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(-) Description

Title :  2.65 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF DTDP-4-DEHYDRORHAMNOSE REDUCTASE (RFBD) FROM BACILLUS ANTHRACIS STR. AMES IN COMPLEX WITH NADP
 
Authors :  A. S. Halavaty, M. Kuhn, L. Shuvalova, G. Minasov, S. Peterson, W. F. And Center For Structural Genomics Of Infectious Diseases (Csgi
Date :  07 Jun 11  (Deposition) - 22 Jun 11  (Release) - 22 Jun 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.65
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Keywords :  Dtdp-4-Dehydrorhamnose Reductase, Rfbd, Structural Genomics, Infectious Diseases, Bacillus Anthracis Str. Ames, Rhamnose Biosynthetic Pathway, Center For Structural Genomics Of Infectious Diseases, Csgid, Rossmann Fold, Catalyzes Formation Of Dtdp-4- Dehydro-6-Deoxy-L-Mannose, Nadph And H+ From Dtdp-6-Deoxy-L-Mannose And Nadp+, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. S. Halavaty, M. Kuhn, L. Shuvalova, G. Minasov, S. Peterson, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
2. 65 Angstrom Resolution Crystal Structure Of Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus Anthracis Str. Ames In Complex With Nadp
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - DTDP-4-DEHYDRORHAMNOSE REDUCTASE
    Chains: A, B, C, D, E, F
    EC Number: 1.1.1.133
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21/MAGIC
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: BAS1138, BA_1231, GBAA_1231, RFBD
    Organism Common: ANTHRAX, ANTHRAX BACTERIUM
    Organism Scientific: BACILLUS ANTHRACIS
    Organism Taxid: 198094
    Strain: AMES

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A     
Biological Unit 2 (1x):  B    
Biological Unit 3 (1x):   C   
Biological Unit 4 (1x):    D  
Biological Unit 5 (1x):     E 
Biological Unit 6 (1x):      F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 23)

Asymmetric Unit (2, 23)
No.NameCountTypeFull Name
1NAP6Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2SO417Ligand/IonSULFATE ION
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
1NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2SO42Ligand/IonSULFATE ION
Biological Unit 2 (2, 5)
No.NameCountTypeFull Name
1NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2SO44Ligand/IonSULFATE ION
Biological Unit 3 (2, 3)
No.NameCountTypeFull Name
1NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2SO42Ligand/IonSULFATE ION
Biological Unit 4 (2, 3)
No.NameCountTypeFull Name
1NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2SO42Ligand/IonSULFATE ION
Biological Unit 5 (2, 5)
No.NameCountTypeFull Name
1NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2SO44Ligand/IonSULFATE ION
Biological Unit 6 (2, 4)
No.NameCountTypeFull Name
1NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2SO43Ligand/IonSULFATE ION

(-) Sites  (23, 23)

