTF1_VIBCM    29 NQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVAIGEVSIPATSANLIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTMQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSHLLKSNCLITNQPDWGSVEIAYHGAKMNREALLRYLVSFREHNEFHEQCVERIFTDIMRYCQPQSLTVYARYTRRGGLDINPFRSSHQSAPNHNQRMARQ 287
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh.eeehhhhhhhh........eeeeeeeeeeeeee.....eeeeeeeeeee....eeehhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh...eeeeehhhhhh.........ee.............hhhhhh..eeeeeeeeeeeeeeeeee......eeeeeeeeeeeeeeehhhhhhhhhhh......hhhhhhhhhhhhhhhhhh..eeeeeeee.....eeeeeeee............... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3uxv B  29 NQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVAIGEVSIPATSANLIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTmQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSHLLKSNALITNQPDWGSVEIAYHGAKmNREALLRYLVSFREHNEFHEQCVERIFTDImRYCQPQSLTVYARYTRRGGLDINPFRSSHQSAPNHNQRmARQ 287
                                    38        48        58        68        78        88        98       108       118       128       138       148 |     158       168       178       188       198       208     | 218       228       238      |248       258       268       278     |   
                                                                                                                                                   150-MSE                                                         214-MSE                        245-MSE                                284-MSE


Chain B from PDB  Type:PROTEIN  Length:259
 aligned with QUEF_VIBCH | Q9KTK0 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:259
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272         
           QUEF_VIBCH    23 NQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVAIGEVSIPATSANLIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTMQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSHLLKSNCLITNQPDWGSVEIAYHGAKMNREALLRYLVSFREHNEFHEQCVERIFTDIMRYCQPQSLTVYARYTRRGGLDINPFRSSHQSAPNHNQRMARQ 281
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh.eeehhhhhhhh........eeeeeeeeeeeeee.....eeeeeeeeeee....eeehhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh...eeeeehhhhhh.........ee.............hhhhhh..eeeeeeeeeeeeeeeeee......eeeeeeeeeeeeeeehhhhhhhhhhh......hhhhhhhhhhhhhhhhhh..eeeeeeee.....eeeeeeee............... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3uxv B  29 NQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVAIGEVSIPATSANLIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTmQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSHLLKSNALITNQPDWGSVEIAYHGAKmNREALLRYLVSFREHNEFHEQCVERIFTDImRYCQPQSLTVYARYTRRGGLDINPFRSSHQSAPNHNQRmARQ 287
                                    38        48        58        68        78        88        98       108       118       128       138       148 |     158       168       178       188       198       208     | 218       228       238      |248       258       268       278     |   
                                                                                                                                                   150-MSE                                                         214-MSE                        245-MSE                                284-MSE


Chain C from PDB  Type:PROTEIN  Length:259
 aligned with C3LTF1_VIBCM | C3LTF1 from UniProtKB/TrEMBL  Length:287

    Alignment length:259
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278         
         C3LTF1_VIBCM    29 NQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVAIGEVSIPATSANLIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTMQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSHLLKSNCLITNQPDWGSVEIAYHGAKMNREALLRYLVSFREHNEFHEQCVERIFTDIMRYCQPQSLTVYARYTRRGGLDINPFRSSHQSAPNHNQRMARQ 287
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh.eeehhhhhhhh........eeeeeeeeeeeeee.....eeeeeeeeeee....eeehhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh...eeeeehhhhhh.........ee.............hhhhhh..eeeeeeeeeeeeeeeeee......eeeeeeeeeeeeeeehhhhhhhhhhh......hhhhhhhhhhhhhhhhhh..eeeeeeee.....eeeeeeee............... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3uxv C  29 NQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVAIGEVSIPATSANLIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTmQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSHLLKSNALITNQPDWGSVEIAYHGAKmNREALLRYLVSFREHNEFHEQCVERIFTDImRYCQPQSLTVYARYTRRGGLDINPFRSSHQSAPNHNQRmARQ 287
                                    38        48        58        68        78        88        98       108       118       128       138       148 |     158       168       178       188       198       208     | 218       228       238      |248       258       268       278     |   
                                                                                                                                                   150-MSE                                                         214-MSE                        245-MSE                                284-MSE


Chain C from PDB  Type:PROTEIN  Length:259
 aligned with QUEF_VIBCH | Q9KTK0 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:259
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272         
           QUEF_VIBCH    23 NQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVAIGEVSIPATSANLIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTMQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSHLLKSNCLITNQPDWGSVEIAYHGAKMNREALLRYLVSFREHNEFHEQCVERIFTDIMRYCQPQSLTVYARYTRRGGLDINPFRSSHQSAPNHNQRMARQ 281
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh.eeehhhhhhhh........eeeeeeeeeeeeee.....eeeeeeeeeee....eeehhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh...eeeeehhhhhh.........ee.............hhhhhh..eeeeeeeeeeeeeeeeee......eeeeeeeeeeeeeeehhhhhhhhhhh......hhhhhhhhhhhhhhhhhh..eeeeeeee.....eeeeeeee............... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3uxv C  29 NQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVAIGEVSIPATSANLIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTmQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSHLLKSNALITNQPDWGSVEIAYHGAKmNREALLRYLVSFREHNEFHEQCVERIFTDImRYCQPQSLTVYARYTRRGGLDINPFRSSHQSAPNHNQRmARQ 287
                                    38        48        58        68        78        88        98       108       118       128       138       148 |     158       168       178       188       198       208     | 218       228       238      |248       258       268       278     |   
                                                                                                                                                   150-MSE                                                         214-MSE                        245-MSE                                284-MSE


