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Title :   CRYSTAL STRUCTURE OF 3',5"-AMINOGLYCOSIDE PHOSPHOTRANSFERASE TYPE IIIA AMPPNP BUTIROSIN A COMPLEX

Authors :   A. M. Berghuis, D. H. Fong

Date :   30 Aug 11 (Deposition) - 19 Oct 11 (Release) - 19 Oct 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym./Biol. Unit : A

Keywords :   Protein Kinase, Phosphorylation, Transferase-Antibiotic Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. H. Fong, A. M. Berghuis
Structural Basis Of Aph(3')-Iiia-Mediated Resistance To N1-Substituted Aminoglycoside Antibiotics.
Antimicrob. Agents Chemother. V. 53 3049 2009
PubMed-ID: 19433564 | Reference-DOI: 10.1128/AAC.00062-09
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 4)

Sites (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:22 , MET A:26 , SER A:27 , ALA A:29 , VAL A:31 , TYR A:42 , LYS A:44 , PRO A:74 , MET A:90 , SER A:91 , GLU A:92 , ALA A:93 , LEU A:97 , SER A:194 , ASN A:195 , PHE A:197 , ILE A:207 , ASP A:208 , MG A:265 , MG A:266 , HOH A:269 , HOH A:293 , B31 A:305 , HOH A:326 , HOH A:337 , HOH A:353 , HOH A:358 , HOH A:399 , HOH A:402 , HOH A:432	BINDING SITE FOR RESIDUE ANP A 300
2	AC2	SOFTWARE	MET A:26 , GLU A:105 , GLU A:157 , ASP A:190 , ARG A:226 , GLU A:230 , ASP A:261 , GLU A:262 , PHE A:264 , HOH A:277 , HOH A:287 , HOH A:288 , ANP A:300 , HOH A:316 , HOH A:318 , HOH A:342 , HOH A:377 , HOH A:399 , HOH A:420	BINDING SITE FOR RESIDUE B31 A 305
3	AC3	SOFTWARE	ASP A:208 , ANP A:300 , HOH A:400 , HOH A:432	BINDING SITE FOR RESIDUE MG A 265
4	AC4	SOFTWARE	ASN A:195 , ASP A:208 , ANP A:300 , HOH A:353 , HOH A:399	BINDING SITE FOR RESIDUE MG A 266

SS Bonds (1, 1)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:263
 aligned with KKA3_ENTFL | P0A3Y5 from UniProtKB/Swiss-Prot  Length:264

    Alignment length:263
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261   
           KKA3_ENTFL     2 AKMRISPELKKLIEKYRCVKDTEGMSPAKVYKLVGENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCSEEYEDEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRADKWYDIAFCVRSIREDIGEEQYVELFFDLLGIKPDWEKIKYYILLDELF 264
               SCOP domains d3tm0a_ A: Type IIIa 3',5-aminoglycoside phosphotransferase                                                                                                                                                                                                             SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhh..eeee........eeeeee....eeeeeeehhhhh....hhhhhhhhhhhhh.......eeeeeee..eeeeeee....eehhhhh....hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhh.....hhhhhh......hhhhhhhhhhhh.....eeee........eeee..eeeee......eeeehhhhhhhhhhhhhhhh..hhhhhhhhhhhh...hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tm0 A   2 AKMRISPELKKLIEKYRCVKDTEGMSPAKVYKLVGENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCSEEYEDEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRADKWYDIAFCVRSIREDIGEEQYVELFFDLLGIKPDWEKIKYYILLDELF 264
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261

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	-	→ Gap	(green background, '-', border residues have a numbering label)
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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0 ; only for superseded entry 3H8P: 2,2)

Pfam Domains (0, 0)

Gene Ontology (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (KKA3_ENTFL | P0A3Y5)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0008910	kanamycin kinase activity	Catalysis of the reaction: ATP + kanamycin = ADP + 2 H(+) + kanamycin 3'-phosphate.
	GO:0016301	kinase activity	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016773	phosphotransferase activity, alcohol group as acceptor	Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor).
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0016310	phosphorylation	The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
	GO:0046677	response to antibiotic	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.

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