Asymmetric Unit (23, 23)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:12 , GLN A:13 , LEU A:14 , LYS A:34 , LEU A:37 , ASP A:38 , ILE A:39 , CYS A:60 , ALA A:61 , ALA A:62 , THR A:64 , ILE A:79 , ILE A:101 , SER A:102 , THR A:103 , TYR A:127 , LYS A:131 , THR A:150 , LEU A:153 , HOH A:296BINDING SITE FOR RESIDUE NAP A 285
02AC2SOFTWARELYS A:156 , TYR A:157 , GLY A:158BINDING SITE FOR RESIDUE SO4 A 286
03AC3SOFTWAREARG A:111 , HIS A:119BINDING SITE FOR RESIDUE SO4 A 287
04AC4SOFTWAREGLY B:9 , GLY B:12 , GLN B:13 , LEU B:14 , LYS B:34 , LEU B:37 , ASP B:38 , ILE B:39 , THR B:40 , CYS B:60 , ALA B:61 , ALA B:62 , THR B:64 , ILE B:101 , SER B:102 , THR B:103 , TYR B:127 , LYS B:131 , THR B:150 , TRP B:152 , LEU B:153 , HOH B:291 , HOH B:293 , HOH B:304 , HOH B:324 , HOH B:336BINDING SITE FOR RESIDUE NAP B 285
05AC5SOFTWARETHR B:64 , LYS B:65 , VAL B:66 , ASP B:67 , ARG B:248 , HOH B:339BINDING SITE FOR RESIDUE SO4 B 286
06AC6SOFTWARETYR B:157 , GLY B:158 , LYS B:163BINDING SITE FOR RESIDUE SO4 B 287
07AC7SOFTWARELYS B:170 , ARG B:172 , MET B:230BINDING SITE FOR RESIDUE SO4 B 288
08AC8SOFTWAREARG B:111 , HIS B:119BINDING SITE FOR RESIDUE SO4 B 289
09AC9SOFTWAREASN C:11 , GLY C:12 , GLN C:13 , LEU C:14 , LYS C:34 , LEU C:37 , ASP C:38 , ILE C:39 , THR C:40 , CYS C:60 , ALA C:61 , ALA C:62 , THR C:64 , ILE C:101 , SER C:102 , TYR C:127 , LYS C:131 , LEU C:153 , HOH C:292 , HOH C:305 , HOH C:311BINDING SITE FOR RESIDUE NAP C 285
10BC1SOFTWAREVAL C:66 , TYR C:105 , ARG C:248BINDING SITE FOR RESIDUE SO4 C 286
11BC2SOFTWARELYS C:16 , TYR C:157 , GLY C:158 , LYS C:163BINDING SITE FOR RESIDUE SO4 C 287
12BC3SOFTWAREASN D:11 , GLY D:12 , GLN D:13 , LEU D:14 , LYS D:34 , LEU D:37 , ASP D:38 , ILE D:39 , CYS D:60 , ALA D:61 , ALA D:62 , THR D:64 , ILE D:79 , ILE D:101 , SER D:102 , THR D:103 , TYR D:127 , LYS D:131 , HOH D:288 , HOH D:301BINDING SITE FOR RESIDUE NAP D 285
13BC4SOFTWARETYR D:157 , GLY D:158 , LYS D:163BINDING SITE FOR RESIDUE SO4 D 286
14BC5SOFTWAREVAL D:66 , ASP D:67 , ARG D:248BINDING SITE FOR RESIDUE SO4 D 287
15BC6SOFTWAREASN E:11 , GLY E:12 , GLN E:13 , LEU E:14 , LYS E:34 , LEU E:37 , ASP E:38 , ILE E:39 , CYS E:60 , ALA E:61 , ALA E:62 , THR E:64 , ILE E:79 , ILE E:101 , SER E:102 , THR E:103 , TYR E:127 , LYS E:131 , LEU E:153 , HOH E:290 , HOH E:319BINDING SITE FOR RESIDUE NAP E 285
16BC7SOFTWARELYS E:16 , TYR E:157 , GLY E:158 , LYS E:163BINDING SITE FOR RESIDUE SO4 E 286
17BC8SOFTWAREARG E:111 , HIS E:119BINDING SITE FOR RESIDUE SO4 E 287
18BC9SOFTWAREARG E:172BINDING SITE FOR RESIDUE SO4 E 288
19CC1SOFTWARETHR E:64 , LYS E:65 , VAL E:66 , ASP E:67 , ARG E:248BINDING SITE FOR RESIDUE SO4 E 289
20CC2SOFTWAREGLY F:12 , GLN F:13 , LEU F:14 , LYS F:34 , LEU F:37 , ASP F:38 , ILE F:39 , CYS F:60 , ALA F:61 , ALA F:62 , THR F:64 , ILE F:101 , SER F:102 , THR F:103 , TYR F:127 , LYS F:131 , LEU F:153 , HOH F:289 , HOH F:317 , HOH F:322 , HOH F:332BINDING SITE FOR RESIDUE NAP F 285
21CC3SOFTWAREARG F:4 , ARG F:53 , HIS F:55BINDING SITE FOR RESIDUE SO4 F 286
22CC4SOFTWARETYR F:157 , GLY F:158 , LYS F:163BINDING SITE FOR RESIDUE SO4 F 287
23CC5SOFTWAREARG F:111 , HIS F:119BINDING SITE FOR RESIDUE SO4 F 288

