3U35 - JenaLib

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Biological Unit 5 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE GENERAL STRESS FMN/FAD BINDING PROTEIN FROM THE PHYTOPATHOGEN XANTHOMONAS CITRI

Authors :   E. Hilario, Y. Li, L. Fan

Date :   04 Oct 11 (Deposition) - 27 Jun 12 (Release) - 23 Jan 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.50

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D  (1x)
Biol. Unit 2: A,D  (1x)
Biol. Unit 3: A,B  (1x)
Biol. Unit 4: B,C  (1x)
Biol. Unit 5: C,D  (1x)

Keywords :   Xanthomonas Citri General Stress Protein Fmn Binding Protein Fad Binding Protein, Pnp-Oxidase Like Fold, Fmn/Fad, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. Hilario, Y. Li, D. Niks, L. Fan
The Structure Of A Xanthomonas General Stress Protein Involved In Citrus Canker Reveals Its Flavin-Binding Property.
Acta Crystallogr. , Sect. D V. 68 846 2012
PubMed-ID: 22751670 | Reference-DOI: 10.1107/S0907444912014126

Molecule 1 - GENERAL STRESS PROTEIN
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A
	Expression System Strain	:	BL21(DE3)PLYS-S
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	GENERAL STRESS PROTEIN NCBI-GENEID 1156440, XAC2369
	Organism Common	:	CITRUS CANKER
	Organism Scientific	:	XANTHOMONAS AXONOPODIS PV. CITRI
	Organism Taxid	:	92829
	Strain	:	306

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B	C	D
Biological Unit 2 (1x)	:	A			D
Biological Unit 3 (1x)	:	A	B
Biological Unit 4 (1x)	:		B	C
Biological Unit 5 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	PGE	2	Ligand/Ion	TRIETHYLENE GLYCOL

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	PGE	2	Ligand/Ion	TRIETHYLENE GLYCOL

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	PGE	2	Ligand/Ion	TRIETHYLENE GLYCOL

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	PGE	1	Ligand/Ion	TRIETHYLENE GLYCOL

Biological Unit 4 (0, 0)

No.	Name	Count	Type	Full Name
1	PGE	-1	Ligand/Ion	TRIETHYLENE GLYCOL

Biological Unit 5 (1, 1)

No.	Name	Count	Type	Full Name
1	PGE	1	Ligand/Ion	TRIETHYLENE GLYCOL

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	THR A:40 , ALA A:91 , PHE A:92 , SER A:93 , HIS A:97 , THR B:40 , ALA B:91 , PHE B:92 , SER B:93 , PHE B:100	BINDING SITE FOR RESIDUE PGE A 201
2	AC2	SOFTWARE	THR C:40 , ALA C:91 , PHE C:92 , SER C:93 , HIS C:97 , THR D:40 , ALA D:91 , PHE D:92 , SER D:93 , HIS D:97 , PHE D:100	BINDING SITE FOR RESIDUE PGE D 201

(no "SS Bond" information available for 3U35)

Asymmetric Unit

No.	Residues
1	Gly A:66	-	Pro A:67
2	Gly B:66	-	Pro B:67
3	Gly C:66	-	Pro C:67
4	Gly D:66	-	Pro D:67

(no "SAP(SNP)/Variant" information available for 3U35)

(no "PROSITE Motif" information available for 3U35)

(no "Exon" information available for 3U35)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:142
 aligned with Q8PK08_XANAC | Q8PK08 from UniProtKB/TrEMBL  Length:182

    Alignment length:142
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163  
         Q8PK08_XANAC    24 TKELQEKFWKALKSDRTVMLGLDGVEDGHARPMTAQIEGDSGGPIWFFTSKDNALIAMLGQGRRVIGAFSSKGHDLFASISGSLREDTDPAMVDRLWNPYVAAWYEGGKTDPNLALLRLDADHAQIWLNESSLLAGIKVLLG 165
               SCOP domains d3u35a_ A: automated matches                                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh........hhhhh.......................hhhhhhh.............................hhhhhhhhhhhhhhh...hhhhh............................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3u35 A  24 TKELQEKFWKALKSDRTVMLGLDGVEDGHARPMTAQIEGDSGGPIWFFTSKDNALIAMLGQGRRVIGAFSSKGHDLFASISGSLREDTDPAMVDRLWNPYVAAWYEGGKTDPNLALLRLDADHAQIWLNESSLLAGIKVLLG 165
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163

Chain B from PDB  Type:PROTEIN  Length:141
 aligned with Q8PK08_XANAC | Q8PK08 from UniProtKB/TrEMBL  Length:182

