Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF STECCHERINUM OCHRACEUM LACCASE OBTAINED BY MULTI-CRYSTALS COMPOSITE DATA COLLECTION TECHNIQUE (10% DOSE)
 
Authors :  M. Ferraroni, F. Briganti, I. Matera, M. Kolomytseva, L. Golovleva, A. Scozzafava, A. M. Chernykh
Date :  29 Jul 11  (Deposition) - 18 Apr 12  (Release) - 03 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  A,B,C  (1x)
Keywords :  Beta Barrel, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Ferraroni, I. Matera, A. Chernykh, M. Kolomytseva, L. A. Golovleva A. Scozzafava, F. Briganti
Reaction Intermediates And Redox State Changes In A Blue Laccase From Steccherinum Ochraceum Observed By Crystallographic High/Low X-Ray Dose Experiments.
J. Inorg. Biochem. V. 111 203 2012
PubMed-ID: 22341982  |  Reference-DOI: 10.1016/J.JINORGBIO.2012.01.011

(-) Compounds

Molecule 1 - LACCASE
    Chains: A, B, C
    EC Number: 1.10.3.2
    Organism Scientific: STECCHERINUM OCHRACEUM
    Organism Taxid: 92696
    Strain: 1833

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C
Biological Unit 4 (1x): ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 36)

Asymmetric Unit (5, 36)
No.NameCountTypeFull Name
1CBS6Ligand/IonDI(N-ACETYL-D-GLUCOSAMINE)
2CU12Ligand/IonCOPPER (II) ION
3GOL8Ligand/IonGLYCEROL
4OXY3Ligand/IonOXYGEN MOLECULE
5SO47Ligand/IonSULFATE ION
Biological Unit 1 (4, 7)
No.NameCountTypeFull Name
1CBS2Ligand/IonDI(N-ACETYL-D-GLUCOSAMINE)
2CU-1Ligand/IonCOPPER (II) ION
3GOL1Ligand/IonGLYCEROL
4OXY1Ligand/IonOXYGEN MOLECULE
5SO43Ligand/IonSULFATE ION
Biological Unit 2 (4, 10)
No.NameCountTypeFull Name
1CBS2Ligand/IonDI(N-ACETYL-D-GLUCOSAMINE)
2CU-1Ligand/IonCOPPER (II) ION
3GOL5Ligand/IonGLYCEROL
4OXY1Ligand/IonOXYGEN MOLECULE
5SO42Ligand/IonSULFATE ION
Biological Unit 3 (4, 7)
No.NameCountTypeFull Name
1CBS2Ligand/IonDI(N-ACETYL-D-GLUCOSAMINE)
2CU-1Ligand/IonCOPPER (II) ION
3GOL2Ligand/IonGLYCEROL
4OXY1Ligand/IonOXYGEN MOLECULE
5SO42Ligand/IonSULFATE ION
Biological Unit 4 (4, 24)
No.NameCountTypeFull Name
1CBS6Ligand/IonDI(N-ACETYL-D-GLUCOSAMINE)
2CU-1Ligand/IonCOPPER (II) ION
3GOL8Ligand/IonGLYCEROL
4OXY3Ligand/IonOXYGEN MOLECULE
5SO47Ligand/IonSULFATE ION

(-) Sites  (36, 36)

