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(-) Description

Title :  CRYSTAL STRUCTURE OF MOUSE RP105/MD-1 COMPLEX
 
Authors :  U. Ohto, T. Shimizu
Date :  28 Jul 11  (Deposition) - 09 Nov 11  (Release) - 09 Nov 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Protein-Protein Complex, Leucine Rich Repeat, Md-2 Related Lipid Recognition, Receptor, Innate Immunity, Glycosylation, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  U. Ohto, K. Miyake, T. Shimizu
Crystal Structures Of Mouse And Human Rp105/Md-1 Complexes Reveal Unique Dimer Organization Of The Toll-Like Receptor Family.
J. Mol. Biol. V. 413 815 2011
PubMed-ID: 21959264  |  Reference-DOI: 10.1016/J.JMB.2011.09.020

(-) Compounds

Molecule 1 - CD180 ANTIGEN
    Chains: A, B
    Engineered: YES
    Expression System: DROSOPHILA
    Expression System Cell: S2
    Expression System Taxid: 7215
    Fragment: UNP RESIDUES 21-626
    Gene: CD180, LY78, RP105
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: LYMPHOCYTE ANTIGEN 78, LY-78, RADIOPROTECTIVE 105 KDA PROTEIN
 
Molecule 2 - LYMPHOCYTE ANTIGEN 86
    Chains: C, D
    Engineered: YES
    Expression System: DROSOPHILA
    Expression System Cell: S2
    Expression System Taxid: 7215
    Gene: LY86, MD1
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: LY-86, PROTEIN MD-1

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 52)

Asymmetric/Biological Unit (5, 52)
No.NameCountTypeFull Name
1BMA2Ligand/IonBETA-D-MANNOSE
2CU1Ligand/IonCOPPER (II) ION
3GOL15Ligand/IonGLYCEROL
4MAN11Ligand/IonALPHA-D-MANNOSE
5NAG23Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (52, 52)

