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(-) Description

Title :  FRANCISELLA TULARENSIS PILIN PILE
 
Authors :  T. Wood, A. S. Arvai, D. S. Shin, S. Hartung, S. Kolappan, L. Craig, J. A. T
Date :  30 Jun 11  (Deposition) - 02 Nov 11  (Release) - 14 May 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Pilus Subunit, Extracellular, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Hartung, A. S. Arvai, T. Wood, S. Kolappan, D. S. Shin, L. Craig, J. A. Tainer
Ultrahigh Resolution And Full-Length Pilin Structures With Insights For Filament Assembly, Pathogenic Functions, And Vaccine Potential.
J. Biol. Chem. V. 286 44254 2011
PubMed-ID: 22027840  |  Reference-DOI: 10.1074/JBC.M111.297242

(-) Compounds

Molecule 1 - PILE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28B
    Expression System Strain: ESCHERICHIA COLI ORIGAMI2 (DE3)
    Expression System Taxid: 83333
    Gene: FTT0889C, FTT_0889C, PILE2
    Organism Scientific: FRANCISELLA TULARENSIS SUBSP. TULARENSIS
    Organism Taxid: 177416
    Strain: SCHU S4
    Synonym: TYPE IV PILI FIBER BUILDING BLOCK PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1SO4-1Ligand/IonSULFATE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:2 , HOH A:3 , HOH A:4 , HOH A:5 , SER A:106 , GLY A:107 , ARG B:30 , ILE B:34 , SER B:106BINDING SITE FOR RESIDUE SO4 A 1

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:114 -A:132
2B:114 -B:132

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3SOJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3SOJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3SOJ)

(-) Exons   (0, 0)

(no "Exon" information available for 3SOJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:114
 aligned with Q5NGF6_FRATT | Q5NGF6 from UniProtKB/TrEMBL  Length:146

    Alignment length:114
                                    42        52        62        72        82        92       102       112       122       132       142    
         Q5NGF6_FRATT    33 SSYKERAAIIESMNIIGNVKASIQNDINNNLDISQQTYDTPTGVTVTGSTSGATIDINLSQTSPQHFTNDNDIIRLSGVVVSGSTFQWTCSHNVNASTLTASNVPHTCSSTFSA 146
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhh.eeeee..eeeeee..eeeeeeehhhhh.........eeeeeeeee..eeeeeeeeee...........hhhhheee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 3soj A  25 SHMKERAAIIESMNIIGNVKASIQNDINNNLDISQQTYDTPTGVTVTGSTSGATIDINLSQTSPQHFTNDNDIIRLSGVVVSGSTFQWTCSHNVNASTLTASNVPHTCSSTFSA 138
                                    34        44        54        64        74        84        94       104       114       124       134    


Chain B from PDB  Type:PROTEIN  Length:115
 aligned with Q5NGF6_FRATT | Q5NGF6 from UniProtKB/TrEMBL  Length:146

    Alignment length:115
                                    41        51        61        71        81        91       101       111       121       131       141     
         Q5NGF6_FRATT    32 YSSYKERAAIIESMNIIGNVKASIQNDINNNLDISQQTYDTPTGVTVTGSTSGATIDINLSQTSPQHFTNDNDIIRLSGVVVSGSTFQWTCSHNVNASTLTASNVPHTCSSTFSA 146
               SCOP domains ------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhh.eeeee..eeeeee..eeeeeeehhhhh.........eeeeeeeeehhheeeeeeeee...........hhhhheee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 3soj B  24 ASHMKERAAIIESMNIIGNVKASIQNDINNNLDISQQTYDTPTGVTVTGSTSGATIDINLSQTSPQHFTNDNDIIRLSGVVVSGSTFQWTCSHNVNASTLTASNVPHTCSSTFSA 138
                                    33        43        53        63        73        83        93       103       113       123       133
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3SOJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3SOJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3SOJ)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q5NGF6_FRATT | Q5NGF6)
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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3sok