Asymmetric Unit (36, 36)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:397 , CYS A:453 , ILE A:455 , HIS A:458 , PHE A:463BINDING SITE FOR RESIDUE CU A 501
02AC2SOFTWAREHIS A:67 , HIS A:110 , HIS A:454 , CU A:504 , OXY A:511 , HOH A:906BINDING SITE FOR RESIDUE CU A 502
03AC3SOFTWAREHIS A:112 , HIS A:402 , HIS A:452 , OXY A:511 , HOH A:906BINDING SITE FOR RESIDUE CU A 503
04AC4SOFTWAREHIS A:65 , HIS A:67 , HIS A:400 , HIS A:402 , CU A:502 , OXY A:511 , HOH A:906 , HOH A:1056BINDING SITE FOR RESIDUE CU A 504
05AC5SOFTWAREPRO A:133 , GLY A:258 , ASN A:259 , HOH A:603 , HOH A:751 , HOH A:778 , HOH A:839 , HOH A:941 , HOH A:998BINDING SITE FOR RESIDUE SO4 A 505
06AC6SOFTWAREARG A:263 , HOH A:708 , HOH A:715BINDING SITE FOR RESIDUE SO4 A 506
07AC7SOFTWARETHR A:365 , ALA A:366 , ALA A:367 , SER A:377 , HOH A:936BINDING SITE FOR RESIDUE SO4 A 507
08AC8SOFTWAREALA A:81 , HIS A:112 , THR A:114 , PRO A:350 , PHE A:450 , LEU A:459BINDING SITE FOR RESIDUE GOL A 508
09AC9SOFTWARETHR A:307 , ASN A:414 , ASN A:418 , HOH A:732 , HOH A:835 , HOH A:980 , HOH A:1055BINDING SITE FOR RESIDUE CBS A 509
10BC1SOFTWAREGLN A:323 , ASN A:331 , GLU A:385 , ASN A:436 , HOH A:813 , HOH A:895 , HOH A:929 , HOH A:961 , HOH A:1070BINDING SITE FOR RESIDUE CBS A 510
11BC2SOFTWAREHIS A:67 , HIS A:110 , HIS A:112 , HIS A:400 , HIS A:452 , HIS A:454 , CU A:502 , CU A:503 , CU A:504 , HOH A:667 , HOH A:906BINDING SITE FOR RESIDUE OXY A 511
12BC3SOFTWAREHIS B:397 , CYS B:453 , ILE B:455 , HIS B:458BINDING SITE FOR RESIDUE CU B 501
13BC4SOFTWAREHIS B:67 , HIS B:110 , HIS B:454 , OXY B:514 , HOH B:838BINDING SITE FOR RESIDUE CU B 502
14BC5SOFTWAREHIS B:112 , HIS B:402 , HIS B:452 , OXY B:514 , HOH B:838BINDING SITE FOR RESIDUE CU B 503
15BC6SOFTWAREHIS B:65 , HIS B:67 , HIS B:400 , HIS B:402 , OXY B:514 , HOH B:838 , HOH B:1017BINDING SITE FOR RESIDUE CU B 504
16BC7SOFTWAREVAL A:17 , VAL B:17 , HOH B:616 , HOH B:657 , HOH B:730 , HOH B:759 , HOH B:768 , HOH B:786 , HOH B:835 , VAL C:17 , HOH C:644BINDING SITE FOR RESIDUE SO4 B 505
17BC8SOFTWARETHR B:365 , ALA B:366 , ALA B:367 , SER B:377BINDING SITE FOR RESIDUE SO4 B 506
18BC9SOFTWAREPHE B:70 , GLN B:71 , LYS B:72 , ASN B:99 , PRO B:101 , MET B:103 , HOH B:644 , HOH B:684 , HOH B:962BINDING SITE FOR RESIDUE GOL B 507
19CC1SOFTWAREHIS B:180 , VAL B:181 , ASN B:182 , VAL B:183 , HOH B:945 , THR C:192 , ASP C:285 , HOH C:958BINDING SITE FOR RESIDUE GOL B 508
20CC2SOFTWAREALA B:81 , HIS B:112 , THR B:114 , PHE B:450 , HOH B:637 , HOH B:852 , HOH B:872BINDING SITE FOR RESIDUE GOL B 509
21CC3SOFTWAREASN A:182 , ASP B:174 , SER B:189 , VAL B:190 , HOH B:709 , HOH B:765 , HOH B:822 , HOH B:890BINDING SITE FOR RESIDUE GOL B 510
22CC4SOFTWAREVAL A:17 , GLY A:20 , VAL B:17 , PRO B:18 , GLY B:20 , PRO B:187 , HOH B:632 , HOH B:650 , HOH B:768 , GOL C:507BINDING SITE FOR RESIDUE GOL B 511
23CC5SOFTWARETHR B:307 , ASN B:414 , THR B:416 , HOH B:687 , HOH B:815 , HOH B:957 , HOH B:1010 , HOH B:1011 , HOH B:1027 , ARG C:314 , ASP C:420BINDING SITE FOR RESIDUE CBS B 512
24CC6SOFTWAREGLN B:323 , ASN B:331 , GLU B:385 , PRO B:389 , ASN B:436 , HOH B:615 , HOH B:795BINDING SITE FOR RESIDUE CBS B 513
25CC7SOFTWAREHIS B:110 , HIS B:112 , HIS B:400 , HIS B:402 , HIS B:452 , HIS B:454 , CU B:502 , CU B:503 , CU B:504 , HOH B:838 , HOH B:1022BINDING SITE FOR RESIDUE OXY B 514
26CC8SOFTWAREHIS C:397 , CYS C:453 , HIS C:458BINDING SITE FOR RESIDUE CU C 501
27CC9SOFTWAREHIS C:67 , HIS C:110 , HIS C:454 , CU C:504 , OXY C:511BINDING SITE FOR RESIDUE CU C 502
28DC1SOFTWAREHIS C:112 , HIS C:402 , HIS C:452 , OXY C:511BINDING SITE FOR RESIDUE CU C 503
29DC2SOFTWAREHIS C:65 , HIS C:67 , HIS C:400 , HIS C:402 , CU C:502 , OXY C:511 , HOH C:1005BINDING SITE FOR RESIDUE CU C 504
30DC3SOFTWAREALA A:14 , ASP A:15 , HOH A:810 , HOH A:1032 , ALA B:14 , ASP B:15 , HOH B:910 , ALA C:14 , ASP C:15BINDING SITE FOR RESIDUE SO4 C 505
31DC4SOFTWAREASN B:44 , ALA C:366 , ALA C:367 , SER C:377 , HOH C:1004BINDING SITE FOR RESIDUE SO4 C 506
32DC5SOFTWAREVAL A:17 , LEU A:176 , GOL B:511 , HOH B:768 , VAL C:17 , GLY C:20 , VAL C:22 , HOH C:674 , HOH C:813BINDING SITE FOR RESIDUE GOL C 507
33DC6SOFTWAREASP A:285 , HOH A:868 , HIS C:180 , VAL C:181 , ASN C:182 , VAL C:183BINDING SITE FOR RESIDUE GOL C 508
34DC7SOFTWAREASP B:420 , ASN C:414 , THR C:416 , ASN C:418 , ASP C:421 , HOH C:735 , HOH C:748 , HOH C:890 , HOH C:993 , HOH C:1024 , HOH C:1025 , HOH C:1028BINDING SITE FOR RESIDUE CBS C 509
35DC8SOFTWAREASN C:331 , GLU C:385 , ASN C:436 , HOH C:954BINDING SITE FOR RESIDUE CBS C 510
36DC9SOFTWAREHIS C:65 , HIS C:67 , HIS C:110 , HIS C:112 , HIS C:400 , HIS C:402 , HIS C:452 , HIS C:454 , CU C:502 , CU C:503 , CU C:504BINDING SITE FOR RESIDUE OXY C 511

