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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF MOUSE RP105/MD-1 COMPLEX
Keywords PROTEIN-PROTEIN COMPLEX, LEUCINE RICH REPEAT, MD-2 RELATED L RECOGNITION, RECEPTOR, INNATE IMMUNITY, GLYCOSYLATION, IMMU
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3T6Q     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   CD180 ANTIGEN  A 601 4738 0
2  Protein   LYMPHOCYTE ANTIGEN 86  C 139 1091 0
3  Protein   CD180 ANTIGEN  B 601 4738 0
4  Protein   LYMPHOCYTE ANTIGEN 86  D 139 1091 0
5  Ligand    E 9 0 105
6  Ligand    F 2 0 28
7  Ligand    G 2 0 28
8  Ligand    H 8 0 94
9  Ligand    I 2 0 28
10  Ligand   CD180 ANTIGEN  A 11 0 101
11  Ligand   LYMPHOCYTE ANTIGEN 86  C 5 0 46
12  Ligand   CD180 ANTIGEN  B 8 0 80
13  Ligand   LYMPHOCYTE ANTIGEN 86  D 5 0 46
14 Water     1149 0 1149
total       2681 11658 1705
Proteins
Unit 1 GLN26 LYS27 CYS28 ILE29 GLU30 LYS31 GLU32 VAL33 ASN34 LYS35 THR36 TYR37 ASN38 CYS39 GLU40 ASN41 LEU42 GLY43 LEU44 ASN45 GLU46 ILE47 PRO48 GLY49 THR50 LEU51 PRO52 ASN53 SER54 THR55 GLU56 CYS57 LEU58 GLU59 PHE60 SER61 PHE62 ASN63 VAL64 LEU65 PRO66 THR67 ILE68 GLN69 ASN70 THR71 THR72 PHE73 SER74 ARG75 LEU76 ILE77 ASN78 LEU79 THR80 PHE81 LEU82 ASP83 LEU84 THR85 ARG86 CYS87 GLN88 ILE89 TYR90 TRP91 ILE92 HIS93 GLU94 ASP95 THR96 PHE97 GLN98 SER99 GLN100 HIS101 ARG102 LEU103 ASP104 THR105 LEU106 VAL107 LEU108 THR109 ALA110 ASN111 PRO112 LEU113 ILE114 PHE115 MET116 ALA117 GLU118 THR119 ALA120 LEU121 SER122 GLY123 PRO124 LYS125 ALA126 LEU127 LYS128 HIS129 LEU130 PHE131 PHE132 ILE133 GLN134 THR135 GLY136 ILE137 SER138 SER139 ILE140 ASP141 PHE142 ILE143 PRO144 LEU145 HIS146 ASN147 GLN148 LYS149 THR150 LEU151 GLU152 SER153 LEU154 TYR155 LEU156 GLY157 SER158 ASN159 HIS160 ILE161 SER162 SER163 ILE164 LYS165 LEU166 PRO167 LYS168 GLY169 PHE170 PRO171 THR172 GLU173 LYS174 LEU175 LYS176 VAL177 LEU178 ASP179 PHE180 GLN181 ASN182 ASN183 ALA184 ILE185 HIS186 TYR187 LEU188 SER189 LYS190 GLU191 ASP192 MET193 SER194 SER195 LEU196 GLN197 GLN198 ALA199 THR200 ASN201 LEU202 SER203 LEU204 ASN205 LEU206 ASN207 GLY208 ASN209 ASP210 ILE211 ALA212 GLY213 ILE214 GLU215 PRO216 GLY217 ALA218 PHE219 ASP220 SER221 ALA222 VAL223 PHE224 GLN225 SER226 LEU227 ASN228 PHE229 GLY230 GLY231 THR232 GLN233 ASN234 