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(-) Description

Title :  LYTR-CPS2A-PSR FAMILY PROTEIN WITH BOUND OCTAPRENYL PYROPHOSPHATE LIPID AND MANGANESE ION
 
Authors :  Y. Kawai, J. Marles-Wright, R. M. Cleverley, R. Emmins, S. Ishikawa, M. N. Heinz, N. Khai Bui, C. N. Hoyland, N. Ogasawara, R. J. Lewis, W. Voll R. A. Daniel, J. Errington
Date :  15 Aug 11  (Deposition) - 12 Oct 11  (Release) - 09 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Cell Wall Techoic Acid Synthesis, Replication, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Kawai, J. Marles-Wright, R. M. Cleverley, R. Emmins, S. Ishikawa, M. Kuwano, N. Heinz, N. K. Bui, C. N. Hoyland, N. Ogasawara, R. J. Lewis, W. Vollmer, R. A. Daniel, J. Errington
A Widespread Family Of Bacterial Cell Wall Assembly Proteins.
Embo J. V. 30 4931 2011
PubMed-ID: 21964069  |  Reference-DOI: 10.1038/EMBOJ.2011.358

(-) Compounds

Molecule 1 - CPS2A, INTEGRAL MEMBRANE REGULATORY PROTEIN WZG
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: WZG, SPC02_0004
    Mutation: YES
    Organism Scientific: STREPTOCOCCUS PNEUMONIAE
    Organism Taxid: 1313
    Other Details: PLASMID

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 9)

Asymmetric/Biological Unit (4, 9)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2EDO3Ligand/Ion1,2-ETHANEDIOL
3MN1Ligand/IonMANGANESE (II) ION
4ZTP1Ligand/Ion(2Z,6Z,10Z,14Z,18Z,22Z,26Z)-3,7,11,15,19,23,27,31-OCTAMETHYLDOTRIACONTA-2,6,10,14,18,22,26,30-OCTAEN-1-YL TRIHYDROGEN DIPHOSPHATE

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:53 , ILE A:228 , GLY A:232 , ASP A:234 , ASP A:246 , MET A:251 , LEU A:313 , ASN A:314 , PHE A:315 , VAL A:361 , ARG A:362 , ARG A:364 , ARG A:374 , GLN A:378 , LEU A:389 , MET A:418 , LEU A:421 , TYR A:432 , MN A:495 , HOH A:623 , HOH A:659 , HOH A:750BINDING SITE FOR RESIDUE ZTP A 1
2AC2SOFTWAREZTP A:1 , ASP A:234 , ASP A:246 , HOH A:750 , HOH A:751BINDING SITE FOR RESIDUE MN A 495
3AC3SOFTWARELYS A:205 , ASN A:397BINDING SITE FOR RESIDUE ACT A 496
4AC4SOFTWAREHOH A:50 , ARG A:364 , GLU A:416 , ILE A:419 , ASN A:420 , EDO A:502BINDING SITE FOR RESIDUE ACT A 497
5AC5SOFTWARESER A:337 , ALA A:338 , LEU A:339 , HIS A:340 , GLY A:341 , GLU A:363BINDING SITE FOR RESIDUE ACT A 498
6AC6SOFTWARETYR A:270 , PRO A:272BINDING SITE FOR RESIDUE ACT A 499
7AC7SOFTWARETYR A:432 , HOH A:570 , HOH A:678BINDING SITE FOR RESIDUE EDO A 500
8AC8SOFTWAREHOH A:61 , GLN A:410 , THR A:411BINDING SITE FOR RESIDUE EDO A 501
9AC9SOFTWAREASP A:371 , GLU A:416 , TYR A:458 , MET A:460 , ACT A:497 , HOH A:521 , HOH A:557BINDING SITE FOR RESIDUE EDO A 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3TEL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3TEL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3TEL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3TEL)

(-) Exons   (0, 0)

(no "Exon" information available for 3TEL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:372
 aligned with Q4K376_STREE | Q4K376 from UniProtKB/TrEMBL  Length:484

    Alignment length:372
                                   122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482  
         Q4K376_STREE   113 SEYSLSVAVLADSEIENVTQLTSVTAPTGTDNENIQKLLADIKSSQNTDLTVNQSSSYLAAYKSLIAGETKAIVLNSVFENIIELEYPDYASKIKKIYTKGFTKKVEAPKTSKNQSFNIYVSGIDTYGPISSVSRSDVNILMTVNRDTKKILLTTTPRDAYVPIADGGNNQKDKLTHAGIYGVDSSIHTLENLYGVDINYYVRLNFTSFLKMIDLLGGVDVHNDQEFSALHGKFHFPVGNVHLDSEQALGFVRERYSLADGDRDRGRNQQKVIVAILQKLTSTEALKNYSTIINSLQDSIQTNVPLETMINLVNAQLESGGNYKVNSQDLKGTGRMDLPSYAMPDSNLYVMEIDDSSLAVVKAAIQDVMEGR 484
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeee......hhhhh.eeee....hhhhhhhhhhhhhhhhh...eeee..hhhhhhhhhhh.....eeee..hhhhhhhhh.hhhhheeeeeeeeee............eeeeeeeee...........eeeeeeeeee....eeeeee....eeeeehhhhh.eeee..hhhhhhhhhhhhhhhhhhh....eeeeeehhhhhhhhhhh..eeeee...eee....eee..eeeeehhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee..hhhhhhhhhhhhhhhh...eeeeee..eeee..............eeeehhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3tel A 110 SEYSLSVAVLADSEIENVTQLTSVTAPTGTDNENIQKLLADIKSSQNTDLTVNQSSSYLAAYKSLIAGETKAIVLNSVFENIIELEYPDYASKIKKIYTKGFTKKVEAPKTSKNQSFNIYVSGIDTYGPISSVSRSDVNILMTVNRDTKKILLTTTPADAYVPIADGGNNQKDKLTHAGIYGVDSSIHTLENLYGVDINYYVRLNFTSFLKMIDLLGGVDVHNDQEFSALHGKFHFPVGNVHLDSEQALGFVRERYSLADGDRDRGRNQQKVIVAILQKLTSTEALKNYSTIINSLQDSIQTNVPLETMINLVNAQLESGGNYKVNSQDLKGTGRMDLPSYAMPDSNLYVMEIDDSSLAVVKAAIQDVMEGR 481
                                   119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3TEL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3TEL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3TEL)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q4K376_STREE | Q4K376)
biological process
    GO:0006260    DNA replication    The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q4K376_STREE | Q4K376: 3tep 3tfl

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