(-) SS Bonds  (6, 6)

Asymmetric Unit
No.Residues
1A:86 -A:488
2A:118 -A:208
3B:86 -B:488
4B:118 -B:208
5C:86 -C:488
6C:118 -C:208

(-) Cis Peptide Bonds  (30, 30)

Asymmetric Unit
No.Residues
1Gly A:4 -Pro A:5
2Phe A:32 -Pro A:33
3Gly A:161 -Ala A:162
4Ala A:162 -Gly A:163
5Gly A:163 -Gly A:164
6Leu A:370 -Pro A:371
7Gly A:394 -Gly A:395
8Gly A:395 -Pro A:396
9Ile B:3 -Gly B:4
10Gly B:4 -Pro B:5
11Phe B:32 -Pro B:33
12Met B:160 -Gly B:161
13Gly B:161 -Ala B:162
14Ala B:162 -Gly B:163
15Gly B:163 -Gly B:164
16Leu B:370 -Pro B:371
17Ala B:393 -Gly B:394
18Gly B:395 -Pro B:396
19Ile C:3 -Gly C:4
20Gly C:4 -Pro C:5
21Phe C:32 -Pro C:33
22Met C:160 -Gly C:161
23Ala C:162 -Gly C:163
24Gly C:163 -Gly C:164
25Gly C:164 -Ala C:165
26Thr C:365 -Ala C:366
27Leu C:370 -Pro C:371
28Ala C:393 -Gly C:394
29Gly C:394 -Gly C:395
30Gly C:395 -Pro C:396

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3T6W)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3T6W)

(-) Exons   (0, 0)

(no "Exon" information available for 3T6W)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:495
 aligned with I1SB14_9APHY | I1SB14 from UniProtKB/TrEMBL  Length:495

