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(-) Description

Title :  CRYSTAL STRUCTURE OF APO BVU_3255, A METHYLTRANSFERASE FROM BACTEROIDES VULGATUS ATCC 8482
 
Authors :  V. Kumar, J. Sivaraman
Date :  31 Jul 11  (Deposition) - 12 Oct 11  (Release) - 12 Oct 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Small Molecule Methyltransferase, Bvu_3255, Rossmann Fold, Methyltrasnferase, Sam, Methylation, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Kumar, J. Sivaraman
Structural Characterization Of Bvu_3255, A Methyltransferas From Human Intestine Antibiotic Resistant Pathogen Bacteroides Vulgatus
J. Struct. Biol. 2011
PubMed-ID: 21872662  |  Reference-DOI: 10.1016/J.JSB.2011.08.007

(-) Compounds

Molecule 1 - PUTATIVE METHYLTRANSFERASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGS21A
    Expression System Strain: (DE3)BL21
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BVU_3255
    Organism Scientific: BACTEROIDES VULGATUS
    Organism Taxid: 435590
    Strain: ATCC 8482

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
16PP2Ligand/Ion3-[(2Z)-3-METHYLPENT-2-EN-1-YL]BENZENE-1,2-DIOL
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
16PP1Ligand/Ion3-[(2Z)-3-METHYLPENT-2-EN-1-YL]BENZENE-1,2-DIOL
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
16PP1Ligand/Ion3-[(2Z)-3-METHYLPENT-2-EN-1-YL]BENZENE-1,2-DIOL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:125BINDING SITE FOR RESIDUE 6PP A 302
2AC2SOFTWARETYR B:125BINDING SITE FOR RESIDUE 6PP B 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3T7R)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3T7R)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3T7R)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3T7R)

(-) Exons   (0, 0)

(no "Exon" information available for 3T7R)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:248
 aligned with A6L5C0_BACV8 | A6L5C0 from UniProtKB/TrEMBL  Length:262

    Alignment length:248
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250        
         A6L5C0_BACV8    11 FDVNLICDFFLNTERQGPGSPEVTLKALSFIDNLTNKSLIADLGCGTGGQTMILAQHVPGKITGIDFFPGFIERFNKNAEKLNLQNRVKGIVGSMDDLSFEKDSLDLIWSEGAIYNIGFERGLKEWRNYLKPGGYLAVSESVWFTDQRPAEIHDFWMSAYTEIDTVPNKVAQIQKAGYIPVATFILPENCWIEHYFAPQAKAEEIFRRKHAGSRIVEELITSNHHEAELYSKYKAYYGYAFFICKKGF 258
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh........hhhhhhhhhh.........eeeee....hhhhhhhhh....eeeeee.hhhhhhhhhhhhhhh.....eeeee............eeeeeee.hhhhhhhhhhhhhhh..eeeeeeeeeeeeee.....hhhhhhhhhhhh...eehhhhhhhhhhhheeeeeeee.hhhhh...hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3t7r A  11 FDVNLICDFFLNTERQGPGSPEVTLKALSFIDNLTNKSLIADLGCGTGGQTMILAQHVPGKITGIDFFPGFIERFNKNAEKLNLQNRVKGIVGSMDDLSFEKDSLDLIWSEGAIYNIGFERGLKEWRNYLKPGGYLAVSESVWFTDQRPAEIHDFWMSAYTEIDTVPNKVAQIQKAGYIPVATFILPENCWIEHYFAPQAKAEEIFRRKHAGSRIVEELITSNHHEAELYSKYKAYYGYAFFICKKGF 258
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250        


Chain B from PDB  Type:PROTEIN  Length:248
 aligned with A6L5C0_BACV8 | A6L5C0 from UniProtKB/TrEMBL  Length:262

    Alignment length:248
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250        
         A6L5C0_BACV8    11 FDVNLICDFFLNTERQGPGSPEVTLKALSFIDNLTNKSLIADLGCGTGGQTMILAQHVPGKITGIDFFPGFIERFNKNAEKLNLQNRVKGIVGSMDDLSFEKDSLDLIWSEGAIYNIGFERGLKEWRNYLKPGGYLAVSESVWFTDQRPAEIHDFWMSAYTEIDTVPNKVAQIQKAGYIPVATFILPENCWIEHYFAPQAKAEEIFRRKHAGSRIVEELITSNHHEAELYSKYKAYYGYAFFICKKGF 258
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh........hhhhhhhhhh.........eeeee....hhhhhhhhh....eeeeee.hhhhhhhhhhhhhhh.....eeeee............eeeeeee.hhhhhhhhhhhhhhh..eeeeeeeeeeeeee.....hhhhhhhhhhhh...eehhhhhhhhhhhheeeeeeee.hhhhh...hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3t7r B  11 FDVNLICDFFLNTERQGPGSPEVTLKALSFIDNLTNKSLIADLGCGTGGQTMILAQHVPGKITGIDFFPGFIERFNKNAEKLNLQNRVKGIVGSMDDLSFEKDSLDLIWSEGAIYNIGFERGLKEWRNYLKPGGYLAVSESVWFTDQRPAEIHDFWMSAYTEIDTVPNKVAQIQKAGYIPVATFILPENCWIEHYFAPQAKAEEIFRRKHAGSRIVEELITSNHHEAELYSKYKAYYGYAFFICKKGF 258
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3T7R)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3T7R)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3T7R)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (A6L5C0_BACV8 | A6L5C0)
molecular function
    GO:0051539    4 iron, 4 sulfur cluster binding    Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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 Related Entries

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UniProtKB/TrEMBL
        A6L5C0_BACV8 | A6L5C0: 3e7p 3t7s 3t7t

(-) Related Entries Specified in the PDB File

3e7p 3t7s 3t7t