Asymmetric Unit (52, 52)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:269 , HIS A:295BINDING SITE FOR RESIDUE CU A 1
02AC2SOFTWARELEU A:196 , ALA A:199 , ASN A:201 , LEU A:202 , ALA A:222 , VAL A:223 , PHE A:224BINDING SITE FOR RESIDUE GOL A 3
03AC3SOFTWAREASN A:355 , LYS A:357 , HIS A:379 , ASP A:380 , ASP A:381 , HOH A:718 , HOH A:764 , MAN A:806BINDING SITE FOR RESIDUE GOL A 6
04AC4SOFTWARESER A:567 , GLN A:568 , LYS A:598 , HOH A:1099 , HOH B:969BINDING SITE FOR RESIDUE GOL A 9
05AC5SOFTWAREHIS A:529 , ASN A:530 , SER A:552 , HIS A:554 , HOH A:1124BINDING SITE FOR RESIDUE GOL A 10
06AC6SOFTWAREHIS A:454 , GLN A:477 , PHE A:505 , MAN A:810BINDING SITE FOR RESIDUE GOL A 15
07AC7SOFTWAREVAL A:33 , ASN A:34 , NAG B:700BINDING SITE FOR RESIDUE NAG A 700
08AC8SOFTWAREASN A:53 , GLU B:594 , GLN B:597BINDING SITE FOR RESIDUE NAG A 701
09AC9SOFTWAREASN A:70 , GLN A:98 , HOH A:993BINDING SITE FOR RESIDUE NAG A 702
10BC1SOFTWAREASN A:244 , THR A:246 , GLU A:273 , SER A:275 , SER A:315 , GLY A:316 , HOH A:752 , HOH A:861 , HOH A:1097BINDING SITE FOR RESIDUE NAG A 703
11BC2SOFTWAREGLU A:367 , ASN A:368 , GLU A:370 , ASN A:394 , HOH A:918 , HOH A:1047 , HOH A:1112BINDING SITE FOR RESIDUE NAG A 704
12BC3SOFTWARELYS A:353 , SER A:378 , HIS A:379 , ASN A:402 , SER A:404 , TYR A:405 , ASP A:426 , NAG A:802 , HOH A:813 , NAG A:901 , NAG A:902 , HOH A:958 , HOH A:1043BINDING SITE FOR RESIDUE NAG A 801
13BC4SOFTWAREHIS A:379 , TYR A:405 , NAG A:801 , BMA A:803 , MAN A:804 , MAN A:806 , NAG A:901 , NAG A:902 , HOH A:981 , HOH A:1184BINDING SITE FOR RESIDUE NAG A 802
14BC5SOFTWAREHOH A:772 , NAG A:802 , MAN A:804 , MAN A:808 , HOH A:1044 , HOH A:1185 , GLU C:147BINDING SITE FOR RESIDUE BMA A 803
15BC6SOFTWAREHOH A:670 , NAG A:802 , BMA A:803 , MAN A:805 , MAN A:807 , HOH A:848 , HOH A:916 , PHE C:82 , TYR C:145BINDING SITE FOR RESIDUE MAN A 804
16BC7SOFTWAREHIS A:379 , TYR A:405 , MAN A:804 , MAN A:806 , HOH A:1082 , HOH A:1119 , SER C:98BINDING SITE FOR RESIDUE MAN A 805
17BC8SOFTWAREGOL A:6 , HOH A:13 , GLY A:354 , HOH A:654 , HOH A:730 , NAG A:802 , MAN A:805 , HOH A:911 , HOH A:1022 , PRO C:100 , GLU C:103BINDING SITE FOR RESIDUE MAN A 806
18BC9SOFTWAREBMA A:803 , HOH A:809 , HOH A:1104 , ASN C:148BINDING SITE FOR RESIDUE MAN A 808
19CC1SOFTWAREHOH A:770 , HOH A:772 , MAN A:804 , MAN A:810 , ASP C:84 , SER C:98 , TYR C:145 , ARG C:149BINDING SITE FOR RESIDUE MAN A 807
20CC2SOFTWAREGOL A:15 , MAN A:807BINDING SITE FOR RESIDUE MAN A 810
21CC3SOFTWARETYR A:405 , ASP A:426 , ALA A:428 , ASN A:451 , HIS A:473 , HOH A:646 , HOH A:662 , NAG A:801 , NAG A:802 , HOH A:873 , NAG A:902 , HOH A:969BINDING SITE FOR RESIDUE NAG A 901
22CC4SOFTWARELEU A:424 , NAG A:801 , NAG A:802 , HOH A:811 , HOH A:873 , NAG A:901 , HOH A:932BINDING SITE FOR RESIDUE NAG A 902
23CC5SOFTWAREPHE A:81 , PHE A:131 , HOH A:669 , ARG C:115 , HOH C:177 , HOH C:873BINDING SITE FOR RESIDUE GOL C 4
24CC6SOFTWAREILE A:133 , ASP A:179 , GLN A:181 , GLY C:113 , ARG C:115 , HOH C:175 , HOH C:317BINDING SITE FOR RESIDUE GOL C 12
25CC7SOFTWAREGLY C:26 , TRP C:27 , PRO C:47BINDING SITE FOR RESIDUE GOL C 13
