3TEM - JenaLib

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:173 , HIS A:177 , CYS A:222	BINDING SITE FOR RESIDUE ZN A 231
2	AC2	SOFTWARE	HIS A:11 , LYS A:15 , SER A:16 , PHE A:17 , ASN A:18 , SER A:20 , PRO A:102 , LEU A:103 , TYR A:104 , TRP A:105 , PHE A:106 , THR A:147 , THR A:148 , GLY A:149 , GLY A:150 , TYR A:155 , GLU A:193 , ARG A:200 , HOH A:345 , HOH A:350 , HOH A:380 , HOH A:387 , HOH A:402 , HOH A:406 , HOH A:448 , HOH A:507 , ASN B:66 , ASP B:117 , HOH B:343 , 6A1 B:501	BINDING SITE FOR RESIDUE FAD A 232
3	AC3	SOFTWARE	TRP A:105 , PHE A:106 , GLU A:193 , FAD A:232 , PHE B:126 , GLY B:174 , PHE B:178 , HOH B:325 , HOH B:348 , HOH B:352 , HOH B:540	BINDING SITE FOR RESIDUE 6A1 B 501
4	AC4	SOFTWARE	HIS B:173 , HIS B:177 , CYS B:222	BINDING SITE FOR RESIDUE ZN B 231
5	AC5	SOFTWARE	ASN A:66 , ASP A:117 , 6A1 A:501 , HOH A:536 , HIS B:11 , LYS B:15 , SER B:16 , PHE B:17 , ASN B:18 , SER B:20 , PRO B:102 , LEU B:103 , TYR B:104 , TRP B:105 , PHE B:106 , THR B:147 , THR B:148 , GLY B:149 , GLY B:150 , TYR B:155 , GLU B:193 , GLU B:197 , ARG B:200 , HOH B:307 , HOH B:309 , HOH B:331 , HOH B:332 , HOH B:333 , HOH B:360 , HOH B:448	BINDING SITE FOR RESIDUE FAD B 232
6	AC6	SOFTWARE	PHE A:126 , ILE A:128 , GLY A:174 , PHE A:178 , HOH A:282 , HOH A:318 , HOH A:351 , HOH A:438 , TRP B:105 , PHE B:106 , FAD B:232 , HOH B:541	BINDING SITE FOR RESIDUE 6A1 A 501
7	AC7	SOFTWARE	ASP A:52 , ILE A:55 , GLY A:57 , GLU A:218	BINDING SITE FOR RESIDUE IMD A 1

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (5, 10)

PROSITE Motifs (0, 0)

Exons (6, 12)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:228
 aligned with NQO2_HUMAN | P16083 from UniProtKB/Swiss-Prot  Length:231

    Alignment length:228
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222        
           NQO2_HUMAN     3 GKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFCGFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFG 230
               SCOP domains d3tema_ A: Quinone reductase type 2 (menadione reductase)                                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee......hhhhhhhhhhhhhhhhhh.eeeeee..........hhhhh..........hhhhhhhhhhhhh..hhhhhhhhhhhhhh.eeeeeee......hhhhhhhhhhhh..........hhhhh.....eeeeeee...............hhhhhhhhhhh........ee...eee......hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------R------------G-----------------F----------D-----------------------------------------------------------------------------------------------------------------------------A---------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) 1------------------------------------------------------Exon 1.12b  PDB: A:57-100 UniProt: 58-101   Exon 1.13  PDB: A:101-138             Exon 1.14  PDB: A:139-172         Exon 1.15b  PDB: A:173-229 UniProt: 174-231 [INCOMPLETE]  Transcript 1 (1)
           Transcript 1 (2) Exon 1.11  PDB: A:2-57 UniProt: 3-58                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 3tem A   2 GKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFCGFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFG 229
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221

Chain B from PDB  Type:PROTEIN  Length:228
 aligned with NQO2_HUMAN | P16083 from UniProtKB/Swiss-Prot  Length:231

    Alignment length:228
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222        
           NQO2_HUMAN     3 GKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFCGFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFG 230
               SCOP domains d3temb_ B: Quinone reductase type 2 (menadione reductase)                                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee......hhhhhhhhhhhhhhhhh..eeeeee..........hhhhh..........hhhhhhhhhhhh...hhhhhhhhhhhhhh.eeeeeee......hhhhhhhhhhhh..........hhhhh.....eeeeeee...............hhhhhhhhhhh........ee...eee......hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------R------------G-----------------F----------D-----------------------------------------------------------------------------------------------------------------------------A---------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) 1------------------------------------------------------Exon 1.12b  PDB: B:57-100 UniProt: 58-101   Exon 1.13  PDB: B:101-138             Exon 1.14  PDB: B:139-172         Exon 1.15b  PDB: B:173-229 UniProt: 174-231 [INCOMPLETE]  Transcript 1 (1)
           Transcript 1 (2) Exon 1.11  PDB: B:2-57 UniProt: 3-58                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 3tem B   2 GKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFCGFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFG 229
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (NQO2_HUMAN | P16083)

molecular function
	GO:0008753	NADPH dehydrogenase (quinone) activity	Catalysis of the reaction: NADPH + H+ + a quinone = NADP+ + a quinol.
	GO:0009055	electron carrier activity	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0007613	memory	The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task).
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005654	nucleoplasm	That part of the nuclear content other than the chromosomes or the nucleolus.

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	Cis Peptide Bonds
		Ile A:128 - Pro A:129	[ RasMol ]
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	3tem
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	NQO2_HUMAN \| P16083
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	1.10.99.2
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 7)

Sites (7, 7)