3S95 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE HUMAN LIMK1 KINASE DOMAIN IN COMPLEX WITH STAUROSPORINE

Authors :   A. Beltrami, A. Chaikuad, N. Daga, J. M. Elkins, P. Mahajan, P. Savitsky M. Vollmar, T. Krojer, J. R. C. Muniz, O. Fedorov, C. K. Allerston, W. W. O. Gileadi, F. Von Delft, C. H. Arrowsmith, A. M. Edwards, J. Weigelt, C. Bountra, S. Knapp, A. Bullock, Structural Genomics Consortium

Date :   31 May 11 (Deposition) - 06 Jul 11 (Release) - 06 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.65

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Structural Genomics, Structural Genomics Consortium, Sgc, Protein Kinase, Lim Domain Kinase, Transferase-Antibiotic Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Beltrami, A. Chaikuad, N. Daga, J. M. Elkins, P. Mahajan, P. Savitsky, M. Vollmar, T. Krojer, J. R. C. Muniz, O. Fedorov, C. K. Allerston, W. W. Yue, O. Gileadi, F. Von Delft, C. H. Arrowsmith, A. M. Edwards, J. Weigelt, C. Bountra, S. Knapp, A. Bullock
Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine
To Be Published
PubMed: search

Molecule 1 - LIM DOMAIN KINASE 1
	Chains	:	A, B
	EC Number	:	2.7.11.1
	Engineered	:	YES
	Expression System	:	SPODOPTERA FRUGIPERDA
	Expression System Cell Line	:	SF9
	Expression System Common	:	FALL ARMYWORM
	Expression System Plasmid	:	PFB-LIC-BSE
	Expression System Taxid	:	7108
	Expression System Vector Type	:	BACULOVIRUS
	Fragment	:	KINASE DOMAIN (RESIDUE 330-637)
	Gene	:	LIMK, LIMK1
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	LIMK-1

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (6, 20)

No.	Name	Count	Type	Full Name
1	CL	2	Ligand/Ion	CHLORIDE ION
2	GOL	11	Ligand/Ion	GLYCEROL
3	MRD	1	Ligand/Ion	(4R)-2-METHYLPENTANE-2,4-DIOL
4	NA	2	Ligand/Ion	SODIUM ION
5	STU	2	Ligand/Ion	STAUROSPORINE
6	TRS	2	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

Biological Unit 1 (3, 11)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	GOL	9	Ligand/Ion	GLYCEROL
3	MRD	-1	Ligand/Ion	(4R)-2-METHYLPENTANE-2,4-DIOL
4	NA	-1	Ligand/Ion	SODIUM ION
5	STU	1	Ligand/Ion	STAUROSPORINE
6	TRS	1	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

Biological Unit 2 (4, 5)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	GOL	2	Ligand/Ion	GLYCEROL
3	MRD	1	Ligand/Ion	(4R)-2-METHYLPENTANE-2,4-DIOL
4	NA	-1	Ligand/Ion	SODIUM ION
5	STU	1	Ligand/Ion	STAUROSPORINE
6	TRS	1	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

