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(-) Description

Title :  CRYSTAL STRUCTURE OF 7-CYANO-7-DEAZAGUANINE REDUCTASE, QUEF FROM VIBRIO CHOLERAE COMPLEXED WITH NADP AND PREQ0
 
Authors :  Y. Kim, R. Zhang, M. Gu, W. F. Anderson, A. Joachimiak, Center For Stru Genomics Of Infectious Diseases (Csgid)
Date :  05 Dec 11  (Deposition) - 04 Jan 12  (Release) - 04 Jan 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Alpha-Beta Structure, Tunneling Fold, Reductase, Cytosol, Oxidoreductase-Oxidoreductase Substrate Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Kim, R. Zhang, M. Gu, W. F. Anderson, A. Joachimiak, Csgid
Crystal Structure Of 7-Cyano-7-Deazaguanine Reductase, Quef From Vibrio Cholerae Complexed With Nadp And Preq0
To Be Published 2012
PubMed: search

(-) Compounds

Molecule 1 - NADPH-DEPENDENT 7-CYANO-7-DEAZAGUANINE REDUCTASE
    Chains: A, B, C, D
    EC Number: 1.7.1.13
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21 MAGIC
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: QUEF, VCM66_0859
    Mutation: YES
    Organism Scientific: VIBRIO CHOLERAE O1 BIOVAR EL TOR
    Organism Taxid: 243277
    Strain: N16961
    Synonym: 7-CYANO-7-CARBAGUANINE REDUCTASE, NADPH-DEPENDENT NITRILE OXIDOREDUCTASE, PREQ(0) REDUCTASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 31)

Asymmetric Unit (4, 31)
No.NameCountTypeFull Name
1EDO9Ligand/Ion1,2-ETHANEDIOL
2MSE16Mod. Amino AcidSELENOMETHIONINE
3NAP2Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
4PRF4Ligand/Ion7-DEAZA-7-AMINOMETHYL-GUANINE
Biological Unit 1 (4, 18)
No.NameCountTypeFull Name
1EDO7Ligand/Ion1,2-ETHANEDIOL
2MSE8Mod. Amino AcidSELENOMETHIONINE
3NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
4PRF2Ligand/Ion7-DEAZA-7-AMINOMETHYL-GUANINE
Biological Unit 2 (4, 13)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2MSE8Mod. Amino AcidSELENOMETHIONINE
3NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
4PRF2Ligand/Ion7-DEAZA-7-AMINOMETHYL-GUANINE

