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3T6W
Biol. Unit 2
Info
Asym.Unit (266 KB)
Biol.Unit 1 (91 KB)
Biol.Unit 2 (91 KB)
Biol.Unit 3 (90 KB)
Biol.Unit 4 (257 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF STECCHERINUM OCHRACEUM LACCASE OBTAINED BY MULTI-CRYSTALS COMPOSITE DATA COLLECTION TECHNIQUE (10% DOSE)
Authors
:
M. Ferraroni, F. Briganti, I. Matera, M. Kolomytseva, L. Golovleva, A. Scozzafava, A. M. Chernykh
Date
:
29 Jul 11 (Deposition) - 18 Apr 12 (Release) - 03 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: A,B,C (1x)
Keywords
:
Beta Barrel, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Ferraroni, I. Matera, A. Chernykh, M. Kolomytseva, L. A. Golovleva A. Scozzafava, F. Briganti
Reaction Intermediates And Redox State Changes In A Blue Laccase From Steccherinum Ochraceum Observed By Crystallographic High/Low X-Ray Dose Experiments.
J. Inorg. Biochem. V. 111 203 2012
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: DI(N-ACETYL-D-GLUCOSAMINE) (CBSa)
1b: DI(N-ACETYL-D-GLUCOSAMINE) (CBSb)
1c: DI(N-ACETYL-D-GLUCOSAMINE) (CBSc)
1d: DI(N-ACETYL-D-GLUCOSAMINE) (CBSd)
1e: DI(N-ACETYL-D-GLUCOSAMINE) (CBSe)
1f: DI(N-ACETYL-D-GLUCOSAMINE) (CBSf)
2a: COPPER (II) ION (CUa)
2b: COPPER (II) ION (CUb)
2c: COPPER (II) ION (CUc)
2d: COPPER (II) ION (CUd)
2e: COPPER (II) ION (CUe)
2f: COPPER (II) ION (CUf)
2g: COPPER (II) ION (CUg)
2h: COPPER (II) ION (CUh)
2i: COPPER (II) ION (CUi)
2j: COPPER (II) ION (CUj)
2k: COPPER (II) ION (CUk)
2l: COPPER (II) ION (CUl)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
4a: OXYGEN MOLECULE (OXYa)
4b: OXYGEN MOLECULE (OXYb)
4c: OXYGEN MOLECULE (OXYc)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CBS
2
Ligand/Ion
DI(N-ACETYL-D-GLUCOSAMINE)
2
CU
-1
Ligand/Ion
COPPER (II) ION
3
GOL
5
Ligand/Ion
GLYCEROL
4
OXY
1
Ligand/Ion
OXYGEN MOLECULE
5
SO4
2
Ligand/Ion
SULFATE ION
[
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Sites
(18, 18)
Info
All Sites
01: BC3 (SOFTWARE)
02: BC4 (SOFTWARE)
03: BC5 (SOFTWARE)
04: BC6 (SOFTWARE)
05: BC7 (SOFTWARE)
06: BC8 (SOFTWARE)
07: BC9 (SOFTWARE)
08: CC1 (SOFTWARE)
09: CC2 (SOFTWARE)
10: CC3 (SOFTWARE)
11: CC4 (SOFTWARE)
12: CC5 (SOFTWARE)
13: CC6 (SOFTWARE)
14: CC7 (SOFTWARE)
15: DC3 (SOFTWARE)
16: DC4 (SOFTWARE)
17: DC5 (SOFTWARE)
18: DC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC3
SOFTWARE
HIS B:397 , CYS B:453 , ILE B:455 , HIS B:458
BINDING SITE FOR RESIDUE CU B 501
02
BC4
SOFTWARE
HIS B:67 , HIS B:110 , HIS B:454 , OXY B:514 , HOH B:838
BINDING SITE FOR RESIDUE CU B 502
03
BC5
SOFTWARE
HIS B:112 , HIS B:402 , HIS B:452 , OXY B:514 , HOH B:838
BINDING SITE FOR RESIDUE CU B 503
04
BC6
SOFTWARE
HIS B:65 , HIS B:67 , HIS B:400 , HIS B:402 , OXY B:514 , HOH B:838 , HOH B:1017
BINDING SITE FOR RESIDUE CU B 504
05
BC7
SOFTWARE
VAL A:17 , VAL B:17 , HOH B:616 , HOH B:657 , HOH B:730 , HOH B:759 , HOH B:768 , HOH B:786 , HOH B:835 , VAL C:17 , HOH C:644
BINDING SITE FOR RESIDUE SO4 B 505
06
BC8
SOFTWARE
THR B:365 , ALA B:366 , ALA B:367 , SER B:377
