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(-) Description

Title :  1.5 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF TRANSALDOLASE FROM FRANCISELLA TULARENSIS IN COVALENT COMPLEX WITH ARABINOSE-5-PHOSPHATE
 
Authors :  S. H. Light, G. Minasov, L. Shuvalova, L. Papazisi, W. F. Anderson, Cent Structural Genomics Of Infectious Diseases (Csgid)
Date :  17 Nov 11  (Deposition) - 30 Nov 11  (Release) - 09 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Alpha-Beta Barrel/Tim Barrel, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. H. Light, W. F. Anderson
Arabinose 5-Phosphate Covalently Inhibits Transaldolase.
J. Struct. Funct. Genom. V. 15 41 2014
PubMed-ID: 24510200  |  Reference-DOI: 10.1007/S10969-014-9174-1

(-) Compounds

Molecule 1 - TRANSALDOLASE
    Chains: A, B
    EC Number: 2.2.1.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21 MAGIC
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: FTT_1093C, TALA
    Organism Scientific: FRANCISELLA TULARENSIS SUBSP. TULARENSIS
    Organism Taxid: 119856
    Strain: SCHU S4

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 7)

Asymmetric/Biological Unit (4, 7)
No.NameCountTypeFull Name
1A5P2Ligand/IonARABINOSE-5-PHOSPHATE
2P6G1Ligand/IonHEXAETHYLENE GLYCOL
3PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
4PGE2Ligand/IonTRIETHYLENE GLYCOL

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:11 , MET A:190 , ASN A:194 , LEU A:195 , LYS A:196 , PHE A:198 , VAL A:265 , HOH A:351 , HOH A:674BINDING SITE FOR RESIDUE P6G A 954
2AC2SOFTWAREASP A:18 , THR A:35 , ASN A:36 , LYS A:135 , THR A:159 , PHE A:181 , ARG A:184 , ALA A:229 , SER A:230 , ARG A:232 , HOH A:341 , HOH A:348 , HOH A:373 , HOH A:387 , HOH A:564BINDING SITE FOR RESIDUE A5P A 1601
3AC3SOFTWARELYS A:74 , ARG A:103BINDING SITE FOR RESIDUE PGE A 322
4AC4SOFTWARELYS A:10 , GLN A:11 , THR A:13 , LYS A:196BINDING SITE FOR RESIDUE PEG A 323
5AC5SOFTWAREGLU B:291 , HOH B:650 , HOH B:680BINDING SITE FOR RESIDUE PGE B 322
6AC6SOFTWAREASP B:18 , THR B:35 , ASN B:36 , LYS B:135 , THR B:159 , PHE B:181 , ARG B:184 , ALA B:229 , SER B:230 , ARG B:232 , PHE B:306 , HOH B:413 , HOH B:418 , HOH B:425 , HOH B:477 , HOH B:600 , HOH B:616 , HOH B:692BINDING SITE FOR RESIDUE A5P B 1601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3UPB)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3UPB)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3UPB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3UPB)

(-) Exons   (0, 0)

(no "Exon" information available for 3UPB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:311
 aligned with Q5NFX0_FRATT | Q5NFX0 from UniProtKB/TrEMBL  Length:321

    Alignment length:321
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320 
         Q5NFX0_FRATT     1 MQKSVLEQLKQVTMVVADTGDFELIKKYKPVDATTNPSLILKAVKEQKYSNLVAETISKVKANNPDLNSDDLVKEIAIEILVSFGIKILDVIEGKVSSEVDARVSFNSATTIDYAKRIIARYESNGIPKDRVLIKIAATWEGIKAAKLLQKEGINCNLTLIFDKAQAKACAEAGVYLVSPFVGRITDWQMQQNNLKTFPAIADDDGVNSVKAIYKLYKSHGFKTIVMGASFRNVEQVIALAGCDALTISPVLLEELKNRDEHLEVKLTKNDDVVTQSPQISEADFRWLMNENAMATHKLAEGIRLFTKDTIELENIIKQNL 321
               SCOP domains d3upba_ A: automated matches                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhheeeee..hhhhhh.....eee.hhhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.....eeee.hhhhh.hhhhhhhhhhhhhhhhhhh..hhh.eeeeee.hhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhh...eeee.hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh...eeee....hhhhhhh.....eeeehhhhhhhhhh..........----------..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3upb A   1 MQKSVLEQLKQVTMVVADTGDFELIKKYKPVDATTNPSLILKAVKEQKYSNLVAETISKVKANNPDLNSDDLVKEIAIEILVSFGIKILDVIEGKVSSEVDARVSFNSATTIDYAKRIIARYESNGIPKDRVLIKIAATWEGIKAAKLLQKEGINCNLTLIFDKAQAKACAEAGVYLVSPFVGRITDWQMQQNNLKTFPAIADDDGVNSVKAIYKLYKSHGFKTIVMGASFRNVEQVIALAGCDALTISPVLLEELKNRDEHLEVKLT----------QISEADFRWLMNENAMATHKLAEGIRLFTKDTIELENIIKQNL 321
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       | -       280       290       300       310       320 
                                                                                                                                                                                                                                                                                                     268        279                                          