Asymmetric Unit (20, 20)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	LEU A:345 , GLY A:346 , VAL A:366 , LYS A:368 , GLU A:384 , LEU A:397 , THR A:413 , GLU A:414 , TYR A:415 , ILE A:416 , GLY A:419 , THR A:420 , HIS A:464 , ASN A:465 , LEU A:467 , HOH A:681	BINDING SITE FOR RESIDUE STU A 1
02	AC2	SOFTWARE	LEU B:345 , GLY B:346 , ALA B:353 , VAL B:366 , LYS B:368 , GLU B:384 , THR B:413 , GLU B:414 , TYR B:415 , ILE B:416 , GLY B:419 , THR B:420 , HIS B:464 , ASN B:465 , LEU B:467 , HOH B:707	BINDING SITE FOR RESIDUE STU B 1
03	AC3	SOFTWARE	ASN A:574 , HOH B:47 , HOH B:202 , LEU B:391 , GLU B:392	BINDING SITE FOR RESIDUE NA B 638
04	AC4	SOFTWARE	HOH A:44 , HOH A:254 , LEU A:391 , GLU A:392 , ASN B:574	BINDING SITE FOR RESIDUE NA A 2
05	AC5	SOFTWARE	MET A:0 , LEU B:567 , ASP B:568	BINDING SITE FOR RESIDUE GOL A 638
06	AC6	SOFTWARE	HOH B:83 , HIS B:452 , SER B:453	BINDING SITE FOR RESIDUE GOL B 2
07	AC7	SOFTWARE	HOH A:80 , HOH A:263 , GLY A:544 , ARG A:545	BINDING SITE FOR RESIDUE GOL A 3
08	AC8	SOFTWARE	PRO A:513 , TYR A:514 , PRO A:550 , HOH A:758	BINDING SITE FOR RESIDUE GOL A 4
09	AC9	SOFTWARE	HOH A:263 , ARG A:569	BINDING SITE FOR RESIDUE GOL A 5
10	BC1	SOFTWARE	HOH A:37 , ARG A:585 , GLU A:592 , LYS A:593 , ARG A:594 , LYS A:599	BINDING SITE FOR RESIDUE GOL A 6
11	BC2	SOFTWARE	PRO A:619 , GLN A:620 , GLN A:623 , ILE B:521 , ARG B:555	BINDING SITE FOR RESIDUE GOL A 7
12	BC3	SOFTWARE	HIS A:602	BINDING SITE FOR RESIDUE GOL A 8
13	BC4	SOFTWARE	SER A:-1 , ASP B:568 , ARG B:569 , CYS B:571	BINDING SITE FOR RESIDUE GOL A 9
14	BC5	SOFTWARE	HOH B:124 , HIS B:602 , HOH B:774	BINDING SITE FOR RESIDUE GOL B 10
15	BC6	SOFTWARE	ASP A:568 , ARG A:569 , CYS A:571 , SER B:-1	BINDING SITE FOR RESIDUE GOL A 11
16	BC7	SOFTWARE	HOH A:36 , HOH A:50 , PRO A:550 , ASP A:551 , TYR A:552 , LYS B:599 , HIS B:602 , GLN B:620	BINDING SITE FOR RESIDUE MRD B 639
17	BC8	SOFTWARE	PRO A:619 , GLN A:620	BINDING SITE FOR RESIDUE CL A 639
18	BC9	SOFTWARE	HOH B:24 , HOH B:131 , ARG B:437 , ARG B:545 , PRO B:572	BINDING SITE FOR RESIDUE CL B 640
19	CC1	SOFTWARE	HOH B:201 , ARG B:422 , LYS B:426 , HIS B:464 , HOH B:690 , HOH B:768	BINDING SITE FOR RESIDUE TRS B 641
20	CC2	SOFTWARE	ARG A:422 , LYS A:426 , HIS A:464 , ASN A:547 , HOH A:740 , HOH A:778	BINDING SITE FOR RESIDUE TRS A 640

(no "SS Bond" information available for 3S95)

(no "Cis Peptide Bond" information available for 3S95)

Asymmetric Unit (2, 4)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_042248	R	422	Q	LIMK1_HUMAN	Polymorphism	55679316	A/B	R	422	Q
2	UniProt	VAR_050148	F	580	Y	LIMK1_HUMAN	Polymorphism	178412	A/B	F	580	Y

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_042248	R	422	Q	LIMK1_HUMAN	Polymorphism	55679316	A	R	422	Q
2	UniProt	VAR_050148	F	580	Y	LIMK1_HUMAN	Polymorphism	178412	A	F	580	Y

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_042248	R	422	Q	LIMK1_HUMAN	Polymorphism	55679316	B	R	422	Q
2	UniProt	VAR_050148	F	580	Y	LIMK1_HUMAN	Polymorphism	178412	B	F	580	Y

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PROTEIN_KINASE_ATP	PS00107	Protein kinases ATP-binding region signature.	LIMK1_HUMAN	345-368	2	A:345-368 B:345-368

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PROTEIN_KINASE_ATP	PS00107	Protein kinases ATP-binding region signature.	LIMK1_HUMAN	345-368	1	A:345-368 -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PROTEIN_KINASE_ATP	PS00107	Protein kinases ATP-binding region signature.	LIMK1_HUMAN	345-368	1	- B:345-368

(no "Exon" information available for 3S95)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:290
 aligned with LIMK1_HUMAN | P53667 from UniProtKB/Swiss-Prot  Length:647

    Alignment length:310
                                   337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637
          LIMK1_HUMAN   328 CRPHRIFRPSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDRYCPPNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLRMHLAGHLPLGPQLEQLDRGFWETYRRGES 637
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeehhh.eeeeeeee....eeeeeeee.....eeeeeee...hhhhhhhhhhhhhhhh.........eeeeeee..eeeeeee.....hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.ee........eee.....eee......ee..--------------------.....hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh................hhhhhhhhh.......hhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------Q-------------------------------------------------------------------------------------------------------------------------------------------------------------Y--------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------PROTEIN_KINASE_ATP      ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s95 A  -1 SMPHRIFRPSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVRENKNVVVADFGLARLMV--------------------YTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDRYCPPNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLRMHLAGHLPLGPQLEQLDRGFWETYRRGES 637
                             ||    337       347       357       367       377       387       397       407       417       427       437       447       457       467       477        |-         -       507       517       527       537       547       557       567       577       587       597       607       617       627       637
                             0|                                                                                                                                                         486                  507                                                                                                                                  
                            330

