3T7T - JenaLib

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Title :   CRYSTAL STRUCTURE OF COMPLEX OF SAH AND BVU_3255, A METHYLTRANSFERASE FROM BACTEROIDES VULGATUS ATCC 8482

Authors :   V. Kumar, J. Sivaraman

Date :   31 Jul 11 (Deposition) - 12 Oct 11 (Release) - 12 Oct 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.50

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Small Molecule Methyltransferase, Bvu_3255, Rossmann Fold, Methyltrasnferase, Sam, Methylation, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   V. Kumar, J. Sivaraman
Structural Characterization Of Bvu_3255, A Methyltransferas From Human Intestine Antibiotic Resistant Pathogen Bacteroides Vulgatus
J. Struct. Biol. 2011
PubMed-ID: 21872662 | Reference-DOI: 10.1016/J.JSB.2011.08.007

Molecule 1 - PUTATIVE METHYLTRANSFERASE
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PGS21A
	Expression System Strain	:	(DE3)BL21
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	BVU_3255
	Organism Scientific	:	BACTEROIDES VULGATUS
	Organism Taxid	:	435590
	Strain	:	ATCC 8482

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 4)

No.	Name	Count	Type	Full Name
1	SAH	4	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	SAH	1	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	SAH	1	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	SAH	1	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE

Biological Unit 4 (1, 1)

No.	Name	Count	Type	Full Name
1	SAH	1	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:25 , GLN A:26 , GLY A:54 , CYS A:55 , GLY A:56 , GLN A:60 , ASP A:76 , PHE A:77 , PHE A:81 , SER A:104 , MET A:105 , GLU A:121 , GLY A:122 , ALA A:123 , ASN A:126 , HOH A:306 , HOH A:334	BINDING SITE FOR RESIDUE SAH A 300
2	AC2	SOFTWARE	ARG B:25 , GLN B:26 , GLY B:54 , GLY B:56 , GLN B:60 , ASP B:76 , PHE B:77 , PHE B:81 , GLY B:103 , SER B:104 , MET B:105 , GLU B:121 , GLY B:122 , ALA B:123 , ASN B:126 , HOH B:271 , HOH B:276 , HOH B:309	BINDING SITE FOR RESIDUE SAH B 300
3	AC3	SOFTWARE	ARG C:25 , GLN C:26 , GLY C:27 , GLY C:54 , CYS C:55 , GLY C:56 , GLN C:60 , ASP C:76 , PHE C:77 , PHE C:81 , GLY C:103 , SER C:104 , MET C:105 , GLU C:121 , GLY C:122 , ALA C:123 , ASN C:126 , HOH C:272 , HOH C:281 , HOH C:288	BINDING SITE FOR RESIDUE SAH C 300
4	AC4	SOFTWARE	ARG D:25 , GLN D:26 , GLY D:27 , GLY D:54 , CYS D:55 , GLY D:56 , GLN D:60 , ASP D:76 , PHE D:77 , PHE D:81 , GLY D:103 , SER D:104 , MET D:105 , GLU D:121 , GLY D:122 , ALA D:123 , ASN D:126 , HOH D:277 , HOH D:299	BINDING SITE FOR RESIDUE SAH D 300

(no "SS Bond" information available for 3T7T)

(no "Cis Peptide Bond" information available for 3T7T)

(no "SAP(SNP)/Variant" information available for 3T7T)

(no "PROSITE Motif" information available for 3T7T)

(no "Exon" information available for 3T7T)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:245
 aligned with A6L5C0_BACV8 | A6L5C0 from UniProtKB/TrEMBL  Length:262

    Alignment length:245
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253     
         A6L5C0_BACV8    14 NLICDFFLNTERQGPGSPEVTLKALSFIDNLTNKSLIADLGCGTGGQTMILAQHVPGKITGIDFFPGFIERFNKNAEKLNLQNRVKGIVGSMDDLSFEKDSLDLIWSEGAIYNIGFERGLKEWRNYLKPGGYLAVSESVWFTDQRPAEIHDFWMSAYTEIDTVPNKVAQIQKAGYIPVATFILPENCWIEHYFAPQAKAEEIFRRKHAGSRIVEELITSNHHEAELYSKYKAYYGYAFFICKKGF 258
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh.......hhhhhhhhhh.........eeeee....hhhhhhhhh....eeeeee.hhhhhhhhhhhhhhhhhhh.eeeee............eeeeeee.hhhhhhhhhhhhhhh..eeeeeeeeeeeeee.....hhhhhhhhhhhh...eehhhhhhhhhhh.eeeeeeee.hhhhh.....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3t7t A  14 NLICDFFLNTERQGPGSPEVTLKALSFIDNLTNKSLIADLGCGTGGQTMILAQHVPGKITGIDFFPGFIERFNKNAEKLNLQNRVKGIVGSMDDLSFEKDSLDLIWSEGAIYNIGFERGLKEWRNYLKPGGYLAVSESVWFTDQRPAEIHDFWMSAYTEIDTVPNKVAQIQKAGYIPVATFILPENCWIEHYFAPQAKAEEIFRRKHAGSRIVEELITSNHHEAELYSKYKAYYGYAFFICKKGF 258
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253

Chain B from PDB  Type:PROTEIN  Length:245
 aligned with A6L5C0_BACV8 | A6L5C0 from UniProtKB/TrEMBL  Length:262