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3SC6)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3SC6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3SC6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3SC6)

(-) Exons   (0, 0)

(no "Exon" information available for 3SC6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:281
 aligned with Q81TN9_BACAN | Q81TN9 from UniProtKB/TrEMBL  Length:284

    Alignment length:281
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281 
         Q81TN9_BACAN     2 KERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQEIRPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGAKLVYISTDYVFQGDRPEGYDEFHNPAPINIYGASKYAGEQFVKELHNKYFIVRTSWLYGKYGNNFVKTMIRLGKEREEISVVADQIGSPTYVADLNVMINKLIHTSLYGTYHVSNTGSCSWFEFAKKIFSYANMKVNVLPVSTEEFGAAAARPKYSIFQHNMLRLNGFLQMPSWEEGLERFFIETK 282
               SCOP domains d3sc6a_ A: automated matches                                                                                                                                                                                                                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee...hhhhhhhhhhh....eeeeee........hhhhhhhhhhhhh..eeee.....hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.hhh.................hhhhhhhhhhhhhhhhhh..eeeeee..ee.....hhhhhhhhhhh...eeeee...ee..eehhhhhhhhhhhhh....eeee......eehhhhhhhhhhhhh...eeeeehhhhhh............hhhhhhh......hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sc6 A   2 KERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQEIRPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGAKLVYISTDYVFQGDRPEGYDEFHNPAPINIYGASKYAGEQFVKELHNKYFIVRTSWLYGKYGNNFVKTMIRLGKEREEISVVADQIGSPTYVADLNVMINKLIHTSLYGTYHVSNTGSCSWFEFAKKIFSYANMKVNVLPVSTEEFGAAAARPKYSIFQHNMLRLNGFLQMPSWEEGLERFFIETK 282
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281 


Chain B from PDB  Type:PROTEIN  Length:280
 aligned with Q81TN9_BACAN | Q81TN9 from UniProtKB/TrEMBL  Length:284

    Alignment length:284
                               1                                                                                                                                                                                                                                                                                        
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277    
         Q81TN9_BACAN     - ---MKERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQEIRPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGAKLVYISTDYVFQGDRPEGYDEFHNPAPINIYGASKYAGEQFVKELHNKYFIVRTSWLYGKYGNNFVKTMIRLGKEREEISVVADQIGSPTYVADLNVMINKLIHTSLYGTYHVSNTGSCSWFEFAKKIFSYANMKVNVLPVSTEEFGAAAARPKYSIFQHNMLRLNGFLQMPSWEEGLERFFIET 281
               SCOP domains d3sc6b_ B: automated matches                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee...hhhhhhhhhhh....eeeee.........hhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.hhh.................hhhhhhhhhhhhhhhhhh..eeeeee..ee.....hhhhhhhhhhhhh..eeee...ee..eehhhhhhhhhhhhh....eeee......eehhhhhhhhhhhh.....eeee..----.......ee...hhhhhhh......hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sc6 B  -2 SNAMKERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQEIRPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGAKLVYISTDYVFQGDRPEGYDEFHNPAPINIYGASKYAGEQFVKELHNKYFIVRTSWLYGKYGNNFVKTMIRLGKEREEISVVADQIGSPTYVADLNVMINKLIHTSLYGTYHVSNTGSCSWFEFAKKIFSYANMKVNVLPVST----AAAARPKYSIFQHNMLRLNGFLQMPSWEEGLERFFIET 281
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237 |    |247       257       267       277    
                                                                                                                                                                                                                                                                           239  244                                     


Chain C from PDB  Type:PROTEIN  Length:281
 aligned with Q81TN9_BACAN | Q81TN9 from UniProtKB/TrEMBL  Length:284

