3TE9 - JenaLib

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Title :   1.8 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF K135M MUTANT OF TRANSALDOLASE B (TALA) FROM FRANCISELLA TULARENSIS IN COMPLEX WITH FRUCTOSE 6-PHOSPHATE

Authors :   G. Minasov, S. H. Light, A. Halavaty, L. Shuvalova, L. Papazisi, W. F. An Center For Structural Genomics Of Infectious Diseases (Csg

Date :   12 Aug 11 (Deposition) - 24 Aug 11 (Release) - 05 Mar 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: A,B  (1x)

Keywords :   Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Alpha-Beta Barrel/Tim Barrel, Sedoheptulose-7- Phosphate:D-Glyceraldehyde-3-Phosphate Glyceronetransferase Activity, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. H. Light, G. Minasov, M. E. Duban, W. F. Anderson
Adherence To Burgi-Dunitz Stereochemical Principles Require Significant Structural Rearrangements In Schiff-Base Formation: Insights From Transaldolase Complexes.
Acta Crystallogr. , Sect. D V. 70 544 2014
PubMed-ID: 24531488 | Reference-DOI: 10.1107/S1399004713030666

Molecule 1 - TRANSALDOLASE
	Chains	:	A, B
	EC Number	:	2.2.1.2
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21 MAGIC
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Gene	:	FTT_1093C, TALA
	Mutation	:	YES
	Organism Scientific	:	FRANCISELLA TULARENSIS SUBSP. TULARENSIS
	Organism Taxid	:	119856
	Strain	:	SCHU S4

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 10)

No.	Name	Count	Type	Full Name
1	F6R	1	Ligand/Ion	FRUCTOSE -6-PHOSPHATE
2	PEG	2	Ligand/Ion	DI(HYDROXYETHYL)ETHER
3	PGE	6	Ligand/Ion	TRIETHYLENE GLYCOL
4	PO4	1	Ligand/Ion	PHOSPHATE ION

Biological Unit 1 (3, 3)

No.	Name	Count	Type	Full Name
1	F6R	1	Ligand/Ion	FRUCTOSE -6-PHOSPHATE
2	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
3	PGE	1	Ligand/Ion	TRIETHYLENE GLYCOL
4	PO4	-1	Ligand/Ion	PHOSPHATE ION

Biological Unit 2 (3, 7)

No.	Name	Count	Type	Full Name
1	F6R	-1	Ligand/Ion	FRUCTOSE -6-PHOSPHATE
2	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
3	PGE	5	Ligand/Ion	TRIETHYLENE GLYCOL
4	PO4	1	Ligand/Ion	PHOSPHATE ION

Biological Unit 3 (4, 10)

No.	Name	Count	Type	Full Name
1	F6R	1	Ligand/Ion	FRUCTOSE -6-PHOSPHATE
2	PEG	2	Ligand/Ion	DI(HYDROXYETHYL)ETHER
3	PGE	6	Ligand/Ion	TRIETHYLENE GLYCOL
4	PO4	1	Ligand/Ion	PHOSPHATE ION

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:18 , THR A:34 , ASN A:36 , MET A:135 , ASN A:157 , THR A:159 , SER A:179 , PHE A:181 , ARG A:184 , MET A:227 , ALA A:229 , SER A:230 , ARG A:232 , HOH A:468 , HOH A:469 , HOH A:519 , HOH A:526 , HOH A:589	BINDING SITE FOR RESIDUE F6R A 322
02	AC2	SOFTWARE	LYS A:10 , GLN A:11 , HOH A:608 , HOH A:616	BINDING SITE FOR RESIDUE PEG A 323
03	AC3	SOFTWARE	GLU A:291 , ASN A:292	BINDING SITE FOR RESIDUE PGE A 324
04	AC4	SOFTWARE	ARG B:184 , SER B:230 , ARG B:232 , GLU B:264 , HOH B:611 , HOH B:615	BINDING SITE FOR RESIDUE PO4 B 322
05	AC5	SOFTWARE	LYS B:10 , GLN B:11 , THR B:13 , MET B:14 , PGE B:328 , HOH B:532	BINDING SITE FOR RESIDUE PGE B 323
06	AC6	SOFTWARE	SER B:50 , ALA B:54 , LYS B:196 , ILE B:316 , GLN B:319 , ASN B:320 , HOH B:438	BINDING SITE FOR RESIDUE PGE B 324
07	AC7	SOFTWARE	TYR B:176 , LYS B:223	BINDING SITE FOR RESIDUE PGE B 325
08	AC8	SOFTWARE	ASN B:292 , HOH B:617	BINDING SITE FOR RESIDUE PEG B 326
09	AC9	SOFTWARE	HOH A:489 , LYS B:74	BINDING SITE FOR RESIDUE PGE B 327
10	BC1	SOFTWARE	LYS B:223 , ASP B:244 , PGE B:323 , HOH B:590	BINDING SITE FOR RESIDUE PGE B 328

(no "SS Bond" information available for 3TE9)

(no "Cis Peptide Bond" information available for 3TE9)

(no "SAP(SNP)/Variant" information available for 3TE9)

(no "PROSITE Motif" information available for 3TE9)

(no "Exon" information available for 3TE9)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:310
 aligned with Q5NFX0_FRATT | Q5NFX0 from UniProtKB/TrEMBL  Length:321