26CC8SOFTWARESER C:93 , ILE C:94 , LEU C:95 , ASN C:96BINDING SITE FOR RESIDUE NAG C 201
27CC9SOFTWARECYS C:45 , ASN C:156 , HOH C:498BINDING SITE FOR RESIDUE NAG C 202
28DC1SOFTWARESER B:509 , ARG B:531 , THR B:533 , HIS B:554 , HOH B:718 , HOH B:795BINDING SITE FOR RESIDUE GOL B 5
29DC2SOFTWAREHIS B:473 , HOH B:892 , HOH B:895BINDING SITE FOR RESIDUE GOL B 8
30DC3SOFTWARESER A:138 , HIS A:160 , HOH A:1116 , GLN B:134 , SER B:158 , HOH B:981 , HOH B:1126 , ARG D:114 , GLN D:119BINDING SITE FOR RESIDUE GOL B 11
31DC4SOFTWARENAG A:700 , ASN B:34BINDING SITE FOR RESIDUE NAG B 700
32DC5SOFTWAREGLU A:594 , GLY B:49 , ASN B:53 , ARG B:75 , HOH B:906BINDING SITE FOR RESIDUE NAG B 701
33DC6SOFTWAREASN B:70 , SER B:74 , GLN B:98 , NAG B:705 , HOH B:781 , HOH B:859 , HOH B:1001BINDING SITE FOR RESIDUE NAG B 702
34DC7SOFTWARENAG B:702BINDING SITE FOR RESIDUE NAG B 705
35DC8SOFTWARETYR A:90 , TRP A:91 , ARG B:86 , GLN B:88 , HOH B:875 , HOH B:996BINDING SITE FOR RESIDUE GOL B 2
36DC9SOFTWAREASN B:244 , SER B:245 , THR B:246 , HOH B:734 , HOH B:746BINDING SITE FOR RESIDUE NAG B 703
37EC1SOFTWAREGLU B:367 , GLU B:370 , ASN B:394BINDING SITE FOR RESIDUE NAG B 704
38EC2SOFTWARELYS B:353 , SER B:378 , HIS B:379 , ASN B:402 , SER B:404 , ASP B:426 , HOH B:676 , NAG B:802 , NAG B:901 , NAG B:902 , HOH B:910BINDING SITE FOR RESIDUE NAG B 801
39EC3SOFTWAREHIS B:379 , TYR B:405 , HOH B:667 , NAG B:801 , BMA B:803 , MAN B:804 , MAN B:806 , NAG B:901 , NAG B:902 , HOH B:923BINDING SITE FOR RESIDUE NAG B 802
40EC4SOFTWAREHOH B:731 , NAG B:802 , MAN B:804 , MAN B:807 , MAN B:808 , HOH B:921 , GLU D:147BINDING SITE FOR RESIDUE BMA B 803
41EC5SOFTWAREHOH B:771 , NAG B:802 , BMA B:803 , MAN B:805 , MAN B:807 , HOH B:918 , HOH B:927 , PHE D:82 , SER D:98 , TYR D:145BINDING SITE FOR RESIDUE MAN B 804
42EC6SOFTWAREHIS B:379 , TYR B:405 , HOH B:754 , MAN B:804 , MAN B:806 , TYR D:97 , SER D:98BINDING SITE FOR RESIDUE MAN B 805
43EC7SOFTWAREGLY B:354 , HOH B:635 , HOH B:665 , HOH B:683 , HOH B:752 , HOH B:753 , NAG B:802 , MAN B:805 , PRO D:100 , GLU D:103 , HOH D:666BINDING SITE FOR RESIDUE MAN B 806
44EC8SOFTWAREBMA B:803 , MAN B:804 , HOH B:921 , HOH B:922 , ASP D:84 , ARG D:149BINDING SITE FOR RESIDUE MAN B 807
45EC9SOFTWAREBMA B:803 , GLU D:147 , ASN D:148BINDING SITE FOR RESIDUE MAN B 808
46FC1SOFTWARETYR B:405 , ASP B:426 , ALA B:428 , ASN B:451 , HIS B:473 , HOH B:680 , NAG B:801 , NAG B:802 , HOH B:809 , HOH B:841 , HOH B:892 , NAG B:902BINDING SITE FOR RESIDUE NAG B 901
47FC2SOFTWARELEU B:424 , HOH B:677 , NAG B:801 , NAG B:802 , HOH B:809 , NAG B:901BINDING SITE FOR RESIDUE NAG B 902
48FC3SOFTWAREPHE B:81 , PHE B:131 , HOH B:630 , ARG D:115 , HOH D:226 , HOH D:497BINDING SITE FOR RESIDUE GOL D 1
49FC4SOFTWARESER A:139 , ASP B:257 , TYR D:121 , TYR D:122 , ALA D:123 , HOH D:553 , HOH D:951BINDING SITE FOR RESIDUE GOL D 7
50FC5SOFTWAREGLN A:69 , HIS A:93 , GLU A:94 , HOH A:633 , PRO D:28 , LYS D:29 , HIS D:30BINDING SITE FOR RESIDUE GOL D 14
51FC6SOFTWARESER D:93 , ASN D:96 , HOH D:419BINDING SITE FOR RESIDUE NAG D 201
52FC7SOFTWAREGLN D:43 , ASN D:156BINDING SITE FOR RESIDUE NAG D 202