    Alignment length:281
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280 
         Q81TN9_BACAN     1 MKERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQEIRPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGAKLVYISTDYVFQGDRPEGYDEFHNPAPINIYGASKYAGEQFVKELHNKYFIVRTSWLYGKYGNNFVKTMIRLGKEREEISVVADQIGSPTYVADLNVMINKLIHTSLYGTYHVSNTGSCSWFEFAKKIFSYANMKVNVLPVSTEEFGAAAARPKYSIFQHNMLRLNGFLQMPSWEEGLERFFIET 281
               SCOP domains d3sc6c_ C: automated matches                                                                                                                                                                                                                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee...hhhhhhhhhhh....eeeee.........hhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.hhh.................hhhhhhhhhhhhhhhhhh..eeeeee..ee.....hhhhhhhhhhh...eeeee...ee..eehhhhhhhhhhhhh....eeee......eehhhhhhhhhhhhh...eeeeehhhhhh.......ee...hhhhhhh......hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sc6 C   1 MKERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQEIRPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGAKLVYISTDYVFQGDRPEGYDEFHNPAPINIYGASKYAGEQFVKELHNKYFIVRTSWLYGKYGNNFVKTMIRLGKEREEISVVADQIGSPTYVADLNVMINKLIHTSLYGTYHVSNTGSCSWFEFAKKIFSYANMKVNVLPVSTEEFGAAAARPKYSIFQHNMLRLNGFLQMPSWEEGLERFFIET 281
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280 


Chain D from PDB  Type:PROTEIN  Length:283
 aligned with Q81TN9_BACAN | Q81TN9 from UniProtKB/TrEMBL  Length:284

    Alignment length:283
                              1                                                                                                                                                                                                                                                                                        
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278   
         Q81TN9_BACAN     - --MKERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQEIRPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGAKLVYISTDYVFQGDRPEGYDEFHNPAPINIYGASKYAGEQFVKELHNKYFIVRTSWLYGKYGNNFVKTMIRLGKEREEISVVADQIGSPTYVADLNVMINKLIHTSLYGTYHVSNTGSCSWFEFAKKIFSYANMKVNVLPVSTEEFGAAAARPKYSIFQHNMLRLNGFLQMPSWEEGLERFFIET 281
               SCOP domains d3sc6d_ D: automated matches                                                                                                                                                                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee...hhhhhhhh.......eeeeee........hhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.hhh.................hhhhhhhhhhhhhhhhhh..eeeeee..ee.....hhhhhhhhhhh...eeeee...ee..eehhhhhhhhhhhh.....eeee......eehhhhhhhhhhhh....eeeeehhhhhh.......ee...hhhhhhh......hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sc6 D  -1 NAMKERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQEIRPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGAKLVYISTDYVFQGDRPEGYDEFHNPAPINIYGASKYAGEQFVKELHNKYFIVRTSWLYGKYGNNFVKTMIRLGKEREEISVVADQIGSPTYVADLNVMINKLIHTSLYGTYHVSNTGSCSWFEFAKKIFSYANMKVNVLPVSTEEFGAAAARPKYSIFQHNMLRLNGFLQMPSWEEGLERFFIET 281
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278   


Chain E from PDB  Type:PROTEIN  Length:278
 aligned with Q81TN9_BACAN | Q81TN9 from UniProtKB/TrEMBL  Length:284