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELEU A:92 , ILE A:93 , GLU A:94 , SER A:95 , CYS A:194 , ASP A:201 , PHE A:232 , HIS A:233 , GLU A:234 , ILE A:267 , NAP A:291BINDING SITE FOR RESIDUE PRF A 1194
02AC2SOFTWARESER A:95 , LYS A:96 , LYS A:99 , THR A:197 , GLN A:199 , LEU A:262 , GLY A:263 , HOH A:813 , HOH A:996 , PRF A:1194 , LYS B:96 , LYS B:99 , LEU B:262 , GLY B:263 , HOH B:321 , HOH B:1109BINDING SITE FOR RESIDUE NAP A 291
03AC3SOFTWAREALA A:208 , TYR A:209 , HIS A:210 , SER A:252 , HOH A:486 , HOH A:1070 , ALA C:111BINDING SITE FOR RESIDUE EDO A 292
04AC4SOFTWARECYS A:154 , GLN A:158 , ARG A:216 , HOH A:1083BINDING SITE FOR RESIDUE EDO A 293
05AC5SOFTWARETRP B:62 , LEU B:92 , ILE B:93 , GLU B:94 , SER B:95 , CYS B:194 , ASP B:201 , PHE B:232 , HIS B:233 , GLU B:234 , ILE B:267BINDING SITE FOR RESIDUE PRF B 1194
06AC6SOFTWAREILE B:162 , ALA B:163 , ARG B:221 , HOH B:317 , HOH B:542BINDING SITE FOR RESIDUE EDO B 291
07AC7SOFTWAREASN A:140 , THR B:149 , HIS B:186 , HIS B:188 , HOH B:469 , HOH B:991BINDING SITE FOR RESIDUE EDO B 292
08AC8SOFTWAREGLN B:151 , GLU B:206 , HIS B:280 , GLU C:145 , PRO C:146BINDING SITE FOR RESIDUE EDO B 293
09AC9SOFTWAREASN A:164 , GLY B:178 , GLU B:179 , LYS B:213 , HOH B:746BINDING SITE FOR RESIDUE EDO B 294
10BC1SOFTWARETYR B:142 , PRO B:146 , GLN B:282 , ARG B:283 , HOH B:352 , HOH B:388BINDING SITE FOR RESIDUE EDO B 295
11BC2SOFTWARETRP C:62 , LEU C:92 , ILE C:93 , GLU C:94 , SER C:95 , CYS C:194 , ILE C:196 , ASP C:201 , PHE C:232 , HIS C:233 , GLU C:234 , ILE C:267BINDING SITE FOR RESIDUE PRF C 1194
12BC3SOFTWAREILE C:162 , ALA C:163 , ARG C:221 , HOH C:300 , HOH C:637 , HOH C:1059BINDING SITE FOR RESIDUE EDO C 292
13BC4SOFTWAREGLU B:145 , PRO B:146 , GLN C:151 , GLU C:206 , HIS C:280BINDING SITE FOR RESIDUE EDO C 293
14BC5SOFTWARELYS C:96 , LYS C:99 , LEU C:262 , GLY C:263 , HOH C:330 , HOH C:1112 , SER D:95 , LYS D:96 , LYS D:99 , THR D:197 , GLN D:199 , LEU D:262 , GLY D:263 , HOH D:1021 , PRF D:1194BINDING SITE FOR RESIDUE NAP D 291
15BC6SOFTWARELEU D:92 , ILE D:93 , GLU D:94 , SER D:95 , CYS D:194 , ASP D:201 , PHE D:232 , HIS D:233 , GLU D:234 , ILE D:267 , NAP D:291BINDING SITE FOR RESIDUE PRF D 1194

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3UXJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3UXJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3UXJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3UXJ)

(-) Exons   (0, 0)

(no "Exon" information available for 3UXJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:261
 aligned with C3LTF1_VIBCM | C3LTF1 from UniProtKB/TrEMBL  Length:287

    Alignment length:261
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286 
         C3LTF1_VIBCM    27 YANQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVAIGEVSIPATSANLIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTMQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSHLLKSNCLITNQPDWGSVEIAYHGAKMNREALLRYLVSFREHNEFHEQCVERIFTDIMRYCQPQSLTVYARYTRRGGLDINPFRSSHQSAPNHNQRMARQ 287
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhh.eeehhhhhhhh........eeeeeeee...eee.....eee.eeeeeee....eeehhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh...eeeeehhhhhh.........ee.............hhhhhh..eeeeeeeeeeeeeeeeeee.....eeeeeeeeeeeeeeehhhhhhhhhhh....eehhhhhhhhhhhhhhhhhh..eeeeeeee.....eeeeeeee............... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3uxj A  27 YANQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVAIGEVSIPATSANLIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTmQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSHLLKSNCLITNQPDWGSVEIAYHGAKmNREALLRYLVSFREHNEFHEQCVERIFTDImRYCQPQSLTVYARYTRLGGLDINPFRSSHQSAPNHNQRmARQ 287
                                    36        46        56        66        76        86        96       106       116       126       136       146   |   156       166       176       186       196       206       216       226       236       246       256       266       276       286 
                                                                                                                                                     150-MSE                                                         214-MSE                        245-MSE                                284-MSE