    Alignment length:495
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490     
         I1SB14_9APHY     1 VQIGPVTDLHIVNADIVPDGFVRPAVNAGGTFPGPVIAGNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQKGTNWADGPAFITQCPIIVGNSFSYNFNVPGMAGTYWYHSHLTTQYCDGLRGPFVVYDPNDPDANLYDVDDDTTIITLADWYHVLAKEMGAGGAITADSTLIDGLGRTHVNVAAVPLSVITVEVGKRYRMRLVSISCDPNYDFSIDGHDMTIIETDGVDSQELTVDEIQIFAAQRYSFVLNANQPVGNYWIRANPNSGGEGFDGGINSAILRYDGATTADPVTVASTVHTKCLIETDLHPLSRNGVPGNPHQGGADCNLNLSLGFACGNFVINGVSFTPPTVPVLLQICSGANTAADLLPSGSVISLPSNSTIEIALPAGAAGGPHPFHLHGHDFAVSESASNSTSNYDDPIWRDVVSIGGVGDNVTIRFCTDNPGPWFLHCHIDWHLDAGFAIVFAEDIPNTASANPVPEAWSNLCPSYDSAH 495
               SCOP domains d3t6wa1 A:1-131 automated matches                                                                                                  d3t6wa2 A:132-304 automated matches                                                                                                                                          d3t6wa3 A:305-495 automated matches                                                                                                                                                             SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..eeeeeeeeeee......eeeeee.......eeeee...eeeeeeee...hhhhh....eeee......hhhhh..............eeeeeee.....eeeeeee...hhhhhh.eeeeeee.....hhhhh...hhh.eeeeeee...hhhhh.........eeee................eeee....eeeeeeee......eeeee....eeeeee..eeeeeeee..eee....eeeeeee......eeeeeeee......hhhhh.eeeeee....................hhhhh..................eeee..eeee..eeee..........hhhhhhhh.............eeee....eeeee..........eeee....eeeee.............ee.eee........eeeee....eeeeeee.hhhhhhh..eeeeee...hhhhhh..hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3t6w A   1 VQIGPVTDLHIVNADIVPDGFVRPAVNAGGTFPGPVIAGNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQKGTNWADGPAFITQCPIIVGNSFSYNFNVPGMAGTYWYHSHLTTQYCDGLRGPFVVYDPNDPDANLYDVDDDTTIITLADWYHVLAKEMGAGGAITADSTLIDGLGRTHVNVAAVPLSVITVEVGKRYRMRLVSISCDPNYDFSIDGHDMTIIETDGVDSQELTVDEIQIFAAQRYSFVLNANQPVGNYWIRANPNSGGEGFDGGINSAILRYDGATTADPVTVASTVHTKCLIETDLHPLSRNGVPGNPHQGGADCNLNLSLGFACGNFVINGVSFTPPTVPVLLQICSGANTAADLLPSGSVISLPSNSTIEIALPAGAAGGPHPFHLHGHDFAVSESASNSTSNYDDPIWRDVVSIGGVGDNVTIRFCTDNPGPWFLHCHIDWHLDAGFAIVFAEDIPNTASANPVPEAWSNLCPSYDSAH 495
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490     


Chain B from PDB  Type:PROTEIN  Length:495
 aligned with I1SB14_9APHY | I1SB14 from UniProtKB/TrEMBL  Length:495