(-) SS Bonds  (18, 18)

Asymmetric/Biological Unit
No.Residues
1A:28 -A:39
2A:272 -A:296
3A:337 -A:365
4A:387 -A:388
5A:581 -A:607
6A:583 -A:625
7B:28 -B:39
8B:272 -B:296
9B:337 -B:365
10B:387 -B:388
11B:581 -B:607
12B:583 -B:625
13C:33 -C:58
14C:45 -C:154
15C:102 -C:112
16D:33 -D:58
17D:45 -D:154
18D:102 -D:112

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Gln A:26 -Lys A:27
2Cys A:387 -Cys A:388
3Asn A:609 -Pro A:610
4Gln B:26 -Lys B:27
5Cys B:387 -Cys B:388
6Asn B:609 -Pro B:610

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3T6Q)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3T6Q)

(-) Exons   (0, 0)

(no "Exon" information available for 3T6Q)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:601
 aligned with CD180_MOUSE | Q62192 from UniProtKB/Swiss-Prot  Length:661

    Alignment length:601
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625 
          CD180_MOUSE    26 QKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIELGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNRISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLSCS 626
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee...eee..................eee.......ee............eee.......ee............eee.......ee............eee.......hhhhh.........eee.....................eee.......eehhhhhhh......eeee.......ee........eeeeee.....hhhhhhhhh...eeeeee............hhhhhhhhhhheeeeee.....................eee....................eee.......hhhhhhhhhh....eee......................eee.......eeee............eee......eee............eee.....ee...............eee.....................eee.....hhh.ee...hhhhhh....eee.......ee............eee......hhhhhhhhh.....eee.........hhhhhhhhhh..eee.....ee.hhhhhhhhhhhhhh...eehhhhh.eeehhhhh..hhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3t6q A  26 QKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLSCS 626
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625 


Chain B from PDB  Type:PROTEIN  Length:601
 aligned with CD180_MOUSE | Q62192 from UniProtKB/Swiss-Prot  Length:661

    Alignment length:601
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625 
          CD180_MOUSE    26 QKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIELGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNRISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLSCS 626
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee...eee..................eee.......ee............eee.......ee............eee.......ee............eee.......hhhhh.........eee.....................eee.......eehhhhhhh.......eee.......ee........eeeeee.....hhhhhhhhh...eeeeee............hhhhhhhhhhheeeeee.............hhhhh...eee....................eee.......hhhhhhhhhh....eee......................eee.......eeee............eee......eee............eee.....ee...............eee.....................eee.....hhh.ee.............eee.......ee............eee......hhhhhhhhh.....eee.........hhhhhhhhhhh.eee.....ee.hhhhhhhhhhhhhh...eehhhhh.eeehhhhh..hhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3t6q B  26 QKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLSCS 626
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625 


Chain C from PDB  Type:PROTEIN  Length:139
 aligned with LY86_MOUSE | O88188 from UniProtKB/Swiss-Prot  Length:162