Chain A from PDB  Type:PROTEIN  Length:261
 aligned with QUEF_VIBCH | Q9KTK0 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:261
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280 
           QUEF_VIBCH    21 YANQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVAIGEVSIPATSANLIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTMQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSHLLKSNCLITNQPDWGSVEIAYHGAKMNREALLRYLVSFREHNEFHEQCVERIFTDIMRYCQPQSLTVYARYTRRGGLDINPFRSSHQSAPNHNQRMARQ 281
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhh.eeehhhhhhhh........eeeeeeee...eee.....eee.eeeeeee....eeehhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh...eeeeehhhhhh.........ee.............hhhhhh..eeeeeeeeeeeeeeeeeee.....eeeeeeeeeeeeeeehhhhhhhhhhh....eehhhhhhhhhhhhhhhhhh..eeeeeeee.....eeeeeeee............... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3uxj A  27 YANQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVAIGEVSIPATSANLIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTmQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSHLLKSNCLITNQPDWGSVEIAYHGAKmNREALLRYLVSFREHNEFHEQCVERIFTDImRYCQPQSLTVYARYTRLGGLDINPFRSSHQSAPNHNQRmARQ 287
                                    36        46        56        66        76        86        96       106       116       126       136       146   |   156       166       176       186       196       206       216       226       236       246       256       266       276       286 
                                                                                                                                                     150-MSE                                                         214-MSE                        245-MSE                                284-MSE


Chain B from PDB  Type:PROTEIN  Length:259
 aligned with C3LTF1_VIBCM | C3LTF1 from UniProtKB/TrEMBL  Length:287

    Alignment length:259
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278         
         C3LTF1_VIBCM    29 NQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVAIGEVSIPATSANLIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTMQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSHLLKSNCLITNQPDWGSVEIAYHGAKMNREALLRYLVSFREHNEFHEQCVERIFTDIMRYCQPQSLTVYARYTRRGGLDINPFRSSHQSAPNHNQRMARQ 287
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh.eeehhhhhhhh........eeeeeeeeeeeeee.....eeeeeeeeeee....eeehhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh...eeeeee.hhhh.........ee.............hhhhhh..eeeeeeeeeeeeeeeeeee.....eeeeeeeeeeeeeeehhhhhhhhhhh....eehhhhhhhhhhhhhhhhhh..eeeeeeee.....eeeeeeee............... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3uxj B  29 NQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVAIGEVSIPATSANLIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTmQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSHLLKSNCLITNQPDWGSVEIAYHGAKmNREALLRYLVSFREHNEFHEQCVERIFTDImRYCQPQSLTVYARYTRLGGLDINPFRSSHQSAPNHNQRmARQ 287
                                    38        48        58        68        78        88        98       108       118       128       138       148 |     158       168       178       188       198       208     | 218       228       238      |248       258       268       278     |   
                                                                                                                                                   150-MSE                                                         214-MSE                        245-MSE                                284-MSE


Chain B from PDB  Type:PROTEIN  Length:259
 aligned with QUEF_VIBCH | Q9KTK0 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:259
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272         
           QUEF_VIBCH    23 NQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVAIGEVSIPATSANLIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTMQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSHLLKSNCLITNQPDWGSVEIAYHGAKMNREALLRYLVSFREHNEFHEQCVERIFTDIMRYCQPQSLTVYARYTRRGGLDINPFRSSHQSAPNHNQRMARQ 281
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh.eeehhhhhhhh........eeeeeeeeeeeeee.....eeeeeeeeeee....eeehhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh...eeeeee.hhhh.........ee.............hhhhhh..eeeeeeeeeeeeeeeeeee.....eeeeeeeeeeeeeeehhhhhhhhhhh....eehhhhhhhhhhhhhhhhhh..eeeeeeee.....eeeeeeee............... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3uxj B  29 NQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVAIGEVSIPATSANLIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTmQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSHLLKSNCLITNQPDWGSVEIAYHGAKmNREALLRYLVSFREHNEFHEQCVERIFTDImRYCQPQSLTVYARYTRLGGLDINPFRSSHQSAPNHNQRmARQ 287
                                    38        48        58        68        78        88        98       108       118       128       138       148 |     158       168       178       188       198       208     | 218       228       238      |248       258       268       278     |   
                                                                                                                                                   150-MSE                                                         214-MSE                        245-MSE                                284-MSE


Chain C from PDB  Type:PROTEIN  Length:259
 aligned with C3LTF1_VIBCM | C3LTF1 from UniProtKB/TrEMBL  Length:287