    Alignment length:495
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490     
         I1SB14_9APHY     1 VQIGPVTDLHIVNADIVPDGFVRPAVNAGGTFPGPVIAGNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQKGTNWADGPAFITQCPIIVGNSFSYNFNVPGMAGTYWYHSHLTTQYCDGLRGPFVVYDPNDPDANLYDVDDDTTIITLADWYHVLAKEMGAGGAITADSTLIDGLGRTHVNVAAVPLSVITVEVGKRYRMRLVSISCDPNYDFSIDGHDMTIIETDGVDSQELTVDEIQIFAAQRYSFVLNANQPVGNYWIRANPNSGGEGFDGGINSAILRYDGATTADPVTVASTVHTKCLIETDLHPLSRNGVPGNPHQGGADCNLNLSLGFACGNFVINGVSFTPPTVPVLLQICSGANTAADLLPSGSVISLPSNSTIEIALPAGAAGGPHPFHLHGHDFAVSESASNSTSNYDDPIWRDVVSIGGVGDNVTIRFCTDNPGPWFLHCHIDWHLDAGFAIVFAEDIPNTASANPVPEAWSNLCPSYDSAH 495
               SCOP domains d3t6wb1 B:1-131 automated matches                                                                                                  d3t6wb2 B:132-304 automated matches                                                                                                                                          d3t6wb3 B:305-495 automated matches                                                                                                                                                             SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..eeeeeeeeeee......eeeeee.......eeeee...eeeeeeee...hhhhh....eeee......hhhhh..............eeeeeee.....eeeeeee...hhhhhh.eeeeeee.....hhhhh...hhh.eeeeeee...hhhhh.........eeee................eeee....eeeeeeee......eeeee....eeeeee..eeeeeeee..eee....eeeeeee......eeeeeeee......hhhhh.eeeeee....................hhhhh..................eeee..eeee..eeee..........hhhhhhhh.............eeee....eeeee..........eeee....eeeee.............ee.eee........eeeee....eeeeeee.hhhhhhh..eeeeee...hhhhhh..hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3t6w B   1 VQIGPVTDLHIVNADIVPDGFVRPAVNAGGTFPGPVIAGNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQKGTNWADGPAFITQCPIIVGNSFSYNFNVPGMAGTYWYHSHLTTQYCDGLRGPFVVYDPNDPDANLYDVDDDTTIITLADWYHVLAKEMGAGGAITADSTLIDGLGRTHVNVAAVPLSVITVEVGKRYRMRLVSISCDPNYDFSIDGHDMTIIETDGVDSQELTVDEIQIFAAQRYSFVLNANQPVGNYWIRANPNSGGEGFDGGINSAILRYDGATTADPVTVASTVHTKCLIETDLHPLSRNGVPGNPHQGGADCNLNLSLGFACGNFVINGVSFTPPTVPVLLQICSGANTAADLLPSGSVISLPSNSTIEIALPAGAAGGPHPFHLHGHDFAVSESASNSTSNYDDPIWRDVVSIGGVGDNVTIRFCTDNPGPWFLHCHIDWHLDAGFAIVFAEDIPNTASANPVPEAWSNLCPSYDSAH 495
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490     


Chain C from PDB  Type:PROTEIN  Length:495
 aligned with I1SB14_9APHY | I1SB14 from UniProtKB/TrEMBL  Length:495

    Alignment length:495
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490     
         I1SB14_9APHY     1 VQIGPVTDLHIVNADIVPDGFVRPAVNAGGTFPGPVIAGNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQKGTNWADGPAFITQCPIIVGNSFSYNFNVPGMAGTYWYHSHLTTQYCDGLRGPFVVYDPNDPDANLYDVDDDTTIITLADWYHVLAKEMGAGGAITADSTLIDGLGRTHVNVAAVPLSVITVEVGKRYRMRLVSISCDPNYDFSIDGHDMTIIETDGVDSQELTVDEIQIFAAQRYSFVLNANQPVGNYWIRANPNSGGEGFDGGINSAILRYDGATTADPVTVASTVHTKCLIETDLHPLSRNGVPGNPHQGGADCNLNLSLGFACGNFVINGVSFTPPTVPVLLQICSGANTAADLLPSGSVISLPSNSTIEIALPAGAAGGPHPFHLHGHDFAVSESASNSTSNYDDPIWRDVVSIGGVGDNVTIRFCTDNPGPWFLHCHIDWHLDAGFAIVFAEDIPNTASANPVPEAWSNLCPSYDSAH 495
               SCOP domains d3t6wc1 C:1-131 automated matches                                                                                                  d3t6wc2 C:132-304 automated matches                                                                                                                                          d3t6wc3 C:305-495 automated matches                                                                                                                                                             SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..eeeeeeeeeee......eeeeee.......eeeee...eeeeeeee...hhhhh....eeee......hhhhh..............eeeeeee.....eeeeeee..........eeeeeee.....hhhhh...hhh.eeeeeee...hhhhh.........eeee................eeee....eeeeeeee......eeeee....eeeeee..eeeeeeee..eee....eeeeeee......eeeeeeee......hhhhh.eeeeee....................hhhhh..................eeee..eeee..eeee..........hhhhhhhh.............eeee....eeeee..........eeee....eeeee.............ee.eee........eeeee....eeeeeee.hhhhhhh..eeeeee...hhhhhh..hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3t6w C   1 VQIGPVTDLHIVNADIVPDGFVRPAVNAGGTFPGPVIAGNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQKGTNWADGPAFITQCPIIVGNSFSYNFNVPGMAGTYWYHSHLTTQYCDGLRGPFVVYDPNDPDANLYDVDDDTTIITLADWYHVLAKEMGAGGAITADSTLIDGLGRTHVNVAAVPLSVITVEVGKRYRMRLVSISCDPNYDFSIDGHDMTIIETDGVDSQELTVDEIQIFAAQRYSFVLNANQPVGNYWIRANPNSGGEGFDGGINSAILRYDGATTADPVTVASTVHTKCLIETDLHPLSRNGVPGNPHQGGADCNLNLSLGFACGNFVINGVSFTPPTVPVLLQICSGANTAADLLPSGSVISLPSNSTIEIALPAGAAGGPHPFHLHGHDFAVSESASNSTSNYDDPIWRDVVSIGGVGDNVTIRFCTDNPGPWFLHCHIDWHLDAGFAIVFAEDIPNTASANPVPEAWSNLCPSYDSAH 495
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 9)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Fold: Cupredoxin-like (545)
(-)
Superfamily: Cupredoxins (543)
(-)
Family: automated matches (57)
(-)
Protein domain: automated matches (57)
(-)
Steccherinum ochraceum [TaxId: 92696] (5)
1ad3t6wa1A:1-131
1bd3t6wa2A:132-304
1cd3t6wa3A:305-495
1dd3t6wb1B:1-131
1ed3t6wb2B:132-304
1fd3t6wb3B:305-495
1gd3t6wc1C:1-131
1hd3t6wc2C:132-304
1id3t6wc3C:305-495