    Alignment length:245
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253     
         A6L5C0_BACV8    14 NLICDFFLNTERQGPGSPEVTLKALSFIDNLTNKSLIADLGCGTGGQTMILAQHVPGKITGIDFFPGFIERFNKNAEKLNLQNRVKGIVGSMDDLSFEKDSLDLIWSEGAIYNIGFERGLKEWRNYLKPGGYLAVSESVWFTDQRPAEIHDFWMSAYTEIDTVPNKVAQIQKAGYIPVATFILPENCWIEHYFAPQAKAEEIFRRKHAGSRIVEELITSNHHEAELYSKYKAYYGYAFFICKKGF 258
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh........hhhhhhhhhh.........eeeee....hhhhhhhhh....eeeeee.hhhhhhhhhhhhhhh.....eeeee............eeeeeee.hhhhhhhhhhhhhhh..eeeeeeeeeeeeee.....hhhhhhhhhhhh...eehhhhhhhhhhh.eeeeeeee.hhhhh......hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh..eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3t7t B  14 NLICDFFLNTERQGPGSPEVTLKALSFIDNLTNKSLIADLGCGTGGQTMILAQHVPGKITGIDFFPGFIERFNKNAEKLNLQNRVKGIVGSMDDLSFEKDSLDLIWSEGAIYNIGFERGLKEWRNYLKPGGYLAVSESVWFTDQRPAEIHDFWMSAYTEIDTVPNKVAQIQKAGYIPVATFILPENCWIEHYFAPQAKAEEIFRRKHAGSRIVEELITSNHHEAELYSKYKAYYGYAFFICKKGF 258
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253

Chain C from PDB  Type:PROTEIN  Length:232
 aligned with A6L5C0_BACV8 | A6L5C0 from UniProtKB/TrEMBL  Length:262

    Alignment length:245
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253     
         A6L5C0_BACV8    14 NLICDFFLNTERQGPGSPEVTLKALSFIDNLTNKSLIADLGCGTGGQTMILAQHVPGKITGIDFFPGFIERFNKNAEKLNLQNRVKGIVGSMDDLSFEKDSLDLIWSEGAIYNIGFERGLKEWRNYLKPGGYLAVSESVWFTDQRPAEIHDFWMSAYTEIDTVPNKVAQIQKAGYIPVATFILPENCWIEHYFAPQAKAEEIFRRKHAGSRIVEELITSNHHEAELYSKYKAYYGYAFFICKKGF 258
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh........hhhhhhhhhh.........eeeee....hhhhhhhhh....eeeeee.hhhhhhhhhhhhhhh.....eeeee............eeeeee..hhhhhhhhhhhhhhh..eeeeeeeeeeeeee....-------------...eehhhhhhhhhhhheeeeeeee..hhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh..eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3t7t C  14 NLICDFFLNTERQGPGSPEVTLKALSFIDNLTNKSLIADLGCGTGGQTMILAQHVPGKITGIDFFPGFIERFNKNAEKLNLQNRVKGIVGSMDDLSFEKDSLDLIWSEGAIYNIGFERGLKEWRNYLKPGGYLAVSESVWFTDQ-------------TEIDTVPNKVAQIQKAGYIPVATFILPENCWIEHYFAPQAKAEEIFRRKHAGSRIVEELITSNHHEAELYSKYKAYYGYAFFICKKGF 258
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153   |     -       173       183       193       203       213       223       233       243       253     
                                                                                                                                                                         157           171

Chain D from PDB  Type:PROTEIN  Length:245
 aligned with A6L5C0_BACV8 | A6L5C0 from UniProtKB/TrEMBL  Length:262

    Alignment length:245
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253     
         A6L5C0_BACV8    14 NLICDFFLNTERQGPGSPEVTLKALSFIDNLTNKSLIADLGCGTGGQTMILAQHVPGKITGIDFFPGFIERFNKNAEKLNLQNRVKGIVGSMDDLSFEKDSLDLIWSEGAIYNIGFERGLKEWRNYLKPGGYLAVSESVWFTDQRPAEIHDFWMSAYTEIDTVPNKVAQIQKAGYIPVATFILPENCWIEHYFAPQAKAEEIFRRKHAGSRIVEELITSNHHEAELYSKYKAYYGYAFFICKKGF 258
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh........hhhhhhhhhh.........eeeee....hhhhhhhhh....eeeeee.hhhhhhhhhhhhhh......eeeee............eeeeeee.hhhhhhhhhhhhhhh..eeeeeeeeeeeeee.....hhhhhhhhhhhh...eehhhhhhhhhhh.eeeeeeee.hhhhh.....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3t7t D  14 NLICDFFLNTERQGPGSPEVTLKALSFIDNLTNKSLIADLGCGTGGQTMILAQHVPGKITGIDFFPGFIERFNKNAEKLNLQNRVKGIVGSMDDLSFEKDSLDLIWSEGAIYNIGFERGLKEWRNYLKPGGYLAVSESVWFTDQRPAEIHDFWMSAYTEIDTVPNKVAQIQKAGYIPVATFILPENCWIEHYFAPQAKAEEIFRRKHAGSRIVEELITSNHHEAELYSKYKAYYGYAFFICKKGF 258
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3T7T)

(no "CATH Domain" information available for 3T7T)

(no "Pfam Domain" information available for 3T7T)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (A6L5C0_BACV8 | A6L5C0)


GO:0051539	4 iron, 4 sulfur cluster binding	Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
GO:0051536	iron-sulfur cluster binding	Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.

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	3t7t
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	A6L5C0_BACV8 \| A6L5C0	:	3e7p 3t7r 3t7s

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