    Alignment length:259
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278         
         C3LTF1_VIBCM    29 NQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVAIGEVSIPATSANLIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTMQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSHLLKSNCLITNQPDWGSVEIAYHGAKMNREALLRYLVSFREHNEFHEQCVERIFTDIMRYCQPQSLTVYARYTRRGGLDINPFRSSHQSAPNHNQRMARQ 287
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh.eeehhhhhhhh........eeeeeeeeeeeeee.....eeeeeeeeeee....eeehhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh...eeeeee.hhhh.........ee.............hhhhhh..eeeeeeeeeeeeeeeeeee.....eeeeeeeeeeeeeeehhhhhhhhhhh....eehhhhhhhhhhhhhhhhhh..eeeeeeee.....eeeeeeee............... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3uxj C  29 NQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVAIGEVSIPATSANLIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTmQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSHLLKSNCLITNQPDWGSVEIAYHGAKmNREALLRYLVSFREHNEFHEQCVERIFTDImRYCQPQSLTVYARYTRLGGLDINPFRSSHQSAPNHNQRmARQ 287
                                    38        48        58        68        78        88        98       108       118       128       138       148 |     158       168       178       188       198       208     | 218       228       238      |248       258       268       278     |   
                                                                                                                                                   150-MSE                                                         214-MSE                        245-MSE                                284-MSE


Chain C from PDB  Type:PROTEIN  Length:259
 aligned with QUEF_VIBCH | Q9KTK0 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:259
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272         
           QUEF_VIBCH    23 NQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVAIGEVSIPATSANLIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTMQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSHLLKSNCLITNQPDWGSVEIAYHGAKMNREALLRYLVSFREHNEFHEQCVERIFTDIMRYCQPQSLTVYARYTRRGGLDINPFRSSHQSAPNHNQRMARQ 281
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh.eeehhhhhhhh........eeeeeeeeeeeeee.....eeeeeeeeeee....eeehhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh...eeeeee.hhhh.........ee.............hhhhhh..eeeeeeeeeeeeeeeeeee.....eeeeeeeeeeeeeeehhhhhhhhhhh....eehhhhhhhhhhhhhhhhhh..eeeeeeee.....eeeeeeee............... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3uxj C  29 NQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVAIGEVSIPATSANLIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTmQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSHLLKSNCLITNQPDWGSVEIAYHGAKmNREALLRYLVSFREHNEFHEQCVERIFTDImRYCQPQSLTVYARYTRLGGLDINPFRSSHQSAPNHNQRmARQ 287
                                    38        48        58        68        78        88        98       108       118       128       138       148 |     158       168       178       188       198       208     | 218       228       238      |248       258       268       278     |   
                                                                                                                                                   150-MSE                                                         214-MSE                        245-MSE                                284-MSE


Chain D from PDB  Type:PROTEIN  Length:261
 aligned with C3LTF1_VIBCM | C3LTF1 from UniProtKB/TrEMBL  Length:287

    Alignment length:261
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286 
         C3LTF1_VIBCM    27 YANQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVAIGEVSIPATSANLIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTMQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSHLLKSNCLITNQPDWGSVEIAYHGAKMNREALLRYLVSFREHNEFHEQCVERIFTDIMRYCQPQSLTVYARYTRRGGLDINPFRSSHQSAPNHNQRMARQ 287
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhh.eeehhhhhh..........eeeeeeeeeeeeee.....eeeeeeeeeee....eeehhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh...eeeeehhhhhh.........ee.............hhhhhh..eeeeeeeeeeeeeeeeeee.....eeeeeeeeeeeeeeehhhhhhhhhhh....eehhhhhhhhhhhhhhhhhh..eeeeeeee.....eeeeeeee............... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3uxj D  27 YANQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVAIGEVSIPATSANLIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTmQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSHLLKSNCLITNQPDWGSVEIAYHGAKmNREALLRYLVSFREHNEFHEQCVERIFTDImRYCQPQSLTVYARYTRLGGLDINPFRSSHQSAPNHNQRmARQ 287
                                    36        46        56        66        76        86        96       106       116       126       136       146   |   156       166       176       186       196       206       216       226       236       246       256       266       276       286 
                                                                                                                                                     150-MSE                                                         214-MSE                        245-MSE                                284-MSE