BINDING SITE FOR RESIDUE SO4 B 506
07
BC9
SOFTWARE
PHE B:70 , GLN B:71 , LYS B:72 , ASN B:99 , PRO B:101 , MET B:103 , HOH B:644 , HOH B:684 , HOH B:962
BINDING SITE FOR RESIDUE GOL B 507
08
CC1
SOFTWARE
HIS B:180 , VAL B:181 , ASN B:182 , VAL B:183 , HOH B:945 , THR C:192 , ASP C:285 , HOH C:958
BINDING SITE FOR RESIDUE GOL B 508
09
CC2
SOFTWARE
ALA B:81 , HIS B:112 , THR B:114 , PHE B:450 , HOH B:637 , HOH B:852 , HOH B:872
BINDING SITE FOR RESIDUE GOL B 509
10
CC3
SOFTWARE
ASN A:182 , ASP B:174 , SER B:189 , VAL B:190 , HOH B:709 , HOH B:765 , HOH B:822 , HOH B:890
BINDING SITE FOR RESIDUE GOL B 510
11
CC4
SOFTWARE
VAL A:17 , GLY A:20 , VAL B:17 , PRO B:18 , GLY B:20 , PRO B:187 , HOH B:632 , HOH B:650 , HOH B:768 , GOL C:507
BINDING SITE FOR RESIDUE GOL B 511
12
CC5
SOFTWARE
THR B:307 , ASN B:414 , THR B:416 , HOH B:687 , HOH B:815 , HOH B:957 , HOH B:1010 , HOH B:1011 , HOH B:1027 , ARG C:314 , ASP C:420
BINDING SITE FOR RESIDUE CBS B 512
13
CC6
SOFTWARE
GLN B:323 , ASN B:331 , GLU B:385 , PRO B:389 , ASN B:436 , HOH B:615 , HOH B:795
BINDING SITE FOR RESIDUE CBS B 513
14
CC7
SOFTWARE
HIS B:110 , HIS B:112 , HIS B:400 , HIS B:402 , HIS B:452 , HIS B:454 , CU B:502 , CU B:503 , CU B:504 , HOH B:838 , HOH B:1022
BINDING SITE FOR RESIDUE OXY B 514
15
DC3
SOFTWARE
ALA A:14 , ASP A:15 , HOH A:810 , HOH A:1032 , ALA B:14 , ASP B:15 , HOH B:910 , ALA C:14 , ASP C:15
BINDING SITE FOR RESIDUE SO4 C 505
16
DC4
SOFTWARE
ASN B:44 , ALA C:366 , ALA C:367 , SER C:377 , HOH C:1004
BINDING SITE FOR RESIDUE SO4 C 506
17
DC5
SOFTWARE
VAL A:17 , LEU A:176 , GOL B:511 , HOH B:768 , VAL C:17 , GLY C:20 , VAL C:22 , HOH C:674 , HOH C:813
BINDING SITE FOR RESIDUE GOL C 507
18
DC7
SOFTWARE
ASP B:420 , ASN C:414 , THR C:416 , ASN C:418 , ASP C:421 , HOH C:735 , HOH C:748 , HOH C:890 , HOH C:993 , HOH C:1024 , HOH C:1025 , HOH C:1028
BINDING SITE FOR RESIDUE CBS C 509
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 9)
Info
All SCOP Domains
1a: SCOP_d3t6wa1 (A:1-131)
1b: SCOP_d3t6wa2 (A:132-304)
1c: SCOP_d3t6wa3 (A:305-495)
1d: SCOP_d3t6wb1 (B:1-131)
1e: SCOP_d3t6wb2 (B:132-304)
1f: SCOP_d3t6wb3 (B:305-495)
1g: SCOP_d3t6wc1 (C:1-131)
1h: SCOP_d3t6wc2 (C:132-304)
1i: SCOP_d3t6wc3 (C:305-495)
View:
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Classes
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Protein Domains
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)
(
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Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
automated matches
(57)
Protein domain
:
automated matches
(57)
Steccherinum ochraceum [TaxId: 92696]
(5)
1a
d3t6wa1
A:1-131
1b
d3t6wa2
A:132-304
1c
d3t6wa3
A:305-495
1d
d3t6wb1
B:1-131
1e
d3t6wb2
B:132-304
1f
d3t6wb3
B:305-495
1g
d3t6wc1
C:1-131
1h
d3t6wc2
C:132-304
1i
d3t6wc3
C:305-495
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Chain B
Asymmetric Unit 1
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Biol.Unit 3 (90 KB)
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