    Alignment length:139
                                                                                                                                                                  162  
                                    35        45        55        65        75        85        95       105       115       125       135       145       155      |  
           LY86_MOUSE    26 GWPKHTACNSGGLEVVYQSCDPLQDFGLSIDQCSKQIQSNLNIRFGIILRQDIRKLFLDITLMAKGSSILNYSYPLCEEDQPKFSFCGRRKGEQIYYAGPVNNPGLDVPQGEYQLLLELYNENRATVACANATVTSS--   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee..eeeeeee.......eeee.....ee....eeeeeee.......eeeeeeeee..eeeeeeeeeeee..ee...........eeeeeee.....ee...eeeeeeeeee.....eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3t6q C  26 GWPKHTACNSGGLEVVYQSCDPLQDFGLSIDQCSKQIQSNLNIRFGIILRQDIRKLFLDITLMAKGSSILNYSYPLCEEDQPKFSFCGRRKGEQIYYAGPVNNPGLDVPQGEYQLLLELYNENRATVACANATVTSSEF 164
                                    35        45        55        65        75        85        95       105       115       125       135       145       155         


Chain D from PDB  Type:PROTEIN  Length:139
 aligned with LY86_MOUSE | O88188 from UniProtKB/Swiss-Prot  Length:162

    Alignment length:139
                                                                                                                                                                  162  
                                    35        45        55        65        75        85        95       105       115       125       135       145       155      |  
           LY86_MOUSE    26 GWPKHTACNSGGLEVVYQSCDPLQDFGLSIDQCSKQIQSNLNIRFGIILRQDIRKLFLDITLMAKGSSILNYSYPLCEEDQPKFSFCGRRKGEQIYYAGPVNNPGLDVPQGEYQLLLELYNENRATVACANATVTSS--   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee..eeeeeee.......eeee.....ee....eeeeeee.......eeeeeeeee..eeeeeeeeeeee..ee...........eeeeeee.....ee...eeeeeeeeee.....eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3t6q D  26 GWPKHTACNSGGLEVVYQSCDPLQDFGLSIDQCSKQIQSNLNIRFGIILRQDIRKLFLDITLMAKGSSILNYSYPLCEEDQPKFSFCGRRKGEQIYYAGPVNNPGLDVPQGEYQLLLELYNENRATVACANATVTSSEF 164
                                    35        45        55        65        75        85        95       105       115       125       135       145       155
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3T6Q)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3T6Q)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3T6Q)

(-) Gene Ontology  (14, 18)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (CD180_MOUSE | Q62192)
molecular function
    GO:0004872    receptor activity    Combining with an extracellular or intracellular messenger to initiate a change in cell activity.
biological process
    GO:0002322    B cell proliferation involved in immune response    The expansion of a B cell population by cell division following B cell activation during an immune response.
    GO:0071222    cellular response to lipopolysaccharide    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria.
    GO:0002376    immune system process    Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
    GO:0006954    inflammatory response    The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages.
    GO:0045087    innate immune response    Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
    GO:0031666    positive regulation of lipopolysaccharide-mediated signaling pathway    Any process that activates or increases the frequency, rate or extent of signaling in response to detection of lipopolysaccharide.
    GO:0002224    toll-like receptor signaling pathway    Any series of molecular signals generated as a consequence of binding to a toll-like receptor. Toll-like receptors directly bind pattern motifs from a variety of microbial sources to initiate innate immune response.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005887    integral component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain C,D   (LY86_MOUSE | O88188)
biological process
    GO:0002376    immune system process    Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
    GO:0006954    inflammatory response    The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages.
    GO:0045087    innate immune response    Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
    GO:0031666    positive regulation of lipopolysaccharide-mediated signaling pathway    Any process that activates or increases the frequency, rate or extent of signaling in response to detection of lipopolysaccharide.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

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  3t6q
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  CD180_MOUSE | Q62192
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  LY86_MOUSE | O88188
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LY86_MOUSE | O88188: 3m7o

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3T6Q)