Chain D from PDB  Type:PROTEIN  Length:261
 aligned with QUEF_VIBCH | Q9KTK0 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:261
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280 
           QUEF_VIBCH    21 YANQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVAIGEVSIPATSANLIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTMQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSHLLKSNCLITNQPDWGSVEIAYHGAKMNREALLRYLVSFREHNEFHEQCVERIFTDIMRYCQPQSLTVYARYTRRGGLDINPFRSSHQSAPNHNQRMARQ 281
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhh.eeehhhhhh..........eeeeeeeeeeeeee.....eeeeeeeeeee....eeehhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh...eeeeehhhhhh.........ee.............hhhhhh..eeeeeeeeeeeeeeeeeee.....eeeeeeeeeeeeeeehhhhhhhhhhh....eehhhhhhhhhhhhhhhhhh..eeeeeeee.....eeeeeeee............... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3uxj D  27 YANQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVAIGEVSIPATSANLIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTmQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSHLLKSNCLITNQPDWGSVEIAYHGAKmNREALLRYLVSFREHNEFHEQCVERIFTDImRYCQPQSLTVYARYTRLGGLDINPFRSSHQSAPNHNQRmARQ 287
                                    36        46        56        66        76        86        96       106       116       126       136       146   |   156       166       176       186       196       206       216       226       236       246       256       266       276       286 
                                                                                                                                                     150-MSE                                                         214-MSE                        245-MSE                                284-MSE
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3UXJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3UXJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3UXJ)

(-) Gene Ontology  (9, 15)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (C3LTF1_VIBCM | C3LTF1)
molecular function
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0046857    oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which a nitrogenous group, excluding NH and NH2 groups, acts as a hydrogen or electron donor and reduces NAD or NADP.
    GO:0033739    preQ1 synthase activity    Catalysis of the reaction: 7-aminomethyl-7-deazaguanine + 2 NADP(+) = 7-cyano-7-deazaguanine + 3 H(+) + 2 NADPH.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0008616    queuosine biosynthetic process    The chemical reactions and pathways resulting in the formation of queuosines, any of a series of nucleosides found in tRNA and having an additional pentenyl ring added via an NH group to the methyl group of 7-methylguanosine. The pentenyl ring may carry other substituents.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Chain A,B,C,D   (QUEF_VIBCH | Q9KTK0)
molecular function
    GO:0003674    molecular_function    Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0046857    oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which a nitrogenous group, excluding NH and NH2 groups, acts as a hydrogen or electron donor and reduces NAD or NADP.
    GO:0033739    preQ1 synthase activity    Catalysis of the reaction: 7-aminomethyl-7-deazaguanine + 2 NADP(+) = 7-cyano-7-deazaguanine + 3 H(+) + 2 NADPH.
biological process
    GO:0008150    biological_process    Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0008616    queuosine biosynthetic process    The chemical reactions and pathways resulting in the formation of queuosines, any of a series of nucleosides found in tRNA and having an additional pentenyl ring added via an NH group to the methyl group of 7-methylguanosine. The pentenyl ring may carry other substituents.
cellular component
    GO:0005575    cellular_component    The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  1.7.1.13
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        C3LTF1_VIBCM | C3LTF1: 3uxv 4iqi
        QUEF_VIBCH | Q9KTK0: 3bp1 3rj4 3rzp 3s19 3uxv 4ghm 4iqi

(-) Related Entries Specified in the PDB File

3bp1 WILD-TYPE PROTEIN, COMPLEXED WITH GUANINE
3rj4 THE WILD-TYPE PROTEIN
3rjb WILD-TYPE PROTEIN, COMPLEXED WITH CYTOSINE
3rzp THE C194A MUTANT COMPLEXED WITH PREQ1
3rzq THE H233A MUTANT COMPLEXED WITH PREQ0
3s19 R262L MUTANT AND COMPLEXED WITH PREQ0 RELATED ID: IDP01750 RELATED DB: TARGETDB
3uxv