LEU235 LEU236 VAL237 ILE238 PHE239 LYS240 GLY241 LEU242 LYS243 ASN244 SER245 THR246 ILE247 GLN248 SER249 LEU250 TRP251 LEU252 GLY253 THR254 PHE255 GLU256 ASP257 MET258 ASP259 ASP260 GLU261 ASP262 ILE263 SER264 PRO265 ALA266 VAL267 PHE268 GLU269 GLY270 LEU271 CYS272 GLU273 MET274 SER275 VAL276 GLU277 SER278 ILE279 ASN280 LEU281 GLN282 LYS283 HIS284 TYR285 PHE286 PHE287 ASN288 ILE289 SER290 SER291 ASN292 THR293 PHE294 HIS295 CYS296 PHE297 SER298 GLY299 LEU300 GLN301 GLU302 LEU303 ASP304 LEU305 THR306 ALA307 THR308 HIS309 LEU310 SER311 GLU312 LEU313 PRO314 SER315 GLY316 LEU317 VAL318 GLY319 LEU320 SER321 THR322 LEU323 LYS324 LYS325 LEU326 VAL327 LEU328 SER329 ALA330 ASN331 LYS332 PHE333 GLU334 ASN335 LEU336 CYS337 GLN338 ILE339 SER340 ALA341 SER342 ASN343 PHE344 PRO345 SER346 LEU347 THR348 HIS349 LEU350 SER351 ILE352 LYS353 GLY354 ASN355 THR356 LYS357 ARG358 LEU359 GLU360 LEU361 GLY362 THR363 GLY364 CYS365 LEU366 GLU367 ASN368 LEU369 GLU370 ASN371 LEU372 ARG373 GLU374 LEU375 ASP376 LEU377 SER378 HIS379 ASP380 ASP381 ILE382 GLU383 THR384 SER385 ASP386 CYS387 CYS388 ASN389 LEU390 GLN391 LEU392 ARG393 ASN394 LEU395 SER396 HIS397 LEU398 GLN399 SER400 LEU401 ASN402 LEU403 SER404 TYR405 ASN406 GLU407 PRO408 LEU409 SER410 LEU411 LYS412 THR413 GLU414 ALA415 PHE416 LYS417 GLU418 CYS419 PRO420 GLN421 LEU422 GLU423 LEU424 LEU425 ASP426 LEU427 ALA428 PHE429 THR430 ARG431 LEU432 LYS433 VAL434 LYS435 ASP436 ALA437 GLN438 SER439 PRO440 PHE441 GLN442 ASN443 LEU444 HIS445 LEU446 LEU447 LYS448 VAL449 LEU450 ASN451 LEU452 SER453 HIS454 SER455 LEU456 LEU457 ASP458 ILE459 SER460 SER461 GLU462 GLN463 LEU464 PHE465 ASP466 GLY467 LEU468 PRO469 ALA470 LEU471 GLN472 HIS473 LEU474 ASN475 LEU476 GLN477 GLY478 ASN479 HIS480 PHE481 PRO482 LYS483 GLY484 ASN485 ILE486 GLN487 LYS488 THR489 ASN490 SER491 LEU492 GLN493 THR494 LEU495 GLY496 ARG497 LEU498 GLU499 ILE500 LEU501 VAL502 LEU503 SER504 PHE505 CYS506 ASP507 LEU508 SER509 SER510 ILE511 ASP512 GLN513 HIS514 ALA515 PHE516 THR517 SER518 LEU519 LYS520 MET521 MET522 ASN523 HIS524 VAL525 ASP526 LEU527 SER528 HIS529 ASN530 ARG531 LEU532 THR533 SER534 SER535 SER536 ILE537 GLU538 ALA539 LEU540 SER541 HIS542 LEU543 LYS544 GLY545 ILE546 TYR547 LEU548 ASN549 LEU550 ALA551 SER552 ASN553 HIS554 ILE555 SER556 ILE557 ILE558 LEU559 