Chain D from PDB  Type:PROTEIN  Length:254
 aligned with C3LTF1_VIBCM | C3LTF1 from UniProtKB/TrEMBL  Length:287

    Alignment length:259
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278         
         C3LTF1_VIBCM    29 NQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVAIGEVSIPATSANLIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTMQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSHLLKSNCLITNQPDWGSVEIAYHGAKMNREALLRYLVSFREHNEFHEQCVERIFTDIMRYCQPQSLTVYARYTRRGGLDINPFRSSHQSAPNHNQRMARQ 287
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh.eeehhhhhhhhh.......eeeeeeeeeeeeee.....eeeeeeeeeee....eeehhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh...eeeeee.hhhh.........ee.............hhhhhh..eeeeeeeeeeeeeeeee.-----..eeeeeeeeeeeeeehhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh..eeeeeeee.....eeeeeeee............... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3uxv D  29 NQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVAIGEVSIPATSANLIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTmQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSHLLKSN-----QPDWGSVEIAYHGAKmNREALLRYLVSFREHNEFHEQCVERIFTDImRYCQPQSLTVYARYTRRGGLDINPFRSSHQSAPNHNQRmARQ 287
                                    38        48        58        68        78        88        98       108       118       128       138       148 |     158       168       178       188    |    -|      208     | 218       228       238      |248       258       268       278     |   
                                                                                                                                                   150-MSE                                    193   199            214-MSE                        245-MSE                                284-MSE


Chain D from PDB  Type:PROTEIN  Length:254
 aligned with QUEF_VIBCH | Q9KTK0 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:259
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272         
           QUEF_VIBCH    23 NQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVAIGEVSIPATSANLIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTMQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSHLLKSNCLITNQPDWGSVEIAYHGAKMNREALLRYLVSFREHNEFHEQCVERIFTDIMRYCQPQSLTVYARYTRRGGLDINPFRSSHQSAPNHNQRMARQ 281
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh.eeehhhhhhhhh.......eeeeeeeeeeeeee.....eeeeeeeeeee....eeehhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh...eeeeee.hhhh.........ee.............hhhhhh..eeeeeeeeeeeeeeeee.-----..eeeeeeeeeeeeeehhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh..eeeeeeee.....eeeeeeee............... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3uxv D  29 NQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVAIGEVSIPATSANLIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTmQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSHLLKSN-----QPDWGSVEIAYHGAKmNREALLRYLVSFREHNEFHEQCVERIFTDImRYCQPQSLTVYARYTRRGGLDINPFRSSHQSAPNHNQRmARQ 287
                                    38        48        58        68        78        88        98       108       118       128       138       148 |     158       168       178       188    |    -|      208     | 218       228       238      |248       258       268       278     |   
                                                                                                                                                   150-MSE                                    193   199            214-MSE                        245-MSE                                284-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3UXV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3UXV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3UXV)

(-) Gene Ontology  (9, 15)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (C3LTF1_VIBCM | C3LTF1)
molecular function
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0046857    oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which a nitrogenous group, excluding NH and NH2 groups, acts as a hydrogen or electron donor and reduces NAD or NADP.
    GO:0033739    preQ1 synthase activity    Catalysis of the reaction: 7-aminomethyl-7-deazaguanine + 2 NADP(+) = 7-cyano-7-deazaguanine + 3 H(+) + 2 NADPH.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0008616    queuosine biosynthetic process    The chemical reactions and pathways resulting in the formation of queuosines, any of a series of nucleosides found in tRNA and having an additional pentenyl ring added via an NH group to the methyl group of 7-methylguanosine. The pentenyl ring may carry other substituents.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Chain A,B,C,D   (QUEF_VIBCH | Q9KTK0)
molecular function
    GO:0003674    molecular_function    Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0046857    oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which a nitrogenous group, excluding NH and NH2 groups, acts as a hydrogen or electron donor and reduces NAD or NADP.
    GO:0033739    preQ1 synthase activity    Catalysis of the reaction: 7-aminomethyl-7-deazaguanine + 2 NADP(+) = 7-cyano-7-deazaguanine + 3 H(+) + 2 NADPH.
biological process
    GO:0008150    biological_process    Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0008616    queuosine biosynthetic process    The chemical reactions and pathways resulting in the formation of queuosines, any of a series of nucleosides found in tRNA and having an additional pentenyl ring added via an NH group to the methyl group of 7-methylguanosine. The pentenyl ring may carry other substituents.
cellular component
    GO:0005575    cellular_component    The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  1.7.1.13
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        C3LTF1_VIBCM | C3LTF1: 3uxj 4iqi
        QUEF_VIBCH | Q9KTK0: 3bp1 3rj4 3rzp 3s19 3uxj 4ghm 4iqi

(-) Related Entries Specified in the PDB File

3bp1 WILD-TYPE PROTEIN, COMPLEXED WITH GUANINE
3rj4 THE WILD-TYPE PROTEIN
3rjb WILD-TYPE PROTEIN, COMPLEXED WITH CYTOSINE
3rzp THE C194A MUTANT COMPLEXED WITH PREQ1
3rzq THE H233A MUTANT COMPLEXED WITH PREQ0
3s19 R262L MUTANT AND COMPLEXED WITH PREQ0
3uxj R262L MUTANT AND COMPLEXED WITH PREQ0 AND NADP RELATED ID: IDP01750 RELATED DB: TARGETDB