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3T6W)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3T6W)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (I1SB14_9APHY | I1SB14)
molecular function
    GO:0005507    copper ion binding    Interacting selectively and non-covalently with copper (Cu) ions.
    GO:0052716    hydroquinone:oxygen oxidoreductase activity    Catalysis of the reaction: 4 hydroquinone + O2 = 4 benzosemiquinone + 4 H2O.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CBS  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    CU  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    OXY  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
    DC2  [ RasMol ]  +environment [ RasMol ]
    DC3  [ RasMol ]  +environment [ RasMol ]
    DC4  [ RasMol ]  +environment [ RasMol ]
    DC5  [ RasMol ]  +environment [ RasMol ]
    DC6  [ RasMol ]  +environment [ RasMol ]
    DC7  [ RasMol ]  +environment [ RasMol ]
    DC8  [ RasMol ]  +environment [ RasMol ]
    DC9  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Ala A:162 - Gly A:163   [ RasMol ]  
    Ala B:162 - Gly B:163   [ RasMol ]  
    Ala B:393 - Gly B:394   [ RasMol ]  
    Ala C:162 - Gly C:163   [ RasMol ]  
    Ala C:393 - Gly C:394   [ RasMol ]  
    Gly A:161 - Ala A:162   [ RasMol ]  
    Gly A:163 - Gly A:164   [ RasMol ]  
    Gly A:394 - Gly A:395   [ RasMol ]  
    Gly A:395 - Pro A:396   [ RasMol ]  
    Gly A:4 - Pro A:5   [ RasMol ]  
    Gly B:161 - Ala B:162   [ RasMol ]  
    Gly B:163 - Gly B:164   [ RasMol ]  
    Gly B:395 - Pro B:396   [ RasMol ]  
    Gly B:4 - Pro B:5   [ RasMol ]  
    Gly C:163 - Gly C:164   [ RasMol ]  
    Gly C:164 - Ala C:165   [ RasMol ]  
    Gly C:394 - Gly C:395   [ RasMol ]  
    Gly C:395 - Pro C:396   [ RasMol ]  
    Gly C:4 - Pro C:5   [ RasMol ]  
    Ile B:3 - Gly B:4   [ RasMol ]  
    Ile C:3 - Gly C:4   [ RasMol ]  
    Leu A:370 - Pro A:371   [ RasMol ]  
    Leu B:370 - Pro B:371   [ RasMol ]  
    Leu C:370 - Pro C:371   [ RasMol ]  
    Met B:160 - Gly B:161   [ RasMol ]  
    Met C:160 - Gly C:161   [ RasMol ]  
    Phe A:32 - Pro A:33   [ RasMol ]  
    Phe B:32 - Pro B:33   [ RasMol ]  
    Phe C:32 - Pro C:33   [ RasMol ]  
    Thr C:365 - Ala C:366   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format | Biol. Unit 4 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3t6w
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  I1SB14_9APHY | I1SB14
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  1.10.3.2
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  I1SB14_9APHY | I1SB14
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        I1SB14_9APHY | I1SB14: 3t6v 3t6x 3t6z 3t71

(-) Related Entries Specified in the PDB File

3t6v 3t6x 3t6z 3t71