    Alignment length:141
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163 
         Q8PK08_XANAC    24 TKELQEKFWKALKSDRTVMLGLDGVEDGHARPMTAQIEGDSGGPIWFFTSKDNALIAMLGQGRRVIGAFSSKGHDLFASISGSLREDTDPAMVDRLWNPYVAAWYEGGKTDPNLALLRLDADHAQIWLNESSLLAGIKVLL 164
               SCOP domains d3u35b_ B: automated matches                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh........hhhhh.......................hhhhhhh.............................hhhhhhhhhhhhhhhhh.hhhhh.............................. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3u35 B  24 TKELQEKFWKALKSDRTVMLGLDGVEDGHARPMTAQIEGDSGGPIWFFTSKDNALIAMLGQGRRVIGAFSSKGHDLFASISGSLREDTDPAMVDRLWNPYVAAWYEGGKTDPNLALLRLDADHAQIWLNESSLLAGIKVLL 164
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163

Chain C from PDB  Type:PROTEIN  Length:142
 aligned with Q8PK08_XANAC | Q8PK08 from UniProtKB/TrEMBL  Length:182

    Alignment length:142
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162  
         Q8PK08_XANAC    23 DTKELQEKFWKALKSDRTVMLGLDGVEDGHARPMTAQIEGDSGGPIWFFTSKDNALIAMLGQGRRVIGAFSSKGHDLFASISGSLREDTDPAMVDRLWNPYVAAWYEGGKTDPNLALLRLDADHAQIWLNESSLLAGIKVLL 164
               SCOP domains d3u35c_ C: automated matches                                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh........hhhh........................hhhhhh..............................hhhhhhhhhhhhhhh...hhhhh.............................. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3u35 C  23 DTKELQEKFWKALKSDRTVMLGLDGVEDGHARPMTAQIEGDSGGPIWFFTSKDNALIAMLGQGRRVIGAFSSKGHDLFASISGSLREDTDPAMVDRLWNPYVAAWYEGGKTDPNLALLRLDADHAQIWLNESSLLAGIKVLL 164
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162

Chain D from PDB  Type:PROTEIN  Length:141
 aligned with Q8PK08_XANAC | Q8PK08 from UniProtKB/TrEMBL  Length:182

    Alignment length:141
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163 
         Q8PK08_XANAC    24 TKELQEKFWKALKSDRTVMLGLDGVEDGHARPMTAQIEGDSGGPIWFFTSKDNALIAMLGQGRRVIGAFSSKGHDLFASISGSLREDTDPAMVDRLWNPYVAAWYEGGKTDPNLALLRLDADHAQIWLNESSLLAGIKVLL 164
               SCOP domains d3u35d_ D: automated matches                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh........hhhhh.......................hhhhhhhh............................hhhhhhhhhhhhhhh...hhhhh.............................. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3u35 D  24 TKELQEKFWKALKSDRTVMLGLDGVEDGHARPMTAQIEGDSGGPIWFFTSKDNALIAMLGQGRRVIGAFSSKGHDLFASISGSLREDTDPAMVDRLWNPYVAAWYEGGKTDPNLALLRLDADHAQIWLNESSLLAGIKVLL 164
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Split barrel-like (99)

Superfamily: FMN-binding split barrel (90)

Family: automated matches (24)

Protein domain: automated matches (24)

Xanthomonas axonopodis [TaxId: 92829] (2)

1a	d3u35a_	A:
1b	d3u35b_	B:
1c	d3u35c_	C:
1d	d3u35d_	D:

(no "CATH Domain" information available for 3U35)

(no "Pfam Domain" information available for 3U35)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (Q8PK08_XANAC | Q8PK08)

molecular function
	GO:0010181	FMN binding	Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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	Cis Peptide Bonds
		Gly A:66 - Pro A:67	[ RasMol ]
		Gly B:66 - Pro B:67	[ RasMol ]
		Gly C:66 - Pro C:67	[ RasMol ]
		Gly D:66 - Pro D:67	[ RasMol ]

Biological Units
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	3u35
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	Q8PK08_XANAC \| Q8PK08	:	3u34

1flm	FMN-BINDING PROTEIN
2i02	GENERAL STRESS PROTEIN OF COG3871 COMPLEXED WITH FMN
2ou5	PYRIDOXAMINE 5'-PHOSPHATE OXIDASE-RELATED, FMN-BINDING PROTEIN
3dmb	PUTATIVE GENERAL STRESS PROTEIN 26 WITH A PNP-OXIDASE LIKE FOLD
3u34

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 2)

Sites (2, 2)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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