Chain B from PDB  Type:PROTEIN  Length:290
 aligned with LIMK1_HUMAN | P53667 from UniProtKB/Swiss-Prot  Length:647

    Alignment length:310
                                   337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637
          LIMK1_HUMAN   328 CRPHRIFRPSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDRYCPPNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLRMHLAGHLPLGPQLEQLDRGFWETYRRGES 637
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----------Pkinase_Tyr-3s95B01 B:339-604                                                                                                                                                                                                                                             --------------------------------- Pfam domains (1)
           Pfam domains (2) -----------Pkinase_Tyr-3s95B02 B:339-604                                                                                                                                                                                                                                             --------------------------------- Pfam domains (2)
         Sec.struct. author ....eeehhh.eeeeeeeee...eeeeeeee.....eeeeeee...hhhhhhhhhhhhhhhh.........eeeeeee..eeeeeee.....hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.ee........eee.....eee......ee..--------------------.....hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh................hhhhhhhhh.......hhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------Q-------------------------------------------------------------------------------------------------------------------------------------------------------------Y--------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------PROTEIN_KINASE_ATP      ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s95 B  -1 SMPHRIFRPSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVRENKNVVVADFGLARLMV--------------------YTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDRYCPPNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLRMHLAGHLPLGPQLEQLDRGFWETYRRGES 637
                             ||    337       347       357       367       377       387       397       407       417       427       437       447       457       467       477        |-         -       507       517       527       537       547       557       567       577       587       597       607       617       627       637
                             0|                                                                                                                                                         486                  507                                                                                                                                  
                            330

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3S95)

(no "CATH Domain" information available for 3S95)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: PKinase (934)

Family: Pkinase_Tyr (229)

Homo sapiens (Human) (202)

1a	Pkinase_Tyr-3s95B01	B:339-604
1b	Pkinase_Tyr-3s95B02	B:339-604

Asymmetric Unit(hide GO term definitions)

Chain A,B (LIMK1_HUMAN | P53667)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0031072	heat shock protein binding	Interacting selectively and non-covalently with a heat shock protein, any protein synthesized or activated in response to heat shock.
	GO:0016301	kinase activity	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0046982	protein heterodimerization activity	Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
	GO:0004672	protein kinase activity	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
	GO:0004674	protein serine/threonine kinase activity	Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0038096	Fc-gamma receptor signaling pathway involved in phagocytosis	An Fc-gamma receptor signaling pathway that contributes to the endocytic engulfment of external particulate material by phagocytes.
	GO:0007266	Rho protein signal transduction	A series of molecular signals within the cell that are mediated by a member of the Rho family of proteins switching to a GTP-bound active state.
	GO:0030036	actin cytoskeleton organization	A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins.
	GO:0051444	negative regulation of ubiquitin-protein transferase activity	Any process that stops, prevents, or reduces the frequency, rate or extent of ubiquitin transferase activity.
	GO:0007399	nervous system development	The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state.
	GO:0016310	phosphorylation	The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
	GO:0032233	positive regulation of actin filament bundle assembly	Any process that activates or increases the frequency, rate or extent of the assembly of actin filament bundles.
	GO:0045773	positive regulation of axon extension	Any process that activates or increases the frequency, rate or extent of axon extension.
	GO:0051496	positive regulation of stress fiber assembly	Any process that activates or increases the frequency, rate or extent of the assembly of a stress fiber, a bundle of microfilaments and other proteins found in fibroblasts.
	GO:0006468	protein phosphorylation	The process of introducing a phosphate group on to a protein.
	GO:0007165	signal transduction	The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
	GO:0005794	Golgi apparatus	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
	GO:0044295	axonal growth cone	The migrating motile tip of a growing nerve cell axon.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0005925	focal adhesion	Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0043005	neuron projection	A prolongation or process extending from a nerve cell, e.g. an axon or dendrite.
	GO:0005654	nucleoplasm	That part of the nuclear content other than the chromosomes or the nucleolus.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0048471	perinuclear region of cytoplasm	Cytoplasm situated near, or occurring around, the nucleus.

Asymmetric Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3s95)

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Access by PDB/NDB ID
	3s95
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	LIMK1_HUMAN \| P53667
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	2.7.11.1
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	LIMK1_HUMAN \| P53667
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	LIMK1_HUMAN \| P53667	:	5hvj 5hvk 5l6w 5nxc

(no "Related Entries Specified in the PDB File" available for 3S95)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 20)

Sites (20, 20)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (2, 4)

PROSITE Motifs (1, 2)

Exons (0, 0)

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SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (1, 2)

Gene Ontology (32, 32)

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Related Entries Specified in the PDB File