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(-) Description

Title :  LYTR-CPS2A-PSR FAMILY PROTEIN WITH BOUND OCTAPRENYL PYROPHOSPHATE LIPID
 
Authors :  Y. Kawai, J. Marles-Wright, R. M. Cleverley, R. Emmins, S. Ishikawa, M. N. Heinz, N. Khai Bui, C. N. Hoyland, N. Ogasawara, R. J. Lewis, W. Voll R. A. Daniel, J. Errington
Date :  16 Aug 11  (Deposition) - 12 Oct 11  (Release) - 09 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym./Biol. Unit :  A
Keywords :  Bacterial Cell Wall Techoic Acid Synthesis, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Kawai, J. Marles-Wright, R. M. Cleverley, R. Emmins, S. Ishikawa, M. Kuwano, N. Heinz, N. K. Bui, C. N. Hoyland, N. Ogasawara, R. J. Lewis, W. Vollmer, R. A. Daniel, J. Errington
A Widespread Family Of Bacterial Cell Wall Assembly Proteins.
Embo J. V. 30 4931 2011
PubMed-ID: 21964069  |  Reference-DOI: 10.1038/EMBOJ.2011.358

(-) Compounds

Molecule 1 - CPS2A, INTEGRAL MEMBRANE REGULATORY PROTEIN WZG
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: SPC02_0004, WZG
    Organism Scientific: STREPTOCOCCUS PNEUMONIAE
    Organism Taxid: 1313

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric/Biological Unit (2, 7)
No.NameCountTypeFull Name
1EDO6Ligand/Ion1,2-ETHANEDIOL
2ZTP1Ligand/Ion(2Z,6Z,10Z,14Z,18Z,22Z,26Z)-3,7,11,15,19,23,27,31-OCTAMETHYLDOTRIACONTA-2,6,10,14,18,22,26,30-OCTAEN-1-YL TRIHYDROGEN DIPHOSPHATE

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:18 , SER A:166 , TYR A:167 , LEU A:168 , TYR A:450 , HOH A:536BINDING SITE FOR RESIDUE EDO A 1
2AC2SOFTWAREPHE A:226 , ILE A:228 , GLY A:232 , ILE A:233 , ASP A:234 , ARG A:244 , ASP A:246 , VAL A:247 , MET A:251 , ARG A:267 , PHE A:315 , PHE A:318 , ARG A:362 , ARG A:364 , ARG A:374 , GLN A:378 , LEU A:386 , THR A:390 , MET A:418 , GLN A:425 , TYR A:432BINDING SITE FOR RESIDUE ZTP A 495
3AC3SOFTWAREASP A:333 , GLN A:334 , ASP A:373 , ASN A:377 , LYS A:380 , HOH A:525BINDING SITE FOR RESIDUE EDO A 496
4AC4SOFTWARETYR A:432BINDING SITE FOR RESIDUE EDO A 497
5AC5SOFTWAREARG A:364 , GLU A:416 , ASN A:420 , TYR A:458 , HOH A:528BINDING SITE FOR RESIDUE EDO A 498
6AC6SOFTWAREASN A:156 , HIS A:344 , PHE A:345 , PRO A:346 , VAL A:350 , HIS A:351 , GLN A:356BINDING SITE FOR RESIDUE EDO A 499
7AC7SOFTWAREGLN A:437 , ASP A:438 , LYS A:440 , SER A:466BINDING SITE FOR RESIDUE EDO A 500

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3TFL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3TFL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3TFL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3TFL)

(-) Exons   (0, 0)

(no "Exon" information available for 3TFL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:371
 aligned with Q4K376_STREE | Q4K376 from UniProtKB/TrEMBL  Length:484

    Alignment length:371
                                   122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482 
         Q4K376_STREE   113 SEYSLSVAVLADSEIENVTQLTSVTAPTGTDNENIQKLLADIKSSQNTDLTVNQSSSYLAAYKSLIAGETKAIVLNSVFENIIELEYPDYASKIKKIYTKGFTKKVEAPKTSKNQSFNIYVSGIDTYGPISSVSRSDVNILMTVNRDTKKILLTTTPRDAYVPIADGGNNQKDKLTHAGIYGVDSSIHTLENLYGVDINYYVRLNFTSFLKMIDLLGGVDVHNDQEFSALHGKFHFPVGNVHLDSEQALGFVRERYSLADGDRDRGRNQQKVIVAILQKLTSTEALKNYSTIINSLQDSIQTNVPLETMINLVNAQLESGGNYKVNSQDLKGTGRMDLPSYAMPDSNLYVMEIDDSSLAVVKAAIQDVMEG 483
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee......hhhhh.eeee....hhhhhhhhhhhhhhhhh...eeee..hhhhhhhhhhh.....eeeehhhhhhhhhhh.hhhhheeeeeeeeee............eeeeeeeee...........eeeeeeeeee....eeeeee.....eeeehhhhh.eeee..hhhhhhhhhhhhhhhhhhh....eeeeeehhhhhhhhhhh..eeeee...eee....eee..eeeeehhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee..hhhhhhhhhhhhhhhh...eeeeee..eeee..............eeeehhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tfl A 110 SEYSLSVAVLADSEIENVTQLTSVTAPTGTDNENIQKLLADIKSSQNTDLTVNQSSSYLAAYKSLIAGETKAIVLNSVFENIIELEYPDYASKIKKIYTKGFTKKVEAPKTSKNQSFNIYVSGIDTYGPISSVSRSDVNILMTVNRDTKKILLTTTPRDAYVPIADGGNNQKDKLTHAGIYGVDSSIHTLENLYGVDINYYVRLNFTSFLKMIDLLGGVDVHNDQEFSALHGKFHFPVGNVHLDSEQALGFVRERYSLADGDRDRGRNQQKVIVAILQKLTSTEALKNYSTIINSLQDSIQTNVPLETMINLVNAQLESGGNYKVNSQDLKGTGRMDLPSYAMPDSNLYVMEIDDSSLAVVKAAIQDVMEG 480
                                   119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3TFL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3TFL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3TFL)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q4K376_STREE | Q4K376)
biological process
    GO:0006260    DNA replication    The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q4K376_STREE | Q4K376: 3tel 3tep

(-) Related Entries Specified in the PDB File

3tel 3tep