PRO560 SER561 LEU562 LEU563 PRO564 ILE565 LEU566 SER567 GLN568 GLN569 ARG570 THR571 ILE572 ASN573 LEU574 ARG575 GLN576 ASN577 PRO578 LEU579 ASP580 CYS581 THR582 CYS583 SER584 ASN585 ILE586 TYR587 PHE588 LEU589 GLU590 TRP591 TYR592 LYS593 GLU594 ASN595 MET596 GLN597 LYS598 LEU599 GLU600 ASP601 THR602 GLU603 ASP604 THR605 LEU606 CYS607 GLU608 ASN609 PRO610 PRO611 LEU612 LEU613 ARG614 GLY615 VAL616 ARG617 LEU618 SER619 ASP620 VAL621 THR622 LEU623 SER624 CYS625 SER626
Unit 2 GLY26 TRP27 PRO28 LYS29 HIS30 THR31 ALA32 CYS33 ASN34 SER35 GLY36 GLY37 LEU38 GLU39 VAL40 VAL41 TYR42 GLN43 SER44 CYS45 ASP46 PRO47 LEU48 GLN49 ASP50 PHE51 GLY52 LEU53 SER54 ILE55 ASP56 GLN57 CYS58 SER59 LYS60 GLN61 ILE62 GLN63 SER64 ASN65 LEU66 ASN67 ILE68 ARG69 PHE70 GLY71 ILE72 ILE73 LEU74 ARG75 GLN76 ASP77 ILE78 ARG79 LYS80 LEU81 PHE82 LEU83 ASP84 ILE85 THR86 LEU87 MET88 ALA89 LYS90 GLY91 SER92 SER93 ILE94 LEU95 ASN96 TYR97 SER98 TYR99 PRO100 LEU101 CYS102 GLU103 GLU104 ASP105 GLN106 PRO107 LYS108 PHE109 SER110 PHE111 CYS112 GLY113 ARG114 ARG115 LYS116 GLY117 GLU118 GLN119 ILE120 TYR121 TYR122 ALA123 GLY124 PRO125 VAL126 ASN127 ASN128 PRO129 GLY130 LEU131 ASP132 VAL133 PRO134 GLN135 GLY136 GLU137 TYR138 GLN139 LEU140 LEU141 LEU142 GLU143 LEU144 TYR145 ASN146 GLU147 ASN148 ARG149 ALA150 THR151 VAL152 ALA153 CYS154 ALA155 ASN156 ALA157 THR158 VAL159 THR160 SER161 SER162 GLU163 PHE164
Unit 3 GLN26 LYS27 CYS28 ILE29 GLU30 LYS31 GLU32 VAL33 ASN34 LYS35 THR36 TYR37 ASN38 CYS39 GLU40 ASN41 LEU42 GLY43 LEU44 ASN45 GLU46 ILE47 PRO48 GLY49 THR50 LEU51 PRO52 ASN53 SER54 THR55 GLU56 CYS57 LEU58 GLU59 PHE60 SER61 PHE62 ASN63 VAL64 LEU65 PRO66 THR67 ILE68 GLN69 ASN70 THR71 THR72 PHE73 SER74 ARG75 LEU76 ILE77 ASN78 LEU79 THR80 PHE81 LEU82 ASP83 LEU84 THR85 ARG86 CYS87 GLN88 ILE89 TYR90 TRP91 ILE92 HIS93 GLU94 ASP95 THR96 PHE97 GLN98 SER99 GLN100 HIS101 ARG102 LEU103 ASP104 THR105 LEU106 VAL107 LEU108 THR109 ALA110 ASN111 PRO112 LEU113 ILE114 PHE115 MET116 ALA117 GLU118 THR119 ALA120 LEU121 SER122 GLY123 PRO124 LYS125 ALA126 LEU127 LYS128 HIS129 LEU130 PHE131 PHE132 ILE133 GLN134 THR135 GLY136 ILE137 SER138 SER139 ILE140 ASP141 PHE142 ILE143 PRO144 LEU145 HIS146 ASN147 GLN148 LYS149 THR150 LEU151 GLU152 SER153 LEU154 TYR155 LEU156 GLY157 SER158 ASN159 HIS160 ILE161 SER162 SER163 ILE164 