    Alignment length:320
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321
         Q5NFX0_FRATT     2 QKSVLEQLKQVTMVVADTGDFELIKKYKPVDATTNPSLILKAVKEQKYSNLVAETISKVKANNPDLNSDDLVKEIAIEILVSFGIKILDVIEGKVSSEVDARVSFNSATTIDYAKRIIARYESNGIPKDRVLIKIAATWEGIKAAKLLQKEGINCNLTLIFDKAQAKACAEAGVYLVSPFVGRITDWQMQQNNLKTFPAIADDDGVNSVKAIYKLYKSHGFKTIVMGASFRNVEQVIALAGCDALTISPVLLEELKNRDEHLEVKLTKNDDVVTQSPQISEADFRWLMNENAMATHKLAEGIRLFTKDTIELENIIKQNL 321
               SCOP domains d3te9a_ A: automated matches                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhheeeee..hhhhhh.....eeeehhhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.....eeee.hhhhh.hhhhhhhhhhhhhhhhhhh..hhh.eeeeee.hhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhh...eeee.hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh...eeee....hhhhhhh.....eeeehhhhhhhhhh..........----------..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3te9 A   2 QKSVLEQLKQVTMVVADTGDFELIKKYKPVDATTNPSLILKAVKEQKYSNLVAETISKVKANNPDLNSDDLVKEIAIEILVSFGIKILDVIEGKVSSEVDARVSFNSATTIDYAKRIIARYESNGIPKDRVLIMIAATWEGIKAAKLLQKEGINCNLTLIFDKAQAKACAEAGVYLVSPFVGRITDWQMQQNNLKTFPAIADDDGVNSVKAIYKLYKSHGFKTIVMGASFRNVEQVIALAGCDALTISPVLLEELKNRDEHLEVKLT----------QISEADFRWLMNENAMATHKLAEGIRLFTKDTIELENIIKQNL 321
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261      |  -       281       291       301       311       321
                                                                                                                                                                                                                                                                                                    268        279

Chain B from PDB  Type:PROTEIN  Length:313
 aligned with Q5NFX0_FRATT | Q5NFX0 from UniProtKB/TrEMBL  Length:321

    Alignment length:321
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320 
         Q5NFX0_FRATT     1 MQKSVLEQLKQVTMVVADTGDFELIKKYKPVDATTNPSLILKAVKEQKYSNLVAETISKVKANNPDLNSDDLVKEIAIEILVSFGIKILDVIEGKVSSEVDARVSFNSATTIDYAKRIIARYESNGIPKDRVLIKIAATWEGIKAAKLLQKEGINCNLTLIFDKAQAKACAEAGVYLVSPFVGRITDWQMQQNNLKTFPAIADDDGVNSVKAIYKLYKSHGFKTIVMGASFRNVEQVIALAGCDALTISPVLLEELKNRDEHLEVKLTKNDDVVTQSPQISEADFRWLMNENAMATHKLAEGIRLFTKDTIELENIIKQNL 321
               SCOP domains d3te9b_ B: automated matches                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhheeeee..hhhhhh.....eeeehhhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.....eeee.hhhhh.hhhhhhhhhhhhhhhhhhh..hhh.eeeeee.hhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhh...eeee.hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh...eeee....hhhhhhh.....eeeehhhhhhhhhh..........--------....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3te9 B   1 MQKSVLEQLKQVTMVVADTGDFELIKKYKPVDATTNPSLILKAVKEQKYSNLVAETISKVKANNPDLNSDDLVKEIAIEILVSFGIKILDVIEGKVSSEVDARVSFNSATTIDYAKRIIARYESNGIPKDRVLIMIAATWEGIKAAKLLQKEGINCNLTLIFDKAQAKACAEAGVYLVSPFVGRITDWQMQQNNLKTFPAIADDDGVNSVKAIYKLYKSHGFKTIVMGASFRNVEQVIALAGCDALTISPVLLEELKNRDEHLEVKLT--------SPQISEADFRWLMNENAMATHKLAEGIRLFTKDTIELENIIKQNL 321
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       | -      |280       290       300       310       320 
                                                                                                                                                                                                                                                                                                     268      277

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

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Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: TIM beta/alpha-barrel (3956)

Superfamily: Aldolase (457)

Family: automated matches (113)

Protein domain: automated matches (113)

Francisella tularensis [TaxId: 119856] (6)

1a	d3te9a_	A:
1b	d3te9b_	B:

(no "CATH Domain" information available for 3TE9)

(no "Pfam Domain" information available for 3TE9)

Asymmetric Unit(hide GO term definitions)

Chain A,B (Q5NFX0_FRATT | Q5NFX0)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0004801	sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	Catalysis of the reaction: sedoheptulose 7-phosphate + D-glyceraldehyde 3-phosphate = D-erythrose 4-phosphate + D-fructose 6-phosphate.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0006098	pentose-phosphate shunt	The glucose-6-phosphate catabolic process in which, coupled to NADPH synthesis, glucose-6-P is oxidized with the formation of carbon dioxide (CO2) and ribulose 5-phosphate; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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	Q5NFX0_FRATT \| Q5NFX0	:	3igx 3tk7 3tkf 3tno 3upb 4e0c

3igx	1.85 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF TRANSALDOLASE B (TALA) FROM FRANCISELLA TULARENSIS RELATED ID: IDP02095 RELATED DB: TARGETDB
3tk7
3tkf
3tno
4e0c

Description

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Chains, Units

Ligands, Modified Residues, Ions (4, 10)

Sites (10, 10)

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