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3S95
Biol. Unit 1
Info
Asym.Unit (222 KB)
Biol.Unit 1 (108 KB)
Biol.Unit 2 (109 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HUMAN LIMK1 KINASE DOMAIN IN COMPLEX WITH STAUROSPORINE
Authors
:
A. Beltrami, A. Chaikuad, N. Daga, J. M. Elkins, P. Mahajan, P. Savitsky M. Vollmar, T. Krojer, J. R. C. Muniz, O. Fedorov, C. K. Allerston, W. W. O. Gileadi, F. Von Delft, C. H. Arrowsmith, A. M. Edwards, J. Weigelt, C. Bountra, S. Knapp, A. Bullock, Structural Genomics Consortium
Date
:
31 May 11 (Deposition) - 06 Jul 11 (Release) - 06 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Structural Genomics, Structural Genomics Consortium, Sgc, Protein Kinase, Lim Domain Kinase, Transferase-Antibiotic Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Beltrami, A. Chaikuad, N. Daga, J. M. Elkins, P. Mahajan, P. Savitsky, M. Vollmar, T. Krojer, J. R. C. Muniz, O. Fedorov, C. K. Allerston, W. W. Yue, O. Gileadi, F. Von Delft, C. H. Arrowsmith, A. M. Edwards, J. Weigelt, C. Bountra, S. Knapp, A. Bullock
Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine
To Be Published
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Hetero Components
(3, 11)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
3a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
5a: STAUROSPORINE (STUa)
5b: STAUROSPORINE (STUb)
6a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
6b: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
GOL
9
Ligand/Ion
GLYCEROL
3
MRD
-1
Ligand/Ion
(4R)-2-METHYLPENTANE-2,4-DIOL
4
NA
-1
Ligand/Ion
SODIUM ION
5
STU
1
Ligand/Ion
STAUROSPORINE
6
TRS
1
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC3 (SOFTWARE)
03: AC4 (SOFTWARE)
04: AC5 (SOFTWARE)
05: AC7 (SOFTWARE)
06: AC8 (SOFTWARE)
07: AC9 (SOFTWARE)
08: BC1 (SOFTWARE)
09: BC2 (SOFTWARE)
10: BC3 (SOFTWARE)
11: BC4 (SOFTWARE)
12: BC6 (SOFTWARE)
13: BC7 (SOFTWARE)
14: BC8 (SOFTWARE)
15: CC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:345 , GLY A:346 , VAL A:366 , LYS A:368 , GLU A:384 , LEU A:397 , THR A:413 , GLU A:414 , TYR A:415 , ILE A:416 , GLY A:419 , THR A:420 , HIS A:464 , ASN A:465 , LEU A:467 , HOH A:681
BINDING SITE FOR RESIDUE STU A 1
02
AC3
SOFTWARE
ASN A:574 , HOH B:47 , HOH B:202 , LEU B:391 , GLU B:392
BINDING SITE FOR RESIDUE NA B 638
03
AC4
SOFTWARE
HOH A:44 , HOH A:254 , LEU A:391 , GLU A:392 , ASN B:574
BINDING SITE FOR RESIDUE NA A 2
04
AC5
SOFTWARE
MET A:0 , LEU B:567 , ASP B:568
BINDING SITE FOR RESIDUE GOL A 638
05
AC7
SOFTWARE
HOH A:80 , HOH A:263 , GLY A:544 , ARG A:545
BINDING SITE FOR RESIDUE GOL A 3
06
AC8
SOFTWARE
PRO A:513 , TYR A:514 , PRO A:550 , HOH A:758
BINDING SITE FOR RESIDUE GOL A 4
07
AC9
SOFTWARE
HOH A:263 , ARG A:569
BINDING SITE FOR RESIDUE GOL A 5
08
BC1
SOFTWARE
HOH A:37 , ARG A:585 , GLU A:592 , LYS A:593 , ARG A:594 , LYS A:599
BINDING SITE FOR RESIDUE GOL A 6
09
BC2
SOFTWARE
PRO A:619 , GLN A:620 , GLN A:623 , ILE B:521 , ARG B:555
BINDING SITE FOR RESIDUE GOL A 7
10
BC3
SOFTWARE
HIS A:602
BINDING SITE FOR RESIDUE GOL A 8
11
BC4
SOFTWARE
SER A:-1 , ASP B:568 , ARG B:569 , CYS B:571
BINDING SITE FOR RESIDUE GOL A 9
12
BC6
SOFTWARE
ASP A:568 , ARG A:569 , CYS A:571 , SER B:-1
BINDING SITE FOR RESIDUE GOL A 11
13
BC7
SOFTWARE
HOH A:36 , HOH A:50 , PRO A:550 , ASP A:551 , TYR A:552 , LYS B:599 , HIS B:602 , GLN B:620
BINDING SITE FOR RESIDUE MRD B 639
14
BC8
SOFTWARE
PRO A:619 , GLN A:620
BINDING SITE FOR RESIDUE CL A 639
15
CC2
SOFTWARE
ARG A:422 , LYS A:426 , HIS A:464 , ASN A:547 , HOH A:740 , HOH A:778
BINDING SITE FOR RESIDUE TRS A 640
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_042248 (R422Q, chain A, )
2: VAR_050148 (F580Y, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_042248
R
422
Q
LIMK1_HUMAN
Polymorphism
55679316
A
R
422
Q
2
UniProt
VAR_050148
F
580
Y
LIMK1_HUMAN
Polymorphism
178412
A
F
580
Y
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:345-368)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
LIMK1_HUMAN
345-368
1
A:345-368
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Pkinase_Tyr_3s95B01 (B:339-604)
1b: PFAM_Pkinase_Tyr_3s95B02 (B:339-604)
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Clans
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Families
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(
)
Organisms
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)
(
)
Clan
:
PKinase
(934)
Family
:
Pkinase_Tyr
(229)
Homo sapiens (Human)
(202)
1a
Pkinase_Tyr-3s95B01
B:339-604
1b
Pkinase_Tyr-3s95B02
B:339-604
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Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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show SS bonds with a radius of 100 units (=0.4Å)
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Show PDB file:
Asym.Unit (222 KB)
Header - Asym.Unit
Biol.Unit 1 (108 KB)
Header - Biol.Unit 1
Biol.Unit 2 (109 KB)
Header - Biol.Unit 2
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