LYS165 LEU166 PRO167 LYS168 GLY169 PHE170 PRO171 THR172 GLU173 LYS174 LEU175 LYS176 VAL177 LEU178 ASP179 PHE180 GLN181 ASN182 ASN183 ALA184 ILE185 HIS186 TYR187 LEU188 SER189 LYS190 GLU191 ASP192 MET193 SER194 SER195 LEU196 GLN197 GLN198 ALA199 THR200 ASN201 LEU202 SER203 LEU204 ASN205 LEU206 ASN207 GLY208 ASN209 ASP210 ILE211 ALA212 GLY213 ILE214 GLU215 PRO216 GLY217 ALA218 PHE219 ASP220 SER221 ALA222 VAL223 PHE224 GLN225 SER226 LEU227 ASN228 PHE229 GLY230 GLY231 THR232 GLN233 ASN234 LEU235 LEU236 VAL237 ILE238 PHE239 LYS240 GLY241 LEU242 LYS243 ASN244 SER245 THR246 ILE247 GLN248 SER249 LEU250 TRP251 LEU252 GLY253 THR254 PHE255 GLU256 ASP257 MET258 ASP259 ASP260 GLU261 ASP262 ILE263 SER264 PRO265 ALA266 VAL267 PHE268 GLU269 GLY270 LEU271 CYS272 GLU273 MET274 SER275 VAL276 GLU277 SER278 ILE279 ASN280 LEU281 GLN282 LYS283 HIS284 TYR285 PHE286 PHE287 ASN288 ILE289 SER290 SER291 ASN292 THR293 PHE294 HIS295 CYS296 PHE297 SER298 GLY299 LEU300 GLN301 GLU302 LEU303 ASP304 LEU305 THR306 ALA307 THR308 HIS309 LEU310 SER311 GLU312 LEU313 PRO314 SER315 GLY316 LEU317 VAL318 GLY319 LEU320 SER321 THR322 LEU323 LYS324 LYS325 LEU326 VAL327 LEU328 SER329 ALA330 ASN331 LYS332 PHE333 GLU334 ASN335 LEU336 CYS337 GLN338 ILE339 SER340 ALA341 SER342 ASN343 PHE344 PRO345 SER346 LEU347 THR348 HIS349 LEU350 SER351 ILE352 LYS353 GLY354 ASN355 THR356 LYS357 ARG358 LEU359 GLU360 LEU361 GLY362 THR363 GLY364 CYS365 LEU366 GLU367 ASN368 LEU369 GLU370 ASN371 LEU372 ARG373 GLU374 LEU375 ASP376 LEU377 SER378 HIS379 ASP380 ASP381 ILE382 GLU383 THR384 SER385 ASP386 CYS387 CYS388 ASN389 LEU390 GLN391 LEU392 ARG393 ASN394 LEU395 SER396 HIS397 LEU398 GLN399 SER400 LEU401 ASN402 LEU403 SER404 TYR405 ASN406 GLU407 PRO408 LEU409 SER410 LEU411 LYS412 THR413 GLU414 ALA415 PHE416 LYS417 GLU418 CYS419 PRO420 GLN421 LEU422 GLU423 LEU424 LEU425 ASP426 LEU427 ALA428 PHE429 THR430 ARG431 LEU432 LYS433 VAL434 LYS435 ASP436 ALA437 GLN438 SER439 PRO440 PHE441 GLN442 ASN443 LEU444 HIS445 LEU446 LEU447 LYS448 VAL449 LEU450 ASN451 LEU452 SER453 HIS454 SER455 LEU456 LEU457 ASP458 ILE459 SER460 SER461 GLU462 GLN463 LEU464 PHE465 ASP466 GLY467 LEU468 PRO469 ALA470 LEU471 GLN472 HIS473 LEU474 ASN475 LEU476 GLN477 GLY478 ASN479 HIS480 PHE481 PRO482 LYS483 GLY484 ASN485 ILE486 GLN487 LYS488 THR489 ASN490 