Chain B from PDB  Type:PROTEIN  Length:309
 aligned with Q5NFX0_FRATT | Q5NFX0 from UniProtKB/TrEMBL  Length:321

    Alignment length:319
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312         
         Q5NFX0_FRATT     3 KSVLEQLKQVTMVVADTGDFELIKKYKPVDATTNPSLILKAVKEQKYSNLVAETISKVKANNPDLNSDDLVKEIAIEILVSFGIKILDVIEGKVSSEVDARVSFNSATTIDYAKRIIARYESNGIPKDRVLIKIAATWEGIKAAKLLQKEGINCNLTLIFDKAQAKACAEAGVYLVSPFVGRITDWQMQQNNLKTFPAIADDDGVNSVKAIYKLYKSHGFKTIVMGASFRNVEQVIALAGCDALTISPVLLEELKNRDEHLEVKLTKNDDVVTQSPQISEADFRWLMNENAMATHKLAEGIRLFTKDTIELENIIKQNL 321
               SCOP domains d3upbb_ B: automated matches                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh..eeeee..hhhhhh.....eee.hhhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.....eeee.hhhhh.hhhhhhhhhhhhhhhhhhh..hhh.eeeeee.hhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhh...eeee.hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh...eeee....hhhhhhh.....eeeehhhhhhhhhh..........----------..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3upb B   3 KSVLEQLKQVTMVVADTGDFELIKKYKPVDATTNPSLILKAVKEQKYSNLVAETISKVKANNPDLNSDDLVKEIAIEILVSFGIKILDVIEGKVSSEVDARVSFNSATTIDYAKRIIARYESNGIPKDRVLIKIAATWEGIKAAKLLQKEGINCNLTLIFDKAQAKACAEAGVYLVSPFVGRITDWQMQQNNLKTFPAIADDDGVNSVKAIYKLYKSHGFKTIVMGASFRNVEQVIALAGCDALTISPVLLEELKNRDEHLEVKLT----------QISEADFRWLMNENAMATHKLAEGIRLFTKDTIELENIIKQNL 321
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262     |   -      |282       292       302       312         
                                                                                                                                                                                                                                                                                                   268        279
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3UPB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3UPB)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q5NFX0_FRATT | Q5NFX0)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0004801    sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity    Catalysis of the reaction: sedoheptulose 7-phosphate + D-glyceraldehyde 3-phosphate = D-erythrose 4-phosphate + D-fructose 6-phosphate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0006098    pentose-phosphate shunt    The glucose-6-phosphate catabolic process in which, coupled to NADPH synthesis, glucose-6-P is oxidized with the formation of carbon dioxide (CO2) and ribulose 5-phosphate; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q5NFX0_FRATT | Q5NFX0: 3igx 3te9 3tk7 3tkf 3tno 4e0c

(-) Related Entries Specified in the PDB File

3igx UNLIGANDED PROTEIN
3te9 K135M MUTANT COMPLEX WITH FRUCTOSE-6-PHOSPHATE
3tk7 COVALENT COMPLEX WITH FRUCTOSE-6-PHOSPHATE
3tkf K135M MUTANT COMPLEX WITH SEDOHEPTULOSE-7-PHOSPHATE RELATED ID: IDP02095 RELATED DB: TARGETDB
3tno COVALENT COMPLEX WITH SEDOHEPTULOSE-7-PHOSPHATE