    Alignment length:281
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281 
         Q81TN9_BACAN     2 KERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQEIRPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGAKLVYISTDYVFQGDRPEGYDEFHNPAPINIYGASKYAGEQFVKELHNKYFIVRTSWLYGKYGNNFVKTMIRLGKEREEISVVADQIGSPTYVADLNVMINKLIHTSLYGTYHVSNTGSCSWFEFAKKIFSYANMKVNVLPVSTEEFGAAAARPKYSIFQHNMLRLNGFLQMPSWEEGLERFFIETK 282
               SCOP domains d3sc6e_ E: automated matches                                                                                                                                                                                                                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee...hhhhhhhhhhh....eeeeee........hhhhhhhhhhhhh..eeee.....hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.hhh.................hhhhhhhhhhhhhhhhhh..eeeeee..ee.....hhhhhhhhhhh...eeeee...ee..eehhhhhhhhhhhhhh...eeee......eehhhhhhhhhhhhh...eeeee.....---.....ee...hhhhhhh......hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sc6 E   2 KERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQEIRPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGAKLVYISTDYVFQGDRPEGYDEFHNPAPINIYGASKYAGEQFVKELHNKYFIVRTSWLYGKYGNNFVKTMIRLGKEREEISVVADQIGSPTYVADLNVMINKLIHTSLYGTYHVSNTGSCSWFEFAKKIFSYANMKVNVLPVSTEEF---AARPKYSIFQHNMLRLNGFLQMPSWEEGLERFFIETK 282
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241|   |  251       261       271       281 
                                                                                                                                                                                                                                                                          242 246                                    


Chain F from PDB  Type:PROTEIN  Length:281
 aligned with Q81TN9_BACAN | Q81TN9 from UniProtKB/TrEMBL  Length:284

    Alignment length:281
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280 
         Q81TN9_BACAN     1 MKERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQEIRPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGAKLVYISTDYVFQGDRPEGYDEFHNPAPINIYGASKYAGEQFVKELHNKYFIVRTSWLYGKYGNNFVKTMIRLGKEREEISVVADQIGSPTYVADLNVMINKLIHTSLYGTYHVSNTGSCSWFEFAKKIFSYANMKVNVLPVSTEEFGAAAARPKYSIFQHNMLRLNGFLQMPSWEEGLERFFIET 281
               SCOP domains d3sc6f_ F: automated matches                                                                                                                                                                                                                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --RmlD_sub_bind-3sc6F01 F:3-281                                                                                                                                                                                                                                                           Pfam domains (1)
           Pfam domains (2) --RmlD_sub_bind-3sc6F02 F:3-281                                                                                                                                                                                                                                                           Pfam domains (2)
           Pfam domains (3) --RmlD_sub_bind-3sc6F03 F:3-281                                                                                                                                                                                                                                                           Pfam domains (3)
           Pfam domains (4) --RmlD_sub_bind-3sc6F04 F:3-281                                                                                                                                                                                                                                                           Pfam domains (4)
           Pfam domains (5) --RmlD_sub_bind-3sc6F05 F:3-281                                                                                                                                                                                                                                                           Pfam domains (5)
           Pfam domains (6) --RmlD_sub_bind-3sc6F06 F:3-281                                                                                                                                                                                                                                                           Pfam domains (6)
         Sec.struct. author ..eeeeee...hhhhhhhhhhh....eeeeee........hhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.....................hhhhhhhhhhhhhhhhhh..eeeeee..ee.....hhhhhhhhhhhhh.eeeee...ee..eehhhhhhhhhhhh.....eeee......eehhhhhhhhhhhh....eeeeehhhhhh.......ee...hhhhhhh......hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sc6 F   1 MKERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQEIRPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGAKLVYISTDYVFQGDRPEGYDEFHNPAPINIYGASKYAGEQFVKELHNKYFIVRTSWLYGKYGNNFVKTMIRLGKEREEISVVADQIGSPTYVADLNVMINKLIHTSLYGTYHVSNTGSCSWFEFAKKIFSYANMKVNVLPVSTEEFGAAAARPKYSIFQHNMLRLNGFLQMPSWEEGLERFFIET 281
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 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3SC6)

(-) Pfam Domains  (1, 6)

Asymmetric Unit
(-)
Clan: NADP_Rossmann (1239)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (Q81TN9_BACAN | Q81TN9)
molecular function
    GO:0008831    dTDP-4-dehydrorhamnose reductase activity    Catalysis of the reaction: dTDP-6-deoxy-L-mannose + NADP(+) = dTDP-4-dehydro-6-deoxy-L-mannose + H(+) + NADPH.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.

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  3sc6
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 Related Entries

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