SER491 LEU492 GLN493 THR494 LEU495 GLY496 ARG497 LEU498 GLU499 ILE500 LEU501 VAL502 LEU503 SER504 PHE505 CYS506 ASP507 LEU508 SER509 SER510 ILE511 ASP512 GLN513 HIS514 ALA515 PHE516 THR517 SER518 LEU519 LYS520 MET521 MET522 ASN523 HIS524 VAL525 ASP526 LEU527 SER528 HIS529 ASN530 ARG531 LEU532 THR533 SER534 SER535 SER536 ILE537 GLU538 ALA539 LEU540 SER541 HIS542 LEU543 LYS544 GLY545 ILE546 TYR547 LEU548 ASN549 LEU550 ALA551 SER552 ASN553 HIS554 ILE555 SER556 ILE557 ILE558 LEU559 PRO560 SER561 LEU562 LEU563 PRO564 ILE565 LEU566 SER567 GLN568 GLN569 ARG570 THR571 ILE572 ASN573 LEU574 ARG575 GLN576 ASN577 PRO578 LEU579 ASP580 CYS581 THR582 CYS583 SER584 ASN585 ILE586 TYR587 PHE588 LEU589 GLU590 TRP591 TYR592 LYS593 GLU594 ASN595 MET596 GLN597 LYS598 LEU599 GLU600 ASP601 THR602 GLU603 ASP604 THR605 LEU606 CYS607 GLU608 ASN609 PRO610 PRO611 LEU612 LEU613 ARG614 GLY615 VAL616 ARG617 LEU618 SER619 ASP620 VAL621 THR622 LEU623 SER624 CYS625 SER626
Unit 4 GLY26 TRP27 PRO28 LYS29 HIS30 THR31 ALA32 CYS33 ASN34 SER35 GLY36 GLY37 LEU38 GLU39 VAL40 VAL41 TYR42 GLN43 SER44 CYS45 ASP46 PRO47 LEU48 GLN49 ASP50 PHE51 GLY52 LEU53 SER54 ILE55 ASP56 GLN57 CYS58 SER59 LYS60 GLN61 ILE62 GLN63 SER64 ASN65 LEU66 ASN67 ILE68 ARG69 PHE70 GLY71 ILE72 ILE73 LEU74 ARG75 GLN76 ASP77 ILE78 ARG79 LYS80 LEU81 PHE82 LEU83 ASP84 ILE85 THR86 LEU87 MET88 ALA89 LYS90 GLY91 SER92 SER93 ILE94 LEU95 ASN96 TYR97 SER98 TYR99 PRO100 LEU101 CYS102 GLU103 GLU104 ASP105 GLN106 PRO107 LYS108 PHE109 SER110 PHE111 CYS112 GLY113 ARG114 ARG115 LYS116 GLY117 GLU118 GLN119 ILE120 TYR121 TYR122 ALA123 GLY124 PRO125 VAL126 ASN127 ASN128 PRO129 GLY130 LEU131 ASP132 VAL133 PRO134 GLN135 GLY136 GLU137 TYR138 GLN139 LEU140 LEU141 LEU142 GLU143 LEU144 TYR145 ASN146 GLU147 ASN148 ARG149 ALA150 THR151 VAL152 ALA153 CYS154 ALA155 ASN156 ALA157 THR158 VAL159 THR160 SER161 SER162 GLU163 PHE164
Ligands
Unit 5 NAG1 NAG2 BMA3 MAN4 MAN5 MAN6 MAN7 MAN8 MAN9
Unit 6 NAG1 NAG2
Unit 7 NAG1 NAG2
Unit 8 NAG1 NAG2 BMA3 MAN4 MAN5 MAN6 MAN7 MAN8
Unit 9 NAG1 NAG2
Unit 10 CU1 GOL3 GOL6 GOL9 GOL10 GOL15 NAG700 NAG701 NAG702 NAG703 NAG704
Unit 11 GOL4 GOL12 GOL13 NAG201 NAG202
Unit 12 GOL2 GOL5 GOL8 GOL11 NAG700 NAG701 NAG703 NAG704
Unit 13 GOL1 GOL7